Wall clock time and date at job start Tue Mar 31 2020 06:29:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30743 * 1 3 3 Si 1.86795 * 120.00004 * 2 1 4 4 H 1.48506 * 109.46983 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47146 * 299.99299 * 3 2 1 6 6 H 1.48502 * 109.47315 * 59.99442 * 3 2 1 7 7 C 1.40034 * 119.99802 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99983 * 180.02562 * 7 2 1 9 9 C 1.41332 * 119.99982 * 0.02562 * 7 2 1 10 10 C 1.40610 * 119.78377 * 179.97438 * 9 7 2 11 11 C 1.38316 * 119.12692 * 179.97438 * 10 9 7 12 12 C 1.38685 * 118.66840 * 0.02562 * 11 10 9 13 13 C 1.39640 * 119.50219 * 359.97438 * 12 11 10 14 14 N 1.39253 * 119.57769 * 180.02562 * 13 12 11 15 15 C 1.34782 * 119.99817 * 185.33418 * 14 13 12 16 16 O 1.21576 * 119.99815 * 354.84689 * 15 14 13 17 17 N 1.34777 * 119.99770 * 174.84556 * 15 14 13 18 18 C 1.46503 * 119.99756 * 180.02562 * 17 15 14 19 19 H 1.09000 * 108.73363 * 32.05050 * 18 17 15 20 20 C 1.52934 * 108.88881 * 150.56574 * 18 17 15 21 21 C 1.55144 * 108.96421 * 150.88873 * 20 18 17 22 22 S 1.84210 * 100.96238 * 318.62509 * 21 20 18 23 23 C 1.53713 * 108.88296 * 273.54559 * 18 17 15 24 24 N 1.31929 * 120.84608 * 0.27601 * 13 12 11 25 25 H 0.96999 * 120.00074 * 0.02562 * 1 2 3 26 26 H 1.07994 * 120.43517 * 359.97438 * 10 9 7 27 27 H 1.07995 * 120.66345 * 179.97438 * 11 10 9 28 28 H 1.08001 * 120.25309 * 180.02562 * 12 11 10 29 29 H 0.96992 * 119.99932 * 5.33614 * 14 13 12 30 30 H 0.97000 * 119.99806 * 359.97438 * 17 15 14 31 31 H 1.09000 * 109.60493 * 270.82744 * 20 18 17 32 32 H 1.09001 * 109.60126 * 30.95800 * 20 18 17 33 33 H 1.09003 * 111.13282 * 76.47335 * 21 20 18 34 34 H 1.08998 * 111.13522 * 200.60805 * 21 20 18 35 35 H 1.08997 * 110.34097 * 355.25529 * 23 18 17 36 36 H 1.08997 * 110.34280 * 117.40670 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6177 0.0000 4 1 3.7015 1.3463 0.0006 5 1 1.8828 2.3963 -1.2126 6 1 1.8826 2.3965 1.2124 7 6 2.0076 -1.2128 0.0005 8 1 3.0875 -1.2128 0.0010 9 6 1.3008 -2.4367 0.0005 10 6 2.0084 -3.6518 0.0005 11 6 1.3031 -4.8416 0.0011 12 6 -0.0829 -4.7934 0.0011 13 6 -0.7279 -3.5549 0.0010 14 7 -2.1195 -3.5047 0.0016 15 6 -2.7511 -2.3190 -0.1070 16 8 -2.1092 -1.2865 -0.1109 17 7 -4.0942 -2.2780 -0.2111 18 6 -4.7807 -0.9892 -0.3296 19 1 -4.1332 -0.2957 -0.8662 20 6 -6.0681 -1.1858 -1.1313 21 6 -7.1139 -0.1363 -0.6711 22 16 -6.8564 -0.1616 1.1527 23 6 -5.0444 -0.4345 1.0795 24 7 -0.0358 -2.4318 -0.0044 25 1 -0.4850 0.8400 -0.0004 26 1 3.0884 -3.6559 0.0001 27 1 1.8214 -5.7891 0.0007 28 1 -0.6591 -5.7069 0.0019 29 1 -2.6343 -4.3230 0.0801 30 1 -4.6063 -3.1018 -0.2083 31 1 -5.8612 -1.0546 -2.1934 32 1 -6.4568 -2.1894 -0.9586 33 1 -6.8914 0.8475 -1.0844 34 1 -8.1252 -0.4492 -0.9308 35 1 -4.7395 -1.1587 1.8349 36 1 -4.5135 0.5067 1.2217 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000881147474.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:29:37 Heat of formation + Delta-G solvation = 14.552801 kcal Electronic energy + Delta-G solvation = -21192.126244 eV Core-core repulsion = 17995.669295 eV Total energy + Delta-G solvation = -3196.456949 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 293.094 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.21937 -39.69490 -37.59366 -35.82425 -34.82643 -33.49708 -32.17585 -30.90346 -29.83625 -27.45593 -25.90143 -23.87629 -23.09251 -21.70875 -21.43608 -19.81559 -18.82050 -18.10198 -17.51592 -17.06668 -16.49592 -16.25440 -16.04696 -15.64173 -15.47079 -14.98535 -14.71949 -14.66057 -14.04092 -13.83249 -13.62807 -13.15947 -13.03275 -12.89969 -12.84395 -12.71152 -12.52874 -12.30468 -11.88768 -11.73566 -11.52979 -11.06511 -10.85533 -10.85052 -9.97637 -9.85263 -9.10104 -8.79495 -8.73882 -8.01759 -6.39634 0.81485 0.97231 1.28527 1.32417 1.39757 1.51937 1.53855 1.79337 2.27005 2.54858 3.04098 3.32616 3.52764 3.82789 4.00082 4.03715 4.09611 4.23039 4.36677 4.52970 4.67296 4.74796 4.77182 4.86684 4.98126 5.01044 5.01684 5.07887 5.29263 5.64481 5.68858 5.86507 5.93930 6.04183 6.32104 6.43466 6.83062 7.08958 7.24881 8.00780 8.39097 8.59064 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.015788 B = 0.005010 C = 0.003966 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1773.065233 B = 5587.063569 C = 7057.768986 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.683 5.683 2 C 0.011 3.989 3 Si 0.971 3.029 4 H -0.255 1.255 5 H -0.271 1.271 6 H -0.272 1.272 7 C -0.467 4.467 8 H 0.084 0.916 9 C 0.238 3.762 10 C -0.331 4.331 11 C -0.034 4.034 12 C -0.345 4.345 13 C 0.364 3.636 14 N -0.661 5.661 15 C 0.657 3.343 16 O -0.511 6.511 17 N -0.729 5.729 18 C 0.166 3.834 19 H 0.071 0.929 20 C -0.120 4.120 21 C -0.049 4.049 22 S -0.333 6.333 23 C -0.067 4.067 24 N -0.505 5.505 25 H 0.268 0.732 26 H 0.103 0.897 27 H 0.137 0.863 28 H 0.132 0.868 29 H 0.418 0.582 30 H 0.406 0.594 31 H 0.104 0.896 32 H 0.102 0.898 33 H 0.101 0.899 34 H 0.136 0.864 35 H 0.088 0.912 36 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.765 -3.101 -2.739 15.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.302 5.302 2 C -0.215 4.215 3 Si 0.792 3.208 4 H -0.178 1.178 5 H -0.196 1.196 6 H -0.197 1.197 7 C -0.498 4.498 8 H 0.102 0.898 9 C 0.112 3.888 10 C -0.354 4.354 11 C -0.058 4.058 12 C -0.371 4.371 13 C 0.124 3.876 14 N -0.311 5.311 15 C 0.355 3.645 16 O -0.379 6.379 17 N -0.389 5.389 18 C 0.058 3.942 19 H 0.089 0.911 20 C -0.159 4.159 21 C -0.197 4.197 22 S -0.108 6.108 23 C -0.217 4.217 24 N -0.224 5.224 25 H 0.079 0.921 26 H 0.121 0.879 27 H 0.155 0.845 28 H 0.150 0.850 29 H 0.255 0.745 30 H 0.243 0.757 31 H 0.122 0.878 32 H 0.120 0.880 33 H 0.119 0.881 34 H 0.154 0.846 35 H 0.107 0.893 36 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -15.586 -1.024 -1.833 15.727 hybrid contribution 1.426 -0.916 -0.554 1.783 sum -14.160 -1.940 -2.388 14.490 Atomic orbital electron populations 1.70556 1.07033 1.27659 1.24926 1.27005 0.96037 1.03814 0.94604 0.85328 0.79689 0.77422 0.78322 1.17787 1.19576 1.19735 1.19910 0.94380 0.90508 1.44954 0.89783 1.18869 0.87973 0.93332 0.88619 1.21810 0.99183 0.93902 1.20550 1.21021 0.93539 0.97297 0.93945 1.20915 0.95115 0.95600 1.25462 1.18842 0.84223 0.91075 0.93459 1.42378 1.03857 1.08982 1.75892 1.16737 0.82755 0.84938 0.80024 1.91389 1.63887 1.31571 1.51014 1.45163 1.03898 1.09246 1.80631 1.21248 0.94799 0.85221 0.92943 0.91064 1.22531 0.91172 1.01181 1.01027 1.24440 1.03741 1.02761 0.88751 1.87948 1.10721 1.96452 1.15702 1.24351 0.92486 1.03998 1.00827 1.68648 1.07154 1.25289 1.21329 0.92111 0.87878 0.84534 0.85021 0.74520 0.75693 0.87787 0.87990 0.88077 0.84598 0.89337 0.90545 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.68 -39.52 8.98 21.84 0.20 -39.33 16 2 C 0.01 0.61 5.50 85.29 0.47 1.08 16 3 Si 0.97 41.17 29.56 68.60 2.03 43.20 16 4 H -0.25 -10.30 7.11 99.48 0.71 -9.60 16 5 H -0.27 -11.12 7.11 99.48 0.71 -10.41 16 6 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 7 C -0.47 -26.86 9.14 23.47 0.21 -26.64 16 8 H 0.08 4.56 7.85 -2.91 -0.02 4.53 16 9 C 0.24 13.83 6.55 40.20 0.26 14.09 16 10 C -0.33 -16.85 9.83 22.87 0.22 -16.63 16 11 C -0.03 -1.47 10.15 22.40 0.23 -1.24 16 12 C -0.35 -14.62 9.95 22.72 0.23 -14.40 16 13 C 0.36 17.55 7.43 133.24 0.99 18.54 16 14 N -0.66 -24.99 5.39 -322.13 -1.74 -26.73 16 15 C 0.66 25.99 8.49 179.05 1.52 27.51 16 16 O -0.51 -26.19 11.69 -3.95 -0.05 -26.24 16 17 N -0.73 -19.46 4.86 -456.77 -2.22 -21.68 16 18 C 0.17 4.15 2.99 45.21 0.14 4.28 16 19 H 0.07 2.26 7.44 -2.39 -0.02 2.24 16 20 C -0.12 -1.84 5.98 31.31 0.19 -1.65 16 21 C -0.05 -0.70 7.53 72.72 0.55 -0.16 16 22 S -0.33 -7.63 23.24 -56.49 -1.31 -8.94 16 23 C -0.07 -1.83 7.11 72.22 0.51 -1.31 16 24 N -0.50 -29.07 5.73 -186.37 -1.07 -30.14 16 25 H 0.27 14.63 8.29 -92.71 -0.77 13.87 16 26 H 0.10 4.90 8.06 -2.91 -0.02 4.88 16 27 H 0.14 4.73 8.06 -2.91 -0.02 4.71 16 28 H 0.13 4.42 8.06 -2.91 -0.02 4.39 16 29 H 0.42 11.34 8.71 -92.71 -0.81 10.53 16 30 H 0.41 7.65 8.36 -92.71 -0.78 6.87 16 31 H 0.10 1.37 8.14 -2.39 -0.02 1.35 16 32 H 0.10 1.23 7.72 -2.39 -0.02 1.21 16 33 H 0.10 1.35 8.14 -2.39 -0.02 1.33 16 34 H 0.14 1.27 8.14 -2.39 -0.02 1.25 16 35 H 0.09 2.65 7.89 -2.39 -0.02 2.63 16 36 H 0.08 2.36 8.14 -2.39 -0.02 2.34 16 Total: -1.00 -75.69 314.44 0.90 -74.79 By element: Atomic # 1 Polarization: 32.05 SS G_CDS: -0.46 Total: 31.59 kcal Atomic # 6 Polarization: -2.04 SS G_CDS: 5.52 Total: 3.47 kcal Atomic # 7 Polarization: -113.05 SS G_CDS: -4.83 Total: -117.88 kcal Atomic # 8 Polarization: -26.19 SS G_CDS: -0.05 Total: -26.24 kcal Atomic # 14 Polarization: 41.17 SS G_CDS: 2.03 Total: 43.20 kcal Atomic # 16 Polarization: -7.63 SS G_CDS: -1.31 Total: -8.94 kcal Total: -75.69 0.90 -74.79 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881147474.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.342 kcal (2) G-P(sol) polarization free energy of solvation -75.691 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.902 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.789 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.553 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds