Wall clock time and date at job start Tue Mar 31 2020 06:55:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17395 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 S 1.81398 * 109.47216 * 29.75799 * 3 2 1 5 5 C 1.81401 * 102.99825 * 179.97438 * 4 3 2 6 6 C 1.50706 * 109.47089 * 180.02562 * 5 4 3 7 7 O 1.21293 * 120.00109 * 359.97438 * 6 5 4 8 8 N 1.34779 * 119.99978 * 180.02562 * 6 5 4 9 9 C 1.39471 * 119.99891 * 179.97438 * 8 6 5 10 10 C 1.36110 * 126.21626 * 0.14378 * 9 8 6 11 11 C 1.39762 * 107.82869 * 180.26709 * 10 9 8 12 12 C 1.50694 * 125.84077 * 179.72419 * 11 10 9 13 13 N 1.30855 * 108.31847 * 359.75600 * 11 10 9 14 14 N 1.35266 * 126.21450 * 180.02562 * 9 8 6 15 15 C 1.46491 * 126.04623 * 359.97438 * 14 9 8 16 16 C 1.50702 * 109.46957 * 269.71277 * 15 14 9 17 17 H 1.08002 * 120.00299 * 0.02562 * 16 15 14 18 18 C 1.37884 * 119.99942 * 179.72213 * 16 15 14 19 19 N 1.31514 * 119.99698 * 0.28408 * 18 16 15 20 20 Si 1.86794 * 119.99837 * 180.27476 * 18 16 15 21 21 H 1.48496 * 109.47341 * 0.02562 * 20 18 16 22 22 H 1.48508 * 109.46983 * 120.00379 * 20 18 16 23 23 H 1.48503 * 109.47491 * 240.00192 * 20 18 16 24 24 H 4.62818 * 6.06435 * 179.97438 * 4 1 2 25 25 H 1.09000 * 109.47327 * 269.75501 * 3 2 1 26 26 H 1.08999 * 109.46851 * 149.75695 * 3 2 1 27 27 H 1.08994 * 109.47451 * 59.99940 * 5 4 3 28 28 H 1.09002 * 109.47152 * 299.99572 * 5 4 3 29 29 H 0.97004 * 120.00013 * 359.97438 * 8 6 5 30 30 H 1.07999 * 126.09101 * 0.05355 * 10 9 8 31 31 H 1.09003 * 109.47188 * 270.01578 * 12 11 10 32 32 H 1.08998 * 109.47119 * 30.01737 * 12 11 10 33 33 H 1.09003 * 109.47108 * 150.01312 * 12 11 10 34 34 H 1.09004 * 109.47166 * 149.71543 * 15 14 9 35 35 H 1.08994 * 109.47507 * 29.71250 * 15 14 9 36 36 H 0.97005 * 119.99651 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 16 3.2513 -1.4838 -0.8488 5 6 5.0537 -1.3050 -0.7480 6 6 5.7135 -2.4808 -1.4213 7 8 5.0347 -3.3538 -1.9196 8 7 7.0580 -2.5629 -1.4687 9 6 7.6687 -3.6513 -2.0913 10 6 7.0335 -4.6951 -2.6910 11 6 8.0105 -5.5661 -3.1810 12 6 7.7539 -6.8581 -3.9129 13 7 9.1863 -5.0681 -2.8949 14 7 8.9997 -3.8603 -2.2107 15 6 10.0587 -2.9815 -1.7085 16 6 10.4268 -1.9796 -2.7724 17 1 9.9220 -1.9957 -3.7271 18 6 11.4036 -1.0385 -2.5249 19 7 12.0180 -1.0188 -1.3622 20 14 11.8544 0.2081 -3.8409 21 1 11.0232 -0.0251 -5.0492 22 1 11.6080 1.5800 -3.3284 23 1 13.2900 0.0610 -4.1913 24 1 -1.0498 -0.0005 0.0000 25 1 3.0093 0.0052 1.0276 26 1 3.0088 0.8886 -0.5176 27 1 5.3572 -1.2676 0.2981 28 1 5.3560 -0.3844 -1.2472 29 1 7.6009 -1.8649 -1.0698 30 1 5.9648 -4.8285 -2.7708 31 1 7.6890 -7.6758 -3.1950 32 1 6.8165 -6.7834 -4.4642 33 1 8.5704 -7.0497 -4.6091 34 1 10.9346 -3.5776 -1.4522 35 1 9.7048 -2.4560 -0.8216 36 1 12.7055 -0.3569 -1.1882 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000888555731.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:55:35 Heat of formation + Delta-G solvation = 97.034513 kcal Electronic energy + Delta-G solvation = -20003.082012 eV Core-core repulsion = 16810.201738 eV Total energy + Delta-G solvation = -3192.880274 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 293.094 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.89702 -39.18673 -34.81946 -34.30745 -33.80687 -32.12590 -30.77647 -29.10982 -28.81062 -27.74041 -26.06454 -22.98635 -21.80983 -19.83763 -19.49573 -18.66967 -17.09295 -16.78624 -16.59955 -16.23624 -15.85172 -14.99912 -14.74762 -14.68626 -14.36918 -14.17869 -13.96808 -13.45980 -12.98613 -12.88583 -12.77582 -12.52321 -12.04843 -11.79765 -11.60792 -11.09844 -10.94840 -10.94104 -10.67113 -10.44746 -10.38275 -10.04410 -10.03338 -9.82710 -9.57269 -8.76819 -7.96925 -7.87951 -7.48204 -6.37759 -4.46207 0.87845 2.09655 2.14913 2.47744 2.74380 2.91626 3.04461 3.11717 3.21140 3.27250 3.56053 3.73716 3.92734 4.20792 4.50818 4.75302 4.82619 4.95687 4.96368 4.98148 5.34253 5.56963 5.61471 6.02546 6.13726 6.14308 6.22178 6.37595 6.62597 6.79425 7.00426 7.22850 7.45386 7.53022 7.57650 7.75283 7.83684 8.19561 8.58265 8.67344 9.21664 10.69358 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.012513 B = 0.004064 C = 0.003225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2237.066331 B = 6888.934197 C = 8679.946590 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.179 4.179 3 C -0.002 4.002 4 S -0.152 6.152 5 C -0.130 4.130 6 C 0.537 3.463 7 O -0.494 6.494 8 N -0.635 5.635 9 C 0.301 3.699 10 C -0.293 4.293 11 C 0.051 3.949 12 C -0.062 4.062 13 N -0.284 5.284 14 N -0.344 5.344 15 C 0.256 3.744 16 C -0.540 4.540 17 H 0.066 0.934 18 C 0.066 3.934 19 N -0.890 5.890 20 Si 0.906 3.094 21 H -0.271 1.271 22 H -0.281 1.281 23 H -0.279 1.279 24 H 0.223 0.777 25 H 0.105 0.895 26 H 0.106 0.894 27 H 0.118 0.882 28 H 0.119 0.881 29 H 0.417 0.583 30 H 0.162 0.838 31 H 0.068 0.932 32 H 0.070 0.930 33 H 0.066 0.934 34 H 0.057 0.943 35 H 0.044 0.956 36 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.231 2.180 4.137 16.891 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.180 4.180 3 C -0.148 4.148 4 S 0.076 5.924 5 C -0.282 4.282 6 C 0.321 3.679 7 O -0.367 6.367 8 N -0.283 5.283 9 C 0.078 3.922 10 C -0.325 4.325 11 C -0.114 4.114 12 C -0.121 4.121 13 N -0.109 5.109 14 N -0.129 5.129 15 C 0.138 3.862 16 C -0.578 4.578 17 H 0.084 0.916 18 C -0.137 4.137 19 N -0.528 5.528 20 Si 0.733 3.267 21 H -0.195 1.195 22 H -0.206 1.206 23 H -0.205 1.205 24 H 0.240 0.760 25 H 0.124 0.876 26 H 0.124 0.876 27 H 0.136 0.864 28 H 0.137 0.863 29 H 0.254 0.746 30 H 0.179 0.821 31 H 0.087 0.913 32 H 0.089 0.911 33 H 0.085 0.915 34 H 0.075 0.925 35 H 0.062 0.938 36 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -15.740 0.792 3.407 16.124 hybrid contribution 0.603 2.518 0.344 2.612 sum -15.137 3.309 3.751 15.942 Atomic orbital electron populations 1.24887 0.95761 0.98854 0.99697 1.21701 0.92954 1.01852 1.01533 1.20297 0.89199 1.00839 1.04508 1.87860 1.00046 1.28904 1.75574 1.23477 0.97229 1.01582 1.05877 1.19461 0.81259 0.86924 0.80284 1.90697 1.62555 1.39180 1.44255 1.42590 1.06573 1.23093 1.56004 1.17868 0.85151 0.90089 0.99085 1.21283 1.00980 0.96845 1.13375 1.22038 0.90848 0.97899 1.00578 1.20024 1.01936 0.91424 0.98737 1.77366 1.21458 0.96019 1.16071 1.49354 1.03299 1.17280 1.42982 1.19630 0.84505 0.87384 0.94661 1.21387 1.21754 1.14095 1.00603 0.91617 1.24944 0.95208 0.97571 0.96007 1.69928 1.24998 1.35701 1.22142 0.86300 0.78682 0.80304 0.81441 1.19517 1.20648 1.20497 0.75987 0.87636 0.87603 0.86396 0.86262 0.74578 0.82088 0.91334 0.91084 0.91478 0.92498 0.93838 0.92200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.41 19.25 29.55 0.57 -0.84 16 2 C -0.18 -1.74 13.35 -37.12 -0.50 -2.23 16 3 C 0.00 -0.01 6.42 34.37 0.22 0.21 16 4 S -0.15 -1.79 20.83 -107.50 -2.24 -4.03 16 5 C -0.13 -1.36 6.42 36.01 0.23 -1.13 16 6 C 0.54 8.18 7.81 -10.98 -0.09 8.10 16 7 O -0.49 -9.07 12.99 5.55 0.07 -8.99 16 8 N -0.63 -10.67 5.41 -11.46 -0.06 -10.73 16 9 C 0.30 6.27 7.66 -153.16 -1.17 5.09 16 10 C -0.29 -6.02 9.58 -39.78 -0.38 -6.40 16 11 C 0.05 1.03 7.21 -82.44 -0.59 0.44 16 12 C -0.06 -0.94 10.44 36.00 0.38 -0.56 16 13 N -0.28 -6.60 12.56 33.65 0.42 -6.18 16 14 N -0.34 -7.99 3.60 -61.58 -0.22 -8.21 16 15 C 0.26 6.29 6.01 -5.20 -0.03 6.26 16 16 C -0.54 -14.30 9.39 -34.44 -0.32 -14.62 16 17 H 0.07 1.83 7.81 -52.49 -0.41 1.42 16 18 C 0.07 1.74 5.46 -17.82 -0.10 1.64 16 19 N -0.89 -23.94 13.29 55.43 0.74 -23.20 16 20 Si 0.91 20.38 29.54 -169.99 -5.02 15.36 16 21 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 22 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 23 H -0.28 -6.29 7.11 56.52 0.40 -5.88 16 24 H 0.22 0.99 7.80 -54.10 -0.42 0.57 16 25 H 0.11 0.69 8.14 -51.92 -0.42 0.27 16 26 H 0.11 0.71 8.14 -51.92 -0.42 0.29 16 27 H 0.12 0.91 8.14 -51.93 -0.42 0.49 16 28 H 0.12 0.99 8.14 -51.92 -0.42 0.57 16 29 H 0.42 6.28 7.96 -40.82 -0.32 5.95 16 30 H 0.16 3.24 5.83 -52.49 -0.31 2.93 16 31 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 32 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 33 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 34 H 0.06 1.51 8.14 -51.93 -0.42 1.09 16 35 H 0.04 1.02 7.49 -51.93 -0.39 0.63 16 36 H 0.27 6.80 8.31 -40.82 -0.34 6.46 16 LS Contribution 338.89 15.07 5.11 5.11 Total: -1.00 -32.74 338.89 -7.36 -40.09 By element: Atomic # 1 Polarization: 9.20 SS G_CDS: -4.37 Total: 4.83 kcal Atomic # 6 Polarization: -2.26 SS G_CDS: -1.78 Total: -4.04 kcal Atomic # 7 Polarization: -49.20 SS G_CDS: 0.88 Total: -48.32 kcal Atomic # 8 Polarization: -9.07 SS G_CDS: 0.07 Total: -8.99 kcal Atomic # 14 Polarization: 20.38 SS G_CDS: -5.02 Total: 15.36 kcal Atomic # 16 Polarization: -1.79 SS G_CDS: -2.24 Total: -4.03 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -32.74 -7.36 -40.09 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000888555731.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.129 kcal (2) G-P(sol) polarization free energy of solvation -32.736 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 104.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.095 kcal (6) G-S(sol) free energy of system = (1) + (5) 97.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds