Wall clock time and date at job start Tue Mar 31 2020 06:31:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30742 * 1 3 3 Si 1.86795 * 120.00247 * 2 1 4 4 H 1.48497 * 109.47406 * 274.99623 * 3 2 1 5 5 H 1.48505 * 109.47082 * 34.99319 * 3 2 1 6 6 H 1.48504 * 109.47381 * 154.99207 * 3 2 1 7 7 C 1.40037 * 119.99860 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99829 * 144.20232 * 7 2 1 9 9 C 1.41542 * 119.99869 * 323.92795 * 7 2 1 10 10 C 1.41160 * 120.99707 * 345.33577 * 9 7 2 11 11 C 1.36594 * 119.12595 * 179.97438 * 10 9 7 12 12 N 1.32070 * 121.25736 * 359.97438 * 11 10 9 13 13 C 1.32489 * 122.23219 * 0.02562 * 12 11 10 14 14 N 1.39454 * 119.64879 * 180.02562 * 13 12 11 15 15 C 1.34783 * 120.00061 * 355.27708 * 14 13 12 16 16 O 1.21581 * 120.00077 * 5.94768 * 15 14 13 17 17 N 1.34778 * 120.00133 * 185.94793 * 15 14 13 18 18 C 1.46497 * 119.99759 * 180.02562 * 17 15 14 19 19 H 1.08996 * 108.83126 * 325.69464 * 18 17 15 20 20 C 1.52338 * 108.86569 * 207.16738 * 18 17 15 21 21 C 1.54258 * 112.58949 * 239.18306 * 20 18 17 22 22 S 1.83959 * 102.58219 * 24.52432 * 21 20 18 23 23 C 1.54255 * 108.87226 * 84.23035 * 18 17 15 24 24 C 1.38644 * 120.70369 * 359.73679 * 13 12 11 25 25 H 0.97003 * 119.99786 * 0.02562 * 1 2 3 26 26 H 1.08003 * 120.43993 * 359.95657 * 10 9 7 27 27 H 1.07995 * 119.36763 * 180.02562 * 11 10 9 28 28 H 0.97003 * 120.00538 * 175.27822 * 14 13 12 29 29 H 0.97000 * 119.99829 * 359.97438 * 17 15 14 30 30 H 1.09000 * 108.86881 * 0.02562 * 20 18 17 31 31 H 1.09004 * 108.87079 * 118.35972 * 20 18 17 32 32 H 1.08994 * 110.78921 * 142.80041 * 21 20 18 33 33 H 1.09007 * 110.78379 * 266.25500 * 21 20 18 34 34 H 1.09001 * 110.78962 * 214.56198 * 23 18 17 35 35 H 1.09009 * 110.78600 * 338.01720 * 23 18 17 36 36 H 1.07997 * 120.66420 * 180.29344 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2415 1.6177 0.0000 4 1 2.3834 2.1073 -1.3947 5 1 1.4957 2.6199 0.8029 6 1 3.5878 1.4119 0.5919 7 6 2.0076 -1.2128 -0.0005 8 1 2.9345 -1.3009 -0.5477 9 6 1.5033 -2.3213 0.7207 10 6 0.4840 -2.1594 1.6837 11 6 0.0253 -3.2556 2.3572 12 7 0.5169 -4.4589 2.1232 13 6 1.4736 -4.6702 1.2314 14 7 1.9529 -5.9638 1.0272 15 6 1.5118 -6.9758 1.8005 16 8 0.6186 -6.7833 2.6025 17 7 2.0610 -8.2012 1.6847 18 6 1.5812 -9.3012 2.5248 19 1 1.2972 -8.9022 3.4986 20 6 2.7110 -10.3053 2.7143 21 6 2.3451 -11.7130 2.2003 22 16 1.0457 -11.3570 0.9478 23 6 0.3385 -9.9301 1.8617 24 6 1.9994 -3.6198 0.4948 25 1 -0.4850 0.8401 -0.0004 26 1 0.0724 -1.1815 1.8856 27 1 -0.7548 -3.1362 3.0944 28 1 2.6037 -6.1354 0.3286 29 1 2.7734 -8.3548 1.0445 30 1 3.5910 -9.9513 2.1773 31 1 2.9517 -10.3691 3.7755 32 1 3.2078 -12.1920 1.7374 33 1 1.9465 -12.3279 3.0073 34 1 -0.3726 -10.2685 2.6153 35 1 -0.1307 -9.2265 1.1739 36 1 2.7760 -3.7935 -0.2353 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000871725051.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:31:18 Heat of formation + Delta-G solvation = -7.989049 kcal Electronic energy + Delta-G solvation = -20381.959887 eV Core-core repulsion = 17184.525450 eV Total energy + Delta-G solvation = -3197.434437 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 293.094 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.48593 -39.94215 -37.76231 -36.21360 -35.35830 -33.53378 -32.64501 -30.61305 -29.66938 -27.92552 -26.11181 -23.83843 -23.56268 -21.81167 -21.50992 -19.74426 -19.44191 -17.89194 -17.50598 -17.21301 -16.80878 -16.28535 -16.17654 -15.98925 -15.51139 -15.21529 -15.02961 -14.73282 -14.35153 -14.19083 -13.91743 -13.29660 -13.12304 -13.08237 -12.89214 -12.75920 -12.64168 -12.06159 -12.03535 -11.93370 -11.47504 -11.21912 -11.00904 -10.97809 -10.18923 -10.07469 -9.55666 -8.91602 -8.81702 -8.74462 -6.52644 0.86496 0.86802 1.00241 1.33843 1.39066 1.51461 1.58988 1.64143 2.16112 2.26348 2.70650 3.15977 3.49221 3.76145 3.78490 3.96913 4.08927 4.16616 4.22394 4.49099 4.64368 4.73957 4.81327 4.87488 4.93738 4.94641 5.01623 5.04143 5.18936 5.51111 5.53415 5.62517 5.88742 5.89830 6.24990 6.53239 6.77733 6.81236 7.00187 7.62611 7.94229 8.08817 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.045432 B = 0.002856 C = 0.002806 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 616.164418 B = 9800.119068 C = 9976.145033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.781 5.781 2 C 0.054 3.946 3 Si 0.978 3.022 4 H -0.256 1.256 5 H -0.264 1.264 6 H -0.256 1.256 7 C -0.485 4.485 8 H 0.090 0.910 9 C 0.118 3.882 10 C -0.268 4.268 11 C 0.106 3.894 12 N -0.589 5.589 13 C 0.372 3.628 14 N -0.659 5.659 15 C 0.689 3.311 16 O -0.577 6.577 17 N -0.722 5.722 18 C 0.162 3.838 19 H 0.085 0.915 20 C -0.125 4.125 21 C -0.048 4.048 22 S -0.343 6.343 23 C -0.068 4.068 24 C -0.331 4.331 25 H 0.299 0.701 26 H 0.106 0.894 27 H 0.135 0.865 28 H 0.422 0.578 29 H 0.411 0.589 30 H 0.100 0.900 31 H 0.108 0.892 32 H 0.128 0.872 33 H 0.107 0.893 34 H 0.101 0.899 35 H 0.081 0.919 36 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.027 -15.719 2.376 17.809 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.403 5.403 2 C -0.169 4.169 3 Si 0.797 3.203 4 H -0.180 1.180 5 H -0.188 1.188 6 H -0.180 1.180 7 C -0.514 4.514 8 H 0.108 0.892 9 C 0.111 3.889 10 C -0.292 4.292 11 C -0.044 4.044 12 N -0.310 5.310 13 C 0.143 3.857 14 N -0.309 5.309 15 C 0.389 3.611 16 O -0.451 6.451 17 N -0.381 5.381 18 C 0.055 3.945 19 H 0.103 0.897 20 C -0.165 4.165 21 C -0.196 4.196 22 S -0.117 6.117 23 C -0.218 4.218 24 C -0.358 4.358 25 H 0.110 0.890 26 H 0.124 0.876 27 H 0.152 0.848 28 H 0.260 0.740 29 H 0.248 0.752 30 H 0.118 0.882 31 H 0.127 0.873 32 H 0.146 0.854 33 H 0.126 0.874 34 H 0.120 0.880 35 H 0.100 0.900 36 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 6.355 -16.763 2.534 18.106 hybrid contribution 0.873 1.987 -0.230 2.182 sum 7.228 -14.776 2.304 16.610 Atomic orbital electron populations 1.69922 1.09987 1.32155 1.28279 1.26948 0.94948 1.05116 0.89930 0.85267 0.79708 0.75404 0.79884 1.17979 1.18818 1.17988 1.19831 1.07965 0.95320 1.28265 0.89194 1.17850 0.89199 0.92082 0.89812 1.21689 1.05489 0.98872 1.03165 1.21791 0.97390 0.87752 0.97436 1.67327 1.16048 1.24574 1.23001 1.18002 0.91592 0.83703 0.92408 1.42415 1.46385 1.04686 1.37404 1.16298 0.82189 0.81075 0.81579 1.90997 1.31967 1.82570 1.39548 1.45285 1.41825 1.06666 1.44314 1.21407 0.92314 0.86866 0.93925 0.89670 1.22257 0.97630 0.91571 1.05007 1.24297 0.98258 0.99169 0.97826 1.88215 1.44546 1.42764 1.36223 1.24596 1.00359 0.95894 1.00904 1.21160 1.12260 0.91898 1.10464 0.89014 0.87606 0.84761 0.74013 0.75212 0.88179 0.87333 0.85413 0.87432 0.88009 0.90002 0.86251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -38.67 11.63 21.84 0.25 -38.42 16 2 C 0.05 2.55 4.81 85.29 0.41 2.96 16 3 Si 0.98 35.15 29.67 68.60 2.04 37.19 16 4 H -0.26 -8.65 7.11 99.48 0.71 -7.94 16 5 H -0.26 -9.06 7.11 99.48 0.71 -8.36 16 6 H -0.26 -9.18 7.11 99.48 0.71 -8.47 16 7 C -0.49 -24.93 9.01 23.52 0.21 -24.72 16 8 H 0.09 4.37 8.04 -2.91 -0.02 4.35 16 9 C 0.12 6.36 5.66 -21.11 -0.12 6.24 16 10 C -0.27 -14.43 8.89 22.60 0.20 -14.23 16 11 C 0.11 5.54 11.10 84.27 0.94 6.48 16 12 N -0.59 -31.19 7.86 -194.27 -1.53 -32.72 16 13 C 0.37 17.84 7.42 132.76 0.99 18.82 16 14 N -0.66 -24.19 5.40 -322.36 -1.74 -25.93 16 15 C 0.69 24.82 8.39 179.05 1.50 26.32 16 16 O -0.58 -26.61 14.24 -3.97 -0.06 -26.66 16 17 N -0.72 -17.07 4.91 -456.83 -2.24 -19.31 16 18 C 0.16 3.31 2.94 45.20 0.13 3.44 16 19 H 0.09 2.08 7.52 -2.39 -0.02 2.07 16 20 C -0.13 -1.42 6.09 30.80 0.19 -1.23 16 21 C -0.05 -0.50 7.46 72.41 0.54 0.04 16 22 S -0.34 -6.85 23.26 -56.49 -1.31 -8.16 16 23 C -0.07 -1.54 7.07 72.41 0.51 -1.02 16 24 C -0.33 -16.19 9.74 23.00 0.22 -15.96 16 25 H 0.30 13.03 8.29 -92.71 -0.77 12.26 16 26 H 0.11 5.72 6.31 -2.91 -0.02 5.70 16 27 H 0.13 6.33 8.06 -2.91 -0.02 6.30 16 28 H 0.42 11.61 8.72 -92.71 -0.81 10.80 16 29 H 0.41 7.02 8.24 -92.71 -0.76 6.26 16 30 H 0.10 0.91 7.44 -2.39 -0.02 0.89 16 31 H 0.11 0.89 8.14 -2.39 -0.02 0.87 16 32 H 0.13 0.88 8.14 -2.39 -0.02 0.86 16 33 H 0.11 0.86 8.14 -2.38 -0.02 0.84 16 34 H 0.10 2.13 8.14 -2.39 -0.02 2.11 16 35 H 0.08 2.34 7.94 -2.38 -0.02 2.32 16 36 H 0.12 5.15 8.06 -2.91 -0.02 5.13 16 Total: -1.00 -71.58 318.07 0.69 -70.89 By element: Atomic # 1 Polarization: 36.44 SS G_CDS: -0.44 Total: 36.00 kcal Atomic # 6 Polarization: 1.40 SS G_CDS: 5.72 Total: 7.12 kcal Atomic # 7 Polarization: -111.12 SS G_CDS: -5.26 Total: -116.37 kcal Atomic # 8 Polarization: -26.61 SS G_CDS: -0.06 Total: -26.66 kcal Atomic # 14 Polarization: 35.15 SS G_CDS: 2.04 Total: 37.19 kcal Atomic # 16 Polarization: -6.85 SS G_CDS: -1.31 Total: -8.16 kcal Total: -71.58 0.69 -70.89 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871725051.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.903 kcal (2) G-P(sol) polarization free energy of solvation -71.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.892 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds