Wall clock time and date at job start Tue Mar 31 2020 06:33:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13592 * 1 3 3 C 1.43205 * 179.97438 * 2 1 4 4 C 1.35187 * 123.12955 * 260.26068 * 3 2 1 5 5 S 1.70939 * 108.83449 * 179.97438 * 4 3 2 6 6 C 1.70774 * 91.12949 * 0.28329 * 5 4 3 7 7 C 1.50696 * 124.72969 * 179.87105 * 6 5 4 8 8 N 1.46493 * 109.47181 * 269.95775 * 7 6 5 9 9 C 1.34774 * 120.00367 * 180.02562 * 8 7 6 10 10 O 1.21284 * 119.99763 * 0.02562 * 9 8 7 11 11 C 1.50700 * 120.00425 * 180.02562 * 9 8 7 12 12 C 1.52996 * 109.47359 * 180.02562 * 11 9 8 13 13 C 1.53001 * 109.47483 * 179.97438 * 12 11 9 14 14 C 1.52995 * 109.47488 * 179.97438 * 13 12 11 15 15 C 1.50698 * 109.47120 * 179.97438 * 14 13 12 16 16 H 1.07995 * 120.00480 * 0.02562 * 15 14 13 17 17 C 1.37883 * 119.99873 * 180.02562 * 15 14 13 18 18 N 1.31508 * 120.00151 * 359.97438 * 17 15 14 19 19 Si 1.86798 * 119.99830 * 180.02562 * 17 15 14 20 20 H 1.48494 * 109.47374 * 59.99600 * 19 17 15 21 21 H 1.48502 * 109.47201 * 179.97438 * 19 17 15 22 22 H 1.48499 * 109.47179 * 299.99338 * 19 17 15 23 23 N 1.28714 * 110.54467 * 359.83268 * 6 5 4 24 24 H 1.08000 * 125.58347 * 0.03170 * 4 3 2 25 25 H 1.08998 * 109.47343 * 29.96329 * 7 6 5 26 26 H 1.09009 * 109.47228 * 149.95759 * 7 6 5 27 27 H 0.97000 * 119.99920 * 0.02562 * 8 7 6 28 28 H 1.09005 * 109.46531 * 299.99672 * 11 9 8 29 29 H 1.08997 * 109.47476 * 59.99225 * 11 9 8 30 30 H 1.09001 * 109.47371 * 299.99482 * 12 11 9 31 31 H 1.09005 * 109.47844 * 59.99323 * 12 11 9 32 32 H 1.08998 * 109.47323 * 300.00261 * 13 12 11 33 33 H 1.09009 * 109.46983 * 59.99529 * 13 12 11 34 34 H 1.08993 * 109.47601 * 300.00228 * 14 13 12 35 35 H 1.09004 * 109.47022 * 60.00546 * 14 13 12 36 36 H 0.96998 * 120.00276 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.3067 0.1925 1.1158 5 16 4.9632 0.1211 0.6999 6 6 4.5744 -0.1523 -0.9403 7 6 5.5849 -0.3348 -2.0433 8 7 5.9101 0.9683 -2.6281 9 6 6.7979 1.0508 -3.6389 10 8 7.3271 0.0460 -4.0645 11 6 7.1329 2.3914 -4.2401 12 6 8.1577 2.2060 -5.3609 13 6 8.4974 3.5670 -5.9717 14 6 9.5228 3.3817 -7.0920 15 6 9.8568 4.7222 -7.6941 16 1 9.3854 5.6169 -7.3153 17 6 10.7645 4.8063 -8.7286 18 7 11.3390 3.7169 -9.1896 19 14 11.1791 6.4680 -9.4744 20 1 11.7468 7.3534 -8.4261 21 1 12.1742 6.2882 -10.5619 22 1 9.9463 7.0837 -10.0279 23 7 3.2979 -0.1816 -1.1031 24 1 2.9146 0.3621 2.1077 25 1 6.4895 -0.7864 -1.6362 26 1 5.1691 -0.9850 -2.8131 27 1 5.4866 1.7719 -2.2879 28 1 6.2282 2.8435 -4.6467 29 1 7.5492 3.0411 -3.4703 30 1 9.0625 1.7537 -4.9547 31 1 7.7410 1.5564 -6.1307 32 1 7.5926 4.0190 -6.3780 33 1 8.9141 4.2169 -5.2021 34 1 10.4276 2.9299 -6.6855 35 1 9.1064 2.7317 -7.8618 36 1 11.9772 3.7761 -9.9177 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000887978927.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:33:00 Heat of formation + Delta-G solvation = 17.215911 kcal Electronic energy + Delta-G solvation = -18892.290855 eV Core-core repulsion = 15695.949387 eV Total energy + Delta-G solvation = -3196.341468 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 293.094 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.83784 -39.70289 -36.99233 -35.43436 -34.79051 -32.65896 -31.84391 -29.90635 -28.16858 -26.12291 -25.18745 -22.45850 -21.57098 -20.44618 -20.00277 -19.90609 -17.75729 -17.10174 -16.59502 -16.12106 -15.94390 -15.50804 -15.20477 -14.51552 -14.42022 -13.94252 -13.88781 -13.72226 -13.50644 -13.25310 -13.03061 -12.60464 -12.38425 -12.11835 -11.70061 -11.60802 -10.96695 -10.58029 -10.54009 -10.53178 -10.48743 -10.40997 -10.01695 -9.61305 -9.59963 -9.39838 -9.21766 -8.98637 -8.29469 -5.94368 -3.96891 -0.31374 0.43999 0.83890 1.20523 1.97287 2.61237 2.82421 2.96250 3.13910 3.35902 3.40383 3.42525 3.69811 4.28858 4.37866 4.49539 4.67834 4.86674 5.06843 5.22913 5.30729 5.35137 5.40937 5.82520 6.03474 6.13121 6.29316 6.54023 6.68237 6.83728 6.87478 7.01434 7.18956 7.25394 7.74644 7.90832 8.06836 8.11480 8.48654 9.10622 9.66604 11.16851 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.034196 B = 0.002012 C = 0.001975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 818.607281 B =13911.575728 C =14172.350911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.388 5.388 2 C 0.287 3.713 3 C 0.125 3.875 4 C -0.240 4.240 5 S 0.275 5.725 6 C 0.009 3.991 7 C 0.197 3.803 8 N -0.736 5.736 9 C 0.517 3.483 10 O -0.529 6.529 11 C -0.137 4.137 12 C -0.104 4.104 13 C -0.111 4.111 14 C 0.020 3.980 15 C -0.521 4.521 16 H 0.054 0.946 17 C 0.055 3.945 18 N -0.895 5.895 19 Si 0.892 3.108 20 H -0.277 1.277 21 H -0.288 1.288 22 H -0.277 1.277 23 N -0.420 5.420 24 H 0.194 0.806 25 H 0.096 0.904 26 H 0.102 0.898 27 H 0.403 0.597 28 H 0.092 0.908 29 H 0.093 0.907 30 H 0.064 0.936 31 H 0.064 0.936 32 H 0.047 0.953 33 H 0.047 0.953 34 H 0.016 0.984 35 H 0.016 0.984 36 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.997 -7.703 25.532 30.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.064 5.064 2 C -0.032 4.032 3 C -0.012 4.012 4 C -0.385 4.385 5 S 0.533 5.467 6 C -0.270 4.270 7 C 0.071 3.929 8 N -0.392 5.392 9 C 0.305 3.695 10 O -0.404 6.404 11 C -0.177 4.177 12 C -0.142 4.142 13 C -0.148 4.148 14 C -0.017 4.017 15 C -0.559 4.559 16 H 0.072 0.928 17 C -0.146 4.146 18 N -0.534 5.534 19 Si 0.720 3.280 20 H -0.203 1.203 21 H -0.213 1.213 22 H -0.203 1.203 23 N -0.135 5.135 24 H 0.211 0.789 25 H 0.114 0.886 26 H 0.120 0.880 27 H 0.237 0.763 28 H 0.111 0.889 29 H 0.111 0.889 30 H 0.083 0.917 31 H 0.083 0.917 32 H 0.065 0.935 33 H 0.065 0.935 34 H 0.034 0.966 35 H 0.034 0.966 36 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -14.467 -8.528 25.059 30.166 hybrid contribution -0.707 1.248 -0.252 1.456 sum -15.174 -7.280 24.807 29.977 Atomic orbital electron populations 1.81304 1.11113 1.07787 1.06203 1.24150 0.90649 0.94149 0.94282 1.15596 0.87818 1.09174 0.88598 1.26741 0.99339 1.07667 1.04729 1.83233 1.01702 1.59650 1.02147 1.27103 0.94002 1.05986 0.99929 1.19736 0.93901 0.87635 0.91678 1.46088 1.46377 1.08728 1.38006 1.21151 0.77517 0.92554 0.78276 1.90734 1.51301 1.38041 1.60332 1.21806 1.02330 0.93219 1.00377 1.21467 0.97359 0.99544 0.95820 1.21652 1.00093 0.93947 0.99134 1.19092 0.93374 0.96846 0.92424 1.21245 1.24048 0.93524 1.17119 0.92818 1.25043 0.96220 0.96385 0.96938 1.69958 1.28900 1.27441 1.27132 0.86671 0.78110 0.84462 0.78807 1.20305 1.21337 1.20299 1.66900 1.04129 1.13530 1.28902 0.78917 0.88603 0.88022 0.76309 0.88939 0.88920 0.91702 0.91721 0.93459 0.93457 0.96569 0.96581 0.92992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.39 -4.24 18.54 41.83 0.78 -3.47 16 2 C 0.29 2.54 15.75 -22.47 -0.35 2.18 16 3 C 0.12 0.86 6.55 -86.29 -0.57 0.29 16 4 C -0.24 -0.86 10.89 29.65 0.32 -0.53 16 5 S 0.27 0.81 22.92 -107.50 -2.46 -1.65 16 6 C 0.01 0.06 6.71 -13.59 -0.09 -0.04 16 7 C 0.20 1.41 6.24 -5.20 -0.03 1.38 16 8 N -0.74 -5.99 5.55 -61.48 -0.34 -6.33 16 9 C 0.52 6.25 7.83 -10.99 -0.09 6.17 16 10 O -0.53 -8.62 15.98 5.55 0.09 -8.53 16 11 C -0.14 -1.64 5.70 -27.89 -0.16 -1.80 16 12 C -0.10 -1.76 4.50 -26.73 -0.12 -1.88 16 13 C -0.11 -2.21 5.15 -26.73 -0.14 -2.35 16 14 C 0.02 0.52 4.97 -27.89 -0.14 0.38 16 15 C -0.52 -14.89 9.11 -34.44 -0.31 -15.20 16 16 H 0.05 1.47 7.74 -52.49 -0.41 1.07 16 17 C 0.06 1.60 5.46 -17.82 -0.10 1.51 16 18 N -0.90 -27.33 13.29 55.43 0.74 -26.60 16 19 Si 0.89 21.78 29.54 -169.99 -5.02 16.76 16 20 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 21 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 22 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 23 N -0.42 -3.40 10.67 -9.65 -0.10 -3.51 16 24 H 0.19 0.15 8.06 -52.49 -0.42 -0.27 16 25 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.10 0.87 8.14 -51.92 -0.42 0.44 16 27 H 0.40 2.34 8.46 -40.82 -0.35 1.99 16 28 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 29 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 30 H 0.06 1.16 8.10 -51.93 -0.42 0.74 16 31 H 0.06 1.18 8.10 -51.93 -0.42 0.76 16 32 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 33 H 0.05 0.90 8.14 -51.92 -0.42 0.48 16 34 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 35 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 LS Contribution 340.57 15.07 5.13 5.13 Total: -1.00 -35.49 340.57 -7.50 -42.99 By element: Atomic # 1 Polarization: -0.37 SS G_CDS: -4.53 Total: -4.91 kcal Atomic # 6 Polarization: -8.12 SS G_CDS: -1.77 Total: -9.89 kcal Atomic # 7 Polarization: -40.97 SS G_CDS: 1.07 Total: -39.90 kcal Atomic # 8 Polarization: -8.62 SS G_CDS: 0.09 Total: -8.53 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Atomic # 16 Polarization: 0.81 SS G_CDS: -2.46 Total: -1.65 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -35.49 -7.50 -42.99 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000887978927.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.208 kcal (2) G-P(sol) polarization free energy of solvation -35.491 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.992 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds