Wall clock time and date at job start Tue Mar 31 2020 06:29:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30749 * 1 3 3 Si 1.86797 * 120.00058 * 2 1 4 4 H 1.48501 * 109.46923 * 274.98786 * 3 2 1 5 5 H 1.48504 * 109.47167 * 34.98233 * 3 2 1 6 6 H 1.48495 * 109.47291 * 154.98478 * 3 2 1 7 7 C 1.40029 * 119.99722 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99353 * 173.66649 * 7 2 1 9 9 C 1.41326 * 120.00333 * 353.67393 * 7 2 1 10 10 C 1.40607 * 119.78901 * 186.32384 * 9 7 2 11 11 C 1.38315 * 119.13350 * 179.97438 * 10 9 7 12 12 C 1.38690 * 118.66541 * 359.72623 * 11 10 9 13 13 C 1.39640 * 119.49935 * 0.55822 * 12 11 10 14 14 N 1.39252 * 119.57661 * 179.70313 * 13 12 11 15 15 C 1.34768 * 119.99823 * 341.17006 * 14 13 12 16 16 O 1.21573 * 120.00621 * 354.20591 * 15 14 13 17 17 N 1.34779 * 119.99892 * 174.20469 * 15 14 13 18 18 C 1.46496 * 120.00378 * 180.02562 * 17 15 14 19 19 C 1.52993 * 109.47486 * 180.02562 * 18 17 15 20 20 C 1.53046 * 113.14889 * 275.37087 * 19 18 17 21 21 S 1.81430 * 89.88951 * 211.85339 * 20 19 18 22 22 C 1.53050 * 113.15452 * 174.99735 * 19 18 17 23 23 N 1.31930 * 120.84610 * 359.42925 * 13 12 11 24 24 H 0.96996 * 120.00275 * 359.97438 * 1 2 3 25 25 H 1.08000 * 120.43674 * 359.97438 * 10 9 7 26 26 H 1.07997 * 120.66611 * 180.02562 * 11 10 9 27 27 H 1.08005 * 120.25203 * 180.28151 * 12 11 10 28 28 H 0.97004 * 119.99405 * 161.16871 * 14 13 12 29 29 H 0.96998 * 119.99846 * 359.97438 * 17 15 14 30 30 H 1.09002 * 109.47624 * 59.99526 * 18 17 15 31 31 H 1.09006 * 109.46702 * 299.99638 * 18 17 15 32 32 H 1.08999 * 112.49686 * 45.20591 * 19 18 17 33 33 H 1.08995 * 113.15310 * 327.11033 * 20 19 18 34 34 H 1.08997 * 113.14982 * 96.59812 * 20 19 18 35 35 H 1.08998 * 113.14846 * 263.40717 * 22 19 18 36 36 H 1.08999 * 113.14472 * 32.84526 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2415 1.6177 0.0000 4 1 2.3836 2.1072 -1.3948 5 1 1.4956 2.6200 0.8027 6 1 3.5877 1.4120 0.5920 7 6 2.0076 -1.2127 0.0005 8 1 3.0827 -1.2156 -0.1026 9 6 1.3074 -2.4329 0.1359 10 6 2.0213 -3.6368 0.2699 11 6 1.3224 -4.8230 0.4021 12 6 -0.0639 -4.7817 0.4035 13 6 -0.7154 -3.5549 0.2608 14 7 -2.1073 -3.5124 0.2558 15 6 -2.8148 -4.6321 0.0067 16 8 -2.2414 -5.6541 -0.3169 17 7 -4.1580 -4.6189 0.1165 18 6 -4.9271 -5.8361 -0.1537 19 6 -6.4177 -5.5513 0.0409 20 6 -6.8699 -5.6808 1.4972 21 16 -8.5027 -6.2391 0.9370 22 6 -7.3109 -6.7350 -0.3379 23 7 -0.0293 -2.4351 0.1360 24 1 -0.4850 0.8400 0.0004 25 1 3.1013 -3.6354 0.2696 26 1 1.8456 -5.7619 0.5070 27 1 -0.6353 -5.6921 0.5097 28 1 -2.5676 -2.6768 0.4316 29 1 -4.6155 -3.8035 0.3751 30 1 -4.6146 -6.6232 0.5326 31 1 -4.7499 -6.1574 -1.1801 32 1 -6.7274 -4.6149 -0.4231 33 1 -6.3224 -6.4443 2.0498 34 1 -6.9006 -4.7264 2.0228 35 1 -7.7108 -6.6636 -1.3494 36 1 -6.8480 -7.7017 -0.1398 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000881143197.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:29:34 Heat of formation + Delta-G solvation = 18.242891 kcal Electronic energy + Delta-G solvation = -20305.141685 eV Core-core repulsion = 17108.844750 eV Total energy + Delta-G solvation = -3196.296935 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 293.094 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.57776 -39.77206 -38.37527 -35.97085 -35.23035 -34.72876 -32.29541 -31.01990 -27.94576 -27.28148 -27.07955 -23.65877 -23.43950 -22.02051 -21.57001 -19.69116 -19.04940 -18.35513 -17.48103 -17.07179 -16.70008 -16.52971 -16.21739 -16.06911 -15.52407 -15.21295 -14.68256 -14.48407 -14.16342 -14.11273 -13.88059 -13.77451 -13.19554 -12.90701 -12.87936 -12.64172 -12.55327 -12.45327 -11.83646 -11.75828 -11.56193 -11.12151 -11.03728 -10.79244 -10.13039 -9.92595 -9.60167 -8.89475 -8.86302 -8.28959 -6.47289 0.83105 0.86025 0.91562 1.15580 1.44719 1.54489 1.59270 1.60946 2.16342 2.26459 2.91285 3.10476 3.38803 3.66583 3.93657 3.95336 4.11558 4.36013 4.39725 4.48494 4.63876 4.66080 4.69273 4.80390 4.91611 4.96493 5.00353 5.11008 5.26901 5.46848 5.62152 5.72634 5.91009 6.00957 6.25170 6.32083 6.77213 6.93941 7.07059 7.54517 8.14071 8.47312 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.025965 B = 0.003006 C = 0.002743 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1078.127099 B = 9313.050131 C =10204.309652 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.752 5.752 2 C 0.027 3.973 3 Si 0.987 3.013 4 H -0.265 1.265 5 H -0.267 1.267 6 H -0.258 1.258 7 C -0.467 4.467 8 H 0.090 0.910 9 C 0.246 3.754 10 C -0.311 4.311 11 C -0.048 4.048 12 C -0.326 4.326 13 C 0.366 3.634 14 N -0.656 5.656 15 C 0.706 3.294 16 O -0.604 6.604 17 N -0.723 5.723 18 C 0.153 3.847 19 C -0.088 4.088 20 C -0.067 4.067 21 S -0.359 6.359 22 C -0.058 4.058 23 N -0.535 5.535 24 H 0.279 0.721 25 H 0.112 0.888 26 H 0.130 0.870 27 H 0.136 0.864 28 H 0.413 0.587 29 H 0.413 0.587 30 H 0.072 0.928 31 H 0.073 0.927 32 H 0.129 0.871 33 H 0.114 0.886 34 H 0.106 0.894 35 H 0.113 0.887 36 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.859 -5.745 1.026 15.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.375 5.375 2 C -0.195 4.195 3 Si 0.808 3.192 4 H -0.190 1.190 5 H -0.192 1.192 6 H -0.181 1.181 7 C -0.499 4.499 8 H 0.108 0.892 9 C 0.120 3.880 10 C -0.334 4.334 11 C -0.073 4.073 12 C -0.350 4.350 13 C 0.129 3.871 14 N -0.304 5.304 15 C 0.406 3.594 16 O -0.484 6.484 17 N -0.380 5.380 18 C 0.027 3.973 19 C -0.108 4.108 20 C -0.215 4.215 21 S -0.133 6.133 22 C -0.207 4.207 23 N -0.255 5.255 24 H 0.090 0.910 25 H 0.130 0.870 26 H 0.148 0.852 27 H 0.154 0.846 28 H 0.249 0.751 29 H 0.249 0.751 30 H 0.091 0.909 31 H 0.092 0.908 32 H 0.147 0.853 33 H 0.132 0.868 34 H 0.125 0.875 35 H 0.131 0.869 36 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -15.504 -5.828 1.029 16.595 hybrid contribution 1.379 0.549 0.054 1.485 sum -14.125 -5.279 1.083 15.118 Atomic orbital electron populations 1.70188 1.08715 1.29011 1.29540 1.26933 0.95799 1.04298 0.92452 0.85123 0.79120 0.75847 0.79154 1.18978 1.19176 1.18119 1.19921 0.95185 0.90306 1.44477 0.89177 1.18674 0.87121 0.93356 0.88875 1.21879 0.99523 0.93772 1.18243 1.21175 0.93749 0.97452 0.94901 1.21836 0.95053 0.98270 1.19883 1.18543 0.83871 0.90987 0.93660 1.42167 1.04066 1.11953 1.72220 1.15900 0.82610 0.82773 0.78159 1.90807 1.69715 1.33010 1.54855 1.44878 1.02945 1.15874 1.74270 1.21282 0.87964 0.85801 1.02230 1.22708 0.93221 1.00527 0.94344 1.24528 0.90292 1.06163 1.00527 1.89389 1.14832 1.77684 1.31392 1.24300 0.93184 1.01993 1.01175 1.68037 1.08643 1.25781 1.23064 0.91030 0.87007 0.85240 0.84615 0.75074 0.75058 0.90939 0.90832 0.85287 0.86802 0.87491 0.86884 0.86136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.75 -38.80 11.49 21.84 0.25 -38.55 16 2 C 0.03 1.35 5.49 85.29 0.47 1.82 16 3 Si 0.99 37.16 29.56 68.60 2.03 39.19 16 4 H -0.26 -9.66 7.11 99.48 0.71 -8.96 16 5 H -0.27 -9.56 7.11 99.48 0.71 -8.85 16 6 H -0.26 -9.44 7.11 99.48 0.71 -8.74 16 7 C -0.47 -25.19 9.13 23.46 0.21 -24.97 16 8 H 0.09 4.55 7.85 -2.91 -0.02 4.53 16 9 C 0.25 13.81 6.54 40.20 0.26 14.07 16 10 C -0.31 -15.84 9.83 22.87 0.22 -15.62 16 11 C -0.05 -2.28 10.15 22.40 0.23 -2.05 16 12 C -0.33 -15.94 8.83 22.72 0.20 -15.74 16 13 C 0.37 18.17 7.51 133.24 1.00 19.17 16 14 N -0.66 -25.55 5.42 -322.15 -1.75 -27.30 16 15 C 0.71 24.10 8.40 179.06 1.50 25.61 16 16 O -0.60 -25.15 13.14 -3.95 -0.05 -25.20 16 17 N -0.72 -15.29 5.56 -478.56 -2.66 -17.95 16 18 C 0.15 2.47 5.45 86.38 0.47 2.94 16 19 C -0.09 -0.93 3.42 -10.76 -0.04 -0.97 16 20 C -0.07 -0.80 7.49 72.00 0.54 -0.26 16 21 S -0.36 -6.03 24.79 -56.49 -1.40 -7.43 16 22 C -0.06 -0.62 7.50 72.00 0.54 -0.08 16 23 N -0.54 -29.56 7.92 -186.38 -1.48 -31.04 16 24 H 0.28 12.85 8.29 -92.71 -0.77 12.08 16 25 H 0.11 5.20 8.06 -2.91 -0.02 5.18 16 26 H 0.13 5.13 8.06 -2.91 -0.02 5.11 16 27 H 0.14 6.53 5.33 -3.14 -0.02 6.52 16 28 H 0.41 14.16 8.84 -92.71 -0.82 13.34 16 29 H 0.41 6.30 8.49 -92.71 -0.79 5.51 16 30 H 0.07 1.25 7.89 -2.39 -0.02 1.23 16 31 H 0.07 1.30 8.14 -2.38 -0.02 1.28 16 32 H 0.13 1.18 8.14 -2.39 -0.02 1.16 16 33 H 0.11 1.28 7.94 -2.39 -0.02 1.26 16 34 H 0.11 1.15 8.14 -2.39 -0.02 1.13 16 35 H 0.11 0.99 8.14 -2.39 -0.02 0.97 16 36 H 0.12 1.07 8.12 -2.39 -0.02 1.05 16 Total: -1.00 -70.64 320.40 0.08 -70.55 By element: Atomic # 1 Polarization: 34.28 SS G_CDS: -0.48 Total: 33.80 kcal Atomic # 6 Polarization: -1.70 SS G_CDS: 5.62 Total: 3.91 kcal Atomic # 7 Polarization: -109.20 SS G_CDS: -5.63 Total: -114.83 kcal Atomic # 8 Polarization: -25.15 SS G_CDS: -0.05 Total: -25.20 kcal Atomic # 14 Polarization: 37.16 SS G_CDS: 2.03 Total: 39.19 kcal Atomic # 16 Polarization: -6.03 SS G_CDS: -1.40 Total: -7.43 kcal Total: -70.64 0.08 -70.55 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881143197.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.795 kcal (2) G-P(sol) polarization free energy of solvation -70.636 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.552 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds