Wall clock time and date at job start Tue Mar 31 2020 06:32:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13592 * 1 3 3 C 1.43205 * 179.97438 * 2 1 4 4 C 1.35187 * 123.12955 * 260.26068 * 3 2 1 5 5 S 1.70939 * 108.83449 * 179.97438 * 4 3 2 6 6 C 1.70774 * 91.12949 * 0.28329 * 5 4 3 7 7 C 1.50696 * 124.72969 * 179.87105 * 6 5 4 8 8 N 1.46493 * 109.47181 * 269.95775 * 7 6 5 9 9 C 1.34774 * 120.00367 * 180.02562 * 8 7 6 10 10 O 1.21284 * 119.99763 * 0.02562 * 9 8 7 11 11 C 1.50700 * 120.00425 * 180.02562 * 9 8 7 12 12 C 1.52996 * 109.47359 * 180.02562 * 11 9 8 13 13 C 1.53001 * 109.47483 * 179.97438 * 12 11 9 14 14 C 1.52995 * 109.47488 * 179.97438 * 13 12 11 15 15 C 1.50698 * 109.47120 * 179.97438 * 14 13 12 16 16 H 1.07995 * 120.00480 * 0.02562 * 15 14 13 17 17 C 1.37883 * 119.99873 * 180.02562 * 15 14 13 18 18 N 1.31508 * 120.00151 * 359.97438 * 17 15 14 19 19 Si 1.86798 * 119.99830 * 180.02562 * 17 15 14 20 20 H 1.48494 * 109.47374 * 59.99600 * 19 17 15 21 21 H 1.48502 * 109.47201 * 179.97438 * 19 17 15 22 22 H 1.48499 * 109.47179 * 299.99338 * 19 17 15 23 23 N 1.28714 * 110.54467 * 359.83268 * 6 5 4 24 24 H 1.08000 * 125.58347 * 0.03170 * 4 3 2 25 25 H 1.08998 * 109.47343 * 29.96329 * 7 6 5 26 26 H 1.09009 * 109.47228 * 149.95759 * 7 6 5 27 27 H 0.97000 * 119.99920 * 0.02562 * 8 7 6 28 28 H 1.09005 * 109.46531 * 299.99672 * 11 9 8 29 29 H 1.08997 * 109.47476 * 59.99225 * 11 9 8 30 30 H 1.09001 * 109.47371 * 299.99482 * 12 11 9 31 31 H 1.09005 * 109.47844 * 59.99323 * 12 11 9 32 32 H 1.08998 * 109.47323 * 300.00261 * 13 12 11 33 33 H 1.09009 * 109.46983 * 59.99529 * 13 12 11 34 34 H 1.08993 * 109.47601 * 300.00228 * 14 13 12 35 35 H 1.09004 * 109.47022 * 60.00546 * 14 13 12 36 36 H 0.96998 * 120.00276 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.3067 0.1925 1.1158 5 16 4.9632 0.1211 0.6999 6 6 4.5744 -0.1523 -0.9403 7 6 5.5849 -0.3348 -2.0433 8 7 5.9101 0.9683 -2.6281 9 6 6.7979 1.0508 -3.6389 10 8 7.3271 0.0460 -4.0645 11 6 7.1329 2.3914 -4.2401 12 6 8.1577 2.2060 -5.3609 13 6 8.4974 3.5670 -5.9717 14 6 9.5228 3.3817 -7.0920 15 6 9.8568 4.7222 -7.6941 16 1 9.3854 5.6169 -7.3153 17 6 10.7645 4.8063 -8.7286 18 7 11.3390 3.7169 -9.1896 19 14 11.1791 6.4680 -9.4744 20 1 11.7468 7.3534 -8.4261 21 1 12.1742 6.2882 -10.5619 22 1 9.9463 7.0837 -10.0279 23 7 3.2979 -0.1816 -1.1031 24 1 2.9146 0.3621 2.1077 25 1 6.4895 -0.7864 -1.6362 26 1 5.1691 -0.9850 -2.8131 27 1 5.4866 1.7719 -2.2879 28 1 6.2282 2.8435 -4.6467 29 1 7.5492 3.0411 -3.4703 30 1 9.0625 1.7537 -4.9547 31 1 7.7410 1.5564 -6.1307 32 1 7.5926 4.0190 -6.3780 33 1 8.9141 4.2169 -5.2021 34 1 10.4276 2.9299 -6.6855 35 1 9.1064 2.7317 -7.8618 36 1 11.9772 3.7761 -9.9177 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000887978927.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:32:59 Heat of formation + Delta-G solvation = -8.086946 kcal Electronic energy + Delta-G solvation = -18893.388070 eV Core-core repulsion = 15695.949387 eV Total energy + Delta-G solvation = -3197.438682 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 293.094 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.32882 -40.61103 -37.68867 -36.69245 -35.97394 -34.57238 -32.51880 -31.37324 -28.97947 -27.28346 -26.22836 -24.05745 -22.15130 -21.77438 -21.26090 -20.37214 -18.39247 -18.18641 -17.95937 -17.25332 -16.91804 -16.48421 -16.09792 -15.87937 -15.51249 -14.83394 -14.65013 -14.52145 -14.42222 -14.17587 -13.96108 -13.84208 -13.55547 -13.37481 -13.21266 -12.75945 -12.75530 -12.35606 -12.10706 -12.06818 -11.32503 -11.31890 -11.17228 -11.00773 -10.90268 -10.69315 -10.51559 -10.17833 -9.99668 -8.15972 -6.27839 -0.66498 0.12145 0.47633 0.67362 1.35411 1.42127 1.45933 1.53704 1.67967 2.16329 2.38424 2.44258 2.56074 3.16542 3.20752 3.85299 3.94263 4.08347 4.13375 4.21400 4.30602 4.56443 4.65824 4.74780 4.75422 4.91734 4.93661 5.25680 5.29792 5.37932 5.45162 5.61569 5.83002 5.92018 6.17214 6.28645 6.36908 6.51148 6.90738 7.25611 7.41470 8.95844 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.034196 B = 0.002012 C = 0.001975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 818.607281 B =13911.575728 C =14172.350911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.439 5.439 2 C 0.307 3.693 3 C 0.091 3.909 4 C -0.217 4.217 5 S 0.366 5.634 6 C -0.015 4.015 7 C 0.197 3.803 8 N -0.717 5.717 9 C 0.519 3.481 10 O -0.580 6.580 11 C -0.128 4.128 12 C -0.097 4.097 13 C -0.097 4.097 14 C 0.018 3.982 15 C -0.542 4.542 16 H 0.066 0.934 17 C -0.007 4.007 18 N -0.937 5.937 19 Si 0.968 3.032 20 H -0.264 1.264 21 H -0.286 1.286 22 H -0.266 1.266 23 N -0.452 5.452 24 H 0.225 0.775 25 H 0.108 0.892 26 H 0.082 0.918 27 H 0.417 0.583 28 H 0.115 0.885 29 H 0.125 0.875 30 H 0.047 0.953 31 H 0.041 0.959 32 H 0.058 0.942 33 H 0.063 0.937 34 H -0.013 1.013 35 H -0.017 1.017 36 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.123 -5.720 28.118 31.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.116 5.116 2 C -0.011 4.011 3 C -0.045 4.045 4 C -0.362 4.362 5 S 0.623 5.377 6 C -0.293 4.293 7 C 0.070 3.930 8 N -0.372 5.372 9 C 0.307 3.693 10 O -0.459 6.459 11 C -0.168 4.168 12 C -0.135 4.135 13 C -0.134 4.134 14 C -0.019 4.019 15 C -0.580 4.580 16 H 0.084 0.916 17 C -0.205 4.205 18 N -0.577 5.577 19 Si 0.793 3.207 20 H -0.188 1.188 21 H -0.212 1.212 22 H -0.191 1.191 23 N -0.168 5.168 24 H 0.242 0.758 25 H 0.126 0.874 26 H 0.100 0.900 27 H 0.254 0.746 28 H 0.133 0.867 29 H 0.143 0.857 30 H 0.066 0.934 31 H 0.060 0.940 32 H 0.076 0.924 33 H 0.081 0.919 34 H 0.005 0.995 35 H 0.002 0.998 36 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -14.632 -6.520 27.687 31.987 hybrid contribution -0.598 0.581 -0.961 1.272 sum -15.230 -5.939 26.726 31.329 Atomic orbital electron populations 1.81308 1.12533 1.10016 1.07765 1.24503 0.91110 0.92599 0.92865 1.15540 0.86855 1.12516 0.89599 1.27210 0.99908 1.03959 1.05130 1.83012 0.99738 1.56753 0.98190 1.26809 0.93215 1.07571 1.01720 1.19715 0.94736 0.86645 0.91863 1.45858 1.44762 1.09998 1.36544 1.21099 0.77668 0.91820 0.78671 1.90725 1.53535 1.39505 1.62175 1.21676 1.01763 0.93925 0.99428 1.21255 0.98245 0.97075 0.96938 1.21453 0.98554 0.95990 0.97417 1.19065 0.93859 0.95380 0.93643 1.21739 1.24167 0.94624 1.17440 0.91613 1.26087 0.96066 1.00775 0.97539 1.70119 1.29637 1.30182 1.27795 0.85453 0.78153 0.79142 0.77996 1.18846 1.21162 1.19073 1.66799 1.05286 1.14295 1.30450 0.75850 0.87372 0.90023 0.74583 0.86729 0.85745 0.93373 0.94028 0.92362 0.91866 0.99488 0.99834 0.92901 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -9.79 18.54 19.00 0.35 -9.44 16 2 C 0.31 5.33 15.75 88.33 1.39 6.72 16 3 C 0.09 1.10 6.55 39.43 0.26 1.36 16 4 C -0.22 -0.80 10.89 67.12 0.73 -0.07 16 5 S 0.37 0.76 22.92 -56.49 -1.29 -0.54 16 6 C -0.01 -0.15 6.71 88.56 0.59 0.45 16 7 C 0.20 2.60 6.24 85.63 0.53 3.13 16 8 N -0.72 -10.35 5.55 -466.80 -2.59 -12.94 16 9 C 0.52 11.99 7.83 87.66 0.69 12.68 16 10 O -0.58 -19.21 15.98 -3.04 -0.05 -19.26 16 11 C -0.13 -2.79 5.70 29.85 0.17 -2.62 16 12 C -0.10 -3.30 4.50 30.59 0.14 -3.16 16 13 C -0.10 -3.82 5.15 30.59 0.16 -3.66 16 14 C 0.02 0.96 4.97 29.85 0.15 1.10 16 15 C -0.54 -31.14 9.11 25.60 0.23 -30.91 16 16 H 0.07 3.53 7.74 -2.91 -0.02 3.51 16 17 C -0.01 -0.44 5.46 84.66 0.46 0.02 16 18 N -0.94 -58.65 13.29 21.45 0.28 -58.37 16 19 Si 0.97 44.53 29.54 68.60 2.03 46.56 16 20 H -0.26 -11.48 7.11 99.48 0.71 -10.77 16 21 H -0.29 -12.97 7.11 99.48 0.71 -12.26 16 22 H -0.27 -11.66 7.11 99.48 0.71 -10.96 16 23 N -0.45 -6.84 10.67 -184.43 -1.97 -8.81 16 24 H 0.22 -0.67 8.06 -2.91 -0.02 -0.70 16 25 H 0.11 1.17 8.14 -2.39 -0.02 1.15 16 26 H 0.08 1.43 8.14 -2.38 -0.02 1.41 16 27 H 0.42 3.63 8.46 -92.71 -0.78 2.85 16 28 H 0.11 2.04 8.14 -2.38 -0.02 2.02 16 29 H 0.12 1.96 8.14 -2.39 -0.02 1.95 16 30 H 0.05 1.77 8.10 -2.39 -0.02 1.76 16 31 H 0.04 1.58 8.10 -2.38 -0.02 1.56 16 32 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16 33 H 0.06 2.30 8.14 -2.38 -0.02 2.28 16 34 H -0.01 -0.79 8.14 -2.39 -0.02 -0.80 16 35 H -0.02 -1.00 8.14 -2.38 -0.02 -1.02 16 36 H 0.26 15.43 8.31 -92.71 -0.77 14.66 16 Total: -1.00 -81.56 340.57 2.59 -78.97 By element: Atomic # 1 Polarization: -1.55 SS G_CDS: 0.33 Total: -1.23 kcal Atomic # 6 Polarization: -20.46 SS G_CDS: 5.50 Total: -14.95 kcal Atomic # 7 Polarization: -85.63 SS G_CDS: -3.92 Total: -89.55 kcal Atomic # 8 Polarization: -19.21 SS G_CDS: -0.05 Total: -19.26 kcal Atomic # 14 Polarization: 44.53 SS G_CDS: 2.03 Total: 46.56 kcal Atomic # 16 Polarization: 0.76 SS G_CDS: -1.29 Total: -0.54 kcal Total: -81.56 2.59 -78.97 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000887978927.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.881 kcal (2) G-P(sol) polarization free energy of solvation -81.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.679 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.593 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.968 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds