Wall clock time and date at job start Tue Mar 31 2020 06:29:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30749 * 1 3 3 Si 1.86797 * 120.00058 * 2 1 4 4 H 1.48501 * 109.46923 * 274.98786 * 3 2 1 5 5 H 1.48504 * 109.47167 * 34.98233 * 3 2 1 6 6 H 1.48495 * 109.47291 * 154.98478 * 3 2 1 7 7 C 1.40029 * 119.99722 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99353 * 173.66649 * 7 2 1 9 9 C 1.41326 * 120.00333 * 353.67393 * 7 2 1 10 10 C 1.40607 * 119.78901 * 186.32384 * 9 7 2 11 11 C 1.38315 * 119.13350 * 179.97438 * 10 9 7 12 12 C 1.38690 * 118.66541 * 359.72623 * 11 10 9 13 13 C 1.39640 * 119.49935 * 0.55822 * 12 11 10 14 14 N 1.39252 * 119.57661 * 179.70313 * 13 12 11 15 15 C 1.34768 * 119.99823 * 341.17006 * 14 13 12 16 16 O 1.21573 * 120.00621 * 354.20591 * 15 14 13 17 17 N 1.34779 * 119.99892 * 174.20469 * 15 14 13 18 18 C 1.46496 * 120.00378 * 180.02562 * 17 15 14 19 19 C 1.52993 * 109.47486 * 180.02562 * 18 17 15 20 20 C 1.53046 * 113.14889 * 275.37087 * 19 18 17 21 21 S 1.81430 * 89.88951 * 211.85339 * 20 19 18 22 22 C 1.53050 * 113.15452 * 174.99735 * 19 18 17 23 23 N 1.31930 * 120.84610 * 359.42925 * 13 12 11 24 24 H 0.96996 * 120.00275 * 359.97438 * 1 2 3 25 25 H 1.08000 * 120.43674 * 359.97438 * 10 9 7 26 26 H 1.07997 * 120.66611 * 180.02562 * 11 10 9 27 27 H 1.08005 * 120.25203 * 180.28151 * 12 11 10 28 28 H 0.97004 * 119.99405 * 161.16871 * 14 13 12 29 29 H 0.96998 * 119.99846 * 359.97438 * 17 15 14 30 30 H 1.09002 * 109.47624 * 59.99526 * 18 17 15 31 31 H 1.09006 * 109.46702 * 299.99638 * 18 17 15 32 32 H 1.08999 * 112.49686 * 45.20591 * 19 18 17 33 33 H 1.08995 * 113.15310 * 327.11033 * 20 19 18 34 34 H 1.08997 * 113.14982 * 96.59812 * 20 19 18 35 35 H 1.08998 * 113.14846 * 263.40717 * 22 19 18 36 36 H 1.08999 * 113.14472 * 32.84526 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2415 1.6177 0.0000 4 1 2.3836 2.1072 -1.3948 5 1 1.4956 2.6200 0.8027 6 1 3.5877 1.4120 0.5920 7 6 2.0076 -1.2127 0.0005 8 1 3.0827 -1.2156 -0.1026 9 6 1.3074 -2.4329 0.1359 10 6 2.0213 -3.6368 0.2699 11 6 1.3224 -4.8230 0.4021 12 6 -0.0639 -4.7817 0.4035 13 6 -0.7154 -3.5549 0.2608 14 7 -2.1073 -3.5124 0.2558 15 6 -2.8148 -4.6321 0.0067 16 8 -2.2414 -5.6541 -0.3169 17 7 -4.1580 -4.6189 0.1165 18 6 -4.9271 -5.8361 -0.1537 19 6 -6.4177 -5.5513 0.0409 20 6 -6.8699 -5.6808 1.4972 21 16 -8.5027 -6.2391 0.9370 22 6 -7.3109 -6.7350 -0.3379 23 7 -0.0293 -2.4351 0.1360 24 1 -0.4850 0.8400 0.0004 25 1 3.1013 -3.6354 0.2696 26 1 1.8456 -5.7619 0.5070 27 1 -0.6353 -5.6921 0.5097 28 1 -2.5676 -2.6768 0.4316 29 1 -4.6155 -3.8035 0.3751 30 1 -4.6146 -6.6232 0.5326 31 1 -4.7499 -6.1574 -1.1801 32 1 -6.7274 -4.6149 -0.4231 33 1 -6.3224 -6.4443 2.0498 34 1 -6.9006 -4.7264 2.0228 35 1 -7.7108 -6.6636 -1.3494 36 1 -6.8480 -7.7017 -0.1398 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000881143197.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:29:34 Heat of formation + Delta-G solvation = 38.881529 kcal Electronic energy + Delta-G solvation = -20304.246726 eV Core-core repulsion = 17108.844750 eV Total energy + Delta-G solvation = -3195.401976 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 293.094 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.11530 -38.22571 -37.36755 -34.28548 -33.89211 -33.14997 -30.39503 -29.24193 -26.86307 -26.62979 -25.35928 -22.05862 -21.56597 -21.20375 -20.14479 -18.19289 -17.39276 -17.07760 -16.40947 -16.12442 -15.32281 -15.14083 -14.66961 -14.39296 -14.20595 -13.83665 -13.44985 -13.35095 -13.28221 -12.86627 -12.59172 -12.20821 -11.98662 -11.82828 -11.28035 -11.17899 -11.10478 -10.91036 -10.67145 -10.43203 -10.12851 -9.84575 -9.34148 -9.10825 -8.95539 -8.16041 -8.02625 -7.67584 -7.06292 -6.42464 -4.49817 1.41024 1.53899 2.66539 2.86217 2.95773 3.08490 3.11922 3.24931 3.66624 3.87721 3.94851 4.25903 4.42299 4.65350 4.74124 4.78720 4.91265 5.02115 5.19498 5.31805 5.55738 5.73605 5.90874 6.15458 6.41550 6.45426 6.71152 6.82230 6.92685 7.08873 7.21261 7.51074 7.61615 7.90813 8.06467 8.16670 8.41653 8.70230 8.88180 9.02816 10.05418 10.30990 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.025965 B = 0.003006 C = 0.002743 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1078.127099 B = 9313.050131 C =10204.309652 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.724 5.724 2 C 0.072 3.928 3 Si 0.907 3.093 4 H -0.271 1.271 5 H -0.277 1.277 6 H -0.261 1.261 7 C -0.436 4.436 8 H 0.085 0.915 9 C 0.280 3.720 10 C -0.291 4.291 11 C -0.049 4.049 12 C -0.312 4.312 13 C 0.373 3.627 14 N -0.658 5.658 15 C 0.707 3.293 16 O -0.569 6.569 17 N -0.748 5.748 18 C 0.153 3.847 19 C -0.104 4.104 20 C -0.078 4.078 21 S -0.299 6.299 22 C -0.073 4.073 23 N -0.509 5.509 24 H 0.270 0.730 25 H 0.099 0.901 26 H 0.098 0.902 27 H 0.133 0.867 28 H 0.404 0.596 29 H 0.396 0.604 30 H 0.073 0.927 31 H 0.075 0.925 32 H 0.118 0.882 33 H 0.109 0.891 34 H 0.099 0.901 35 H 0.101 0.899 36 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.395 -6.279 1.086 14.833 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.346 5.346 2 C -0.153 4.153 3 Si 0.731 3.269 4 H -0.196 1.196 5 H -0.202 1.202 6 H -0.185 1.185 7 C -0.468 4.468 8 H 0.103 0.897 9 C 0.154 3.846 10 C -0.314 4.314 11 C -0.074 4.074 12 C -0.337 4.337 13 C 0.138 3.862 14 N -0.305 5.305 15 C 0.407 3.593 16 O -0.446 6.446 17 N -0.406 5.406 18 C 0.026 3.974 19 C -0.124 4.124 20 C -0.227 4.227 21 S -0.073 6.073 22 C -0.222 4.222 23 N -0.228 5.228 24 H 0.081 0.919 25 H 0.117 0.883 26 H 0.116 0.884 27 H 0.150 0.850 28 H 0.238 0.762 29 H 0.230 0.770 30 H 0.091 0.909 31 H 0.093 0.907 32 H 0.136 0.864 33 H 0.127 0.873 34 H 0.118 0.882 35 H 0.119 0.881 36 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -14.960 -6.349 1.080 16.288 hybrid contribution 1.331 0.813 0.043 1.561 sum -13.629 -5.536 1.122 14.753 Atomic orbital electron populations 1.70123 1.07220 1.27439 1.29783 1.26033 0.94872 1.00987 0.93385 0.86331 0.80649 0.80958 0.78964 1.19587 1.20180 1.18506 1.19551 0.94631 0.89349 1.43276 0.89688 1.18165 0.86294 0.92056 0.88108 1.21708 0.98773 0.93760 1.17134 1.20809 0.93711 0.96545 0.96333 1.21612 0.94509 0.98097 1.19521 1.18204 0.81936 0.91343 0.94677 1.42250 1.05589 1.10696 1.71969 1.15740 0.81103 0.83974 0.78515 1.90846 1.68440 1.32042 1.53246 1.45032 1.05111 1.14206 1.76210 1.21125 0.86945 0.86984 1.02313 1.22807 0.95330 0.99835 0.94457 1.24485 0.92210 1.05742 1.00218 1.89094 1.12381 1.76863 1.28937 1.24260 0.94723 1.01695 1.01555 1.68008 1.08422 1.24668 1.21727 0.91914 0.88261 0.88370 0.84988 0.76153 0.77006 0.90910 0.90657 0.86406 0.87296 0.88222 0.88058 0.87201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.72 -18.60 11.49 55.55 0.64 -17.96 16 2 C 0.07 1.79 5.49 -17.34 -0.10 1.70 16 3 Si 0.91 18.32 29.56 -169.99 -5.03 13.29 16 4 H -0.27 -5.41 7.11 56.52 0.40 -5.01 16 5 H -0.28 -5.47 7.11 56.52 0.40 -5.07 16 6 H -0.26 -5.21 7.11 56.52 0.40 -4.81 16 7 C -0.44 -11.59 9.13 -37.74 -0.34 -11.94 16 8 H 0.09 2.12 7.85 -52.48 -0.41 1.71 16 9 C 0.28 7.71 6.54 -85.00 -0.56 7.15 16 10 C -0.29 -7.31 9.83 -38.66 -0.38 -7.69 16 11 C -0.05 -1.17 10.15 -39.39 -0.40 -1.57 16 12 C -0.31 -7.63 8.83 -38.89 -0.34 -7.97 16 13 C 0.37 9.19 7.51 -154.98 -1.16 8.03 16 14 N -0.66 -12.91 5.42 -15.79 -0.09 -13.00 16 15 C 0.71 12.42 8.40 -86.92 -0.73 11.69 16 16 O -0.57 -12.01 13.14 5.30 0.07 -11.94 16 17 N -0.75 -8.67 5.56 -65.23 -0.36 -9.03 16 18 C 0.15 1.41 5.45 -4.05 -0.02 1.39 16 19 C -0.10 -0.69 3.42 -90.57 -0.31 -1.00 16 20 C -0.08 -0.55 7.49 37.18 0.28 -0.27 16 21 S -0.30 -2.69 24.79 -107.50 -2.67 -5.36 16 22 C -0.07 -0.48 7.50 37.18 0.28 -0.20 16 23 N -0.51 -13.82 7.92 -10.26 -0.08 -13.90 16 24 H 0.27 6.26 8.29 -40.82 -0.34 5.92 16 25 H 0.10 2.29 8.06 -52.49 -0.42 1.87 16 26 H 0.10 2.01 8.06 -52.49 -0.42 1.59 16 27 H 0.13 3.19 5.33 -52.50 -0.28 2.91 16 28 H 0.40 7.01 8.84 -40.82 -0.36 6.65 16 29 H 0.40 3.53 8.49 -40.82 -0.35 3.18 16 30 H 0.07 0.71 7.89 -51.93 -0.41 0.30 16 31 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.12 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.11 0.73 7.94 -51.93 -0.41 0.32 16 34 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.10 0.58 8.14 -51.93 -0.42 0.15 16 36 H 0.11 0.62 8.12 -51.93 -0.42 0.20 16 LS Contribution 320.40 15.07 4.83 4.83 Total: -1.00 -32.21 320.40 -10.79 -43.00 By element: Atomic # 1 Polarization: 15.07 SS G_CDS: -4.31 Total: 10.75 kcal Atomic # 6 Polarization: 3.10 SS G_CDS: -3.79 Total: -0.69 kcal Atomic # 7 Polarization: -54.00 SS G_CDS: 0.11 Total: -53.89 kcal Atomic # 8 Polarization: -12.01 SS G_CDS: 0.07 Total: -11.94 kcal Atomic # 14 Polarization: 18.32 SS G_CDS: -5.03 Total: 13.29 kcal Atomic # 16 Polarization: -2.69 SS G_CDS: -2.67 Total: -5.36 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -32.21 -10.79 -43.00 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881143197.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.881 kcal (2) G-P(sol) polarization free energy of solvation -32.212 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.787 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.999 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds