Wall clock time and date at job start Tue Mar 31 2020 06:29:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30743 * 1 3 3 Si 1.86795 * 120.00004 * 2 1 4 4 H 1.48506 * 109.46983 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47146 * 299.99299 * 3 2 1 6 6 H 1.48502 * 109.47315 * 59.99442 * 3 2 1 7 7 C 1.40034 * 119.99802 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99983 * 180.02562 * 7 2 1 9 9 C 1.41332 * 119.99982 * 0.02562 * 7 2 1 10 10 C 1.40610 * 119.78377 * 179.97438 * 9 7 2 11 11 C 1.38316 * 119.12692 * 179.97438 * 10 9 7 12 12 C 1.38685 * 118.66840 * 0.02562 * 11 10 9 13 13 C 1.39640 * 119.50219 * 359.97438 * 12 11 10 14 14 N 1.39253 * 119.57769 * 180.02562 * 13 12 11 15 15 C 1.34782 * 119.99817 * 185.33418 * 14 13 12 16 16 O 1.21576 * 119.99815 * 354.84689 * 15 14 13 17 17 N 1.34777 * 119.99770 * 174.84556 * 15 14 13 18 18 C 1.46503 * 119.99756 * 180.02562 * 17 15 14 19 19 H 1.09000 * 108.73363 * 32.05050 * 18 17 15 20 20 C 1.52934 * 108.88881 * 150.56574 * 18 17 15 21 21 C 1.55144 * 108.96421 * 150.88873 * 20 18 17 22 22 S 1.84210 * 100.96238 * 318.62509 * 21 20 18 23 23 C 1.53713 * 108.88296 * 273.54559 * 18 17 15 24 24 N 1.31929 * 120.84608 * 0.27601 * 13 12 11 25 25 H 0.96999 * 120.00074 * 0.02562 * 1 2 3 26 26 H 1.07994 * 120.43517 * 359.97438 * 10 9 7 27 27 H 1.07995 * 120.66345 * 179.97438 * 11 10 9 28 28 H 1.08001 * 120.25309 * 180.02562 * 12 11 10 29 29 H 0.96992 * 119.99932 * 5.33614 * 14 13 12 30 30 H 0.97000 * 119.99806 * 359.97438 * 17 15 14 31 31 H 1.09000 * 109.60493 * 270.82744 * 20 18 17 32 32 H 1.09001 * 109.60126 * 30.95800 * 20 18 17 33 33 H 1.09003 * 111.13282 * 76.47335 * 21 20 18 34 34 H 1.08998 * 111.13522 * 200.60805 * 21 20 18 35 35 H 1.08997 * 110.34097 * 355.25529 * 23 18 17 36 36 H 1.08997 * 110.34280 * 117.40670 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6177 0.0000 4 1 3.7015 1.3463 0.0006 5 1 1.8828 2.3963 -1.2126 6 1 1.8826 2.3965 1.2124 7 6 2.0076 -1.2128 0.0005 8 1 3.0875 -1.2128 0.0010 9 6 1.3008 -2.4367 0.0005 10 6 2.0084 -3.6518 0.0005 11 6 1.3031 -4.8416 0.0011 12 6 -0.0829 -4.7934 0.0011 13 6 -0.7279 -3.5549 0.0010 14 7 -2.1195 -3.5047 0.0016 15 6 -2.7511 -2.3190 -0.1070 16 8 -2.1092 -1.2865 -0.1109 17 7 -4.0942 -2.2780 -0.2111 18 6 -4.7807 -0.9892 -0.3296 19 1 -4.1332 -0.2957 -0.8662 20 6 -6.0681 -1.1858 -1.1313 21 6 -7.1139 -0.1363 -0.6711 22 16 -6.8564 -0.1616 1.1527 23 6 -5.0444 -0.4345 1.0795 24 7 -0.0358 -2.4318 -0.0044 25 1 -0.4850 0.8400 -0.0004 26 1 3.0884 -3.6559 0.0001 27 1 1.8214 -5.7891 0.0007 28 1 -0.6591 -5.7069 0.0019 29 1 -2.6343 -4.3230 0.0801 30 1 -4.6063 -3.1018 -0.2083 31 1 -5.8612 -1.0546 -2.1934 32 1 -6.4568 -2.1894 -0.9586 33 1 -6.8914 0.8475 -1.0844 34 1 -8.1252 -0.4492 -0.9308 35 1 -4.7395 -1.1587 1.8349 36 1 -4.5135 0.5067 1.2217 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000881147474.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:29:38 Heat of formation + Delta-G solvation = 35.463639 kcal Electronic energy + Delta-G solvation = -21191.219483 eV Core-core repulsion = 17995.669295 eV Total energy + Delta-G solvation = -3195.550187 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 293.094 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.67259 -38.00562 -36.31801 -34.03844 -33.00903 -32.30363 -30.28433 -29.39568 -28.47589 -25.59437 -24.84952 -22.24253 -21.28156 -20.58974 -19.88498 -18.11541 -17.28567 -16.57180 -16.35659 -15.77883 -14.96881 -14.58356 -14.42079 -14.31061 -13.92220 -13.67693 -13.26301 -12.90725 -12.68257 -12.36685 -12.33052 -11.95683 -11.88811 -11.81613 -11.17974 -11.00997 -10.93189 -10.62785 -10.46565 -10.13474 -9.90759 -9.71163 -9.17073 -9.03727 -8.64074 -7.95238 -7.78198 -7.22020 -6.95136 -6.11325 -4.38545 1.74869 2.22325 2.83320 3.12309 3.15795 3.18226 3.21506 3.27316 4.07351 4.11406 4.43072 4.55567 4.77139 4.88066 4.94298 5.00772 5.16491 5.34826 5.48229 5.63031 5.91785 5.98369 6.05335 6.10778 6.47443 6.59520 6.78512 6.85017 6.87860 7.23194 7.33101 7.61873 7.72562 7.82066 8.17122 8.29431 8.62670 8.79661 9.06689 9.53665 10.26745 10.49663 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.015788 B = 0.005010 C = 0.003966 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1773.065233 B = 5587.063569 C = 7057.768986 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.649 5.649 2 C 0.057 3.943 3 Si 0.894 3.106 4 H -0.262 1.262 5 H -0.276 1.276 6 H -0.276 1.276 7 C -0.425 4.425 8 H 0.082 0.918 9 C 0.271 3.729 10 C -0.306 4.306 11 C -0.036 4.036 12 C -0.358 4.358 13 C 0.385 3.615 14 N -0.672 5.672 15 C 0.663 3.337 16 O -0.460 6.460 17 N -0.753 5.753 18 C 0.164 3.836 19 H 0.101 0.899 20 C -0.130 4.130 21 C -0.064 4.064 22 S -0.312 6.312 23 C -0.070 4.070 24 N -0.471 5.471 25 H 0.270 0.730 26 H 0.096 0.904 27 H 0.096 0.904 28 H 0.090 0.910 29 H 0.395 0.605 30 H 0.386 0.614 31 H 0.088 0.912 32 H 0.082 0.918 33 H 0.093 0.907 34 H 0.106 0.894 35 H 0.103 0.897 36 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.090 -1.754 -1.957 13.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.268 5.268 2 C -0.172 4.172 3 Si 0.718 3.282 4 H -0.186 1.186 5 H -0.201 1.201 6 H -0.201 1.201 7 C -0.456 4.456 8 H 0.100 0.900 9 C 0.146 3.854 10 C -0.329 4.329 11 C -0.060 4.060 12 C -0.384 4.384 13 C 0.146 3.854 14 N -0.320 5.320 15 C 0.361 3.639 16 O -0.323 6.323 17 N -0.413 5.413 18 C 0.056 3.944 19 H 0.119 0.881 20 C -0.170 4.170 21 C -0.212 4.212 22 S -0.087 6.087 23 C -0.220 4.220 24 N -0.190 5.190 25 H 0.082 0.918 26 H 0.114 0.886 27 H 0.114 0.886 28 H 0.108 0.892 29 H 0.228 0.772 30 H 0.219 0.781 31 H 0.107 0.893 32 H 0.101 0.899 33 H 0.111 0.889 34 H 0.125 0.875 35 H 0.122 0.878 36 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -13.834 0.392 -1.051 13.879 hybrid contribution 1.030 -1.157 -0.793 1.740 sum -12.804 -0.765 -1.844 12.959 Atomic orbital electron populations 1.70360 1.05598 1.27108 1.23692 1.26188 0.95146 1.00522 0.95390 0.86494 0.80982 0.82376 0.78335 1.18600 1.20110 1.20095 1.19613 0.94072 0.89371 1.42502 0.89953 1.18394 0.87148 0.91953 0.87909 1.21631 0.98559 0.93551 1.19186 1.20544 0.93120 0.96526 0.95818 1.20432 0.94760 0.94791 1.28413 1.18335 0.82396 0.90928 0.93750 1.42542 1.05270 1.07805 1.76417 1.16474 0.81303 0.85615 0.80530 1.91395 1.62195 1.29851 1.48875 1.45490 1.05869 1.07715 1.82252 1.21131 0.93585 0.86570 0.93129 0.88093 1.22594 0.93332 0.99942 1.01105 1.24267 1.02402 1.02256 0.92277 1.87875 1.12601 1.96423 1.11759 1.24574 0.91163 1.05417 1.00834 1.68681 1.06872 1.23090 1.20310 0.91797 0.88585 0.88627 0.89174 0.77195 0.78101 0.89348 0.89939 0.88865 0.87520 0.87839 0.88480 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.65 -17.88 8.98 55.55 0.50 -17.39 16 2 C 0.06 1.50 5.50 -17.34 -0.10 1.40 16 3 Si 0.89 19.27 29.56 -169.99 -5.02 14.25 16 4 H -0.26 -5.54 7.11 56.52 0.40 -5.13 16 5 H -0.28 -5.88 7.11 56.52 0.40 -5.48 16 6 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 7 C -0.42 -11.71 9.14 -37.73 -0.34 -12.06 16 8 H 0.08 2.13 7.85 -52.49 -0.41 1.72 16 9 C 0.27 7.62 6.55 -85.00 -0.56 7.07 16 10 C -0.31 -7.72 9.83 -38.66 -0.38 -8.10 16 11 C -0.04 -0.81 10.15 -39.39 -0.40 -1.21 16 12 C -0.36 -8.00 9.95 -38.89 -0.39 -8.39 16 13 C 0.39 9.35 7.43 -154.98 -1.15 8.20 16 14 N -0.67 -13.01 5.39 -15.79 -0.09 -13.09 16 15 C 0.66 13.00 8.49 -86.91 -0.74 12.27 16 16 O -0.46 -11.28 11.69 5.30 0.06 -11.22 16 17 N -0.75 -10.40 4.86 -58.34 -0.28 -10.69 16 18 C 0.16 2.09 2.99 -67.59 -0.20 1.88 16 19 H 0.10 1.54 7.44 -51.93 -0.39 1.15 16 20 C -0.13 -1.18 5.98 -25.63 -0.15 -1.33 16 21 C -0.06 -0.55 7.53 38.29 0.29 -0.26 16 22 S -0.31 -3.75 23.24 -107.50 -2.50 -6.25 16 23 C -0.07 -0.94 7.11 37.53 0.27 -0.67 16 24 N -0.47 -13.17 5.73 -10.26 -0.06 -13.23 16 25 H 0.27 6.97 8.29 -40.82 -0.34 6.63 16 26 H 0.10 2.25 8.06 -52.49 -0.42 1.83 16 27 H 0.10 1.84 8.06 -52.49 -0.42 1.42 16 28 H 0.09 1.72 8.06 -52.49 -0.42 1.30 16 29 H 0.40 5.84 8.71 -40.82 -0.36 5.48 16 30 H 0.39 4.11 8.36 -40.82 -0.34 3.76 16 31 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.08 0.67 7.72 -51.93 -0.40 0.27 16 33 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.11 0.74 8.14 -51.93 -0.42 0.31 16 35 H 0.10 1.50 7.89 -51.93 -0.41 1.09 16 36 H 0.10 1.39 8.14 -51.93 -0.42 0.97 16 LS Contribution 314.44 15.07 4.74 4.74 Total: -1.00 -32.72 314.44 -10.90 -43.62 By element: Atomic # 1 Polarization: 14.86 SS G_CDS: -4.40 Total: 10.46 kcal Atomic # 6 Polarization: 2.64 SS G_CDS: -3.85 Total: -1.21 kcal Atomic # 7 Polarization: -54.46 SS G_CDS: 0.07 Total: -54.39 kcal Atomic # 8 Polarization: -11.28 SS G_CDS: 0.06 Total: -11.22 kcal Atomic # 14 Polarization: 19.27 SS G_CDS: -5.02 Total: 14.25 kcal Atomic # 16 Polarization: -3.75 SS G_CDS: -2.50 Total: -6.25 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -32.72 -10.90 -43.62 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881147474.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.083 kcal (2) G-P(sol) polarization free energy of solvation -32.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.368 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.904 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.620 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds