Wall clock time and date at job start Tue Mar 31 2020 06:55:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17395 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 S 1.81398 * 109.47216 * 29.75799 * 3 2 1 5 5 C 1.81401 * 102.99825 * 179.97438 * 4 3 2 6 6 C 1.50706 * 109.47089 * 180.02562 * 5 4 3 7 7 O 1.21293 * 120.00109 * 359.97438 * 6 5 4 8 8 N 1.34779 * 119.99978 * 180.02562 * 6 5 4 9 9 C 1.39471 * 119.99891 * 179.97438 * 8 6 5 10 10 C 1.36110 * 126.21626 * 0.14378 * 9 8 6 11 11 C 1.39762 * 107.82869 * 180.26709 * 10 9 8 12 12 C 1.50694 * 125.84077 * 179.72419 * 11 10 9 13 13 N 1.30855 * 108.31847 * 359.75600 * 11 10 9 14 14 N 1.35266 * 126.21450 * 180.02562 * 9 8 6 15 15 C 1.46491 * 126.04623 * 359.97438 * 14 9 8 16 16 C 1.50702 * 109.46957 * 269.71277 * 15 14 9 17 17 H 1.08002 * 120.00299 * 0.02562 * 16 15 14 18 18 C 1.37884 * 119.99942 * 179.72213 * 16 15 14 19 19 N 1.31514 * 119.99698 * 0.28408 * 18 16 15 20 20 Si 1.86794 * 119.99837 * 180.27476 * 18 16 15 21 21 H 1.48496 * 109.47341 * 0.02562 * 20 18 16 22 22 H 1.48508 * 109.46983 * 120.00379 * 20 18 16 23 23 H 1.48503 * 109.47491 * 240.00192 * 20 18 16 24 24 H 4.62818 * 6.06435 * 179.97438 * 4 1 2 25 25 H 1.09000 * 109.47327 * 269.75501 * 3 2 1 26 26 H 1.08999 * 109.46851 * 149.75695 * 3 2 1 27 27 H 1.08994 * 109.47451 * 59.99940 * 5 4 3 28 28 H 1.09002 * 109.47152 * 299.99572 * 5 4 3 29 29 H 0.97004 * 120.00013 * 359.97438 * 8 6 5 30 30 H 1.07999 * 126.09101 * 0.05355 * 10 9 8 31 31 H 1.09003 * 109.47188 * 270.01578 * 12 11 10 32 32 H 1.08998 * 109.47119 * 30.01737 * 12 11 10 33 33 H 1.09003 * 109.47108 * 150.01312 * 12 11 10 34 34 H 1.09004 * 109.47166 * 149.71543 * 15 14 9 35 35 H 1.08994 * 109.47507 * 29.71250 * 15 14 9 36 36 H 0.97005 * 119.99651 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 16 3.2513 -1.4838 -0.8488 5 6 5.0537 -1.3050 -0.7480 6 6 5.7135 -2.4808 -1.4213 7 8 5.0347 -3.3538 -1.9196 8 7 7.0580 -2.5629 -1.4687 9 6 7.6687 -3.6513 -2.0913 10 6 7.0335 -4.6951 -2.6910 11 6 8.0105 -5.5661 -3.1810 12 6 7.7539 -6.8581 -3.9129 13 7 9.1863 -5.0681 -2.8949 14 7 8.9997 -3.8603 -2.2107 15 6 10.0587 -2.9815 -1.7085 16 6 10.4268 -1.9796 -2.7724 17 1 9.9220 -1.9957 -3.7271 18 6 11.4036 -1.0385 -2.5249 19 7 12.0180 -1.0188 -1.3622 20 14 11.8544 0.2081 -3.8409 21 1 11.0232 -0.0251 -5.0492 22 1 11.6080 1.5800 -3.3284 23 1 13.2900 0.0610 -4.1913 24 1 -1.0498 -0.0005 0.0000 25 1 3.0093 0.0052 1.0276 26 1 3.0088 0.8886 -0.5176 27 1 5.3572 -1.2676 0.2981 28 1 5.3560 -0.3844 -1.2472 29 1 7.6009 -1.8649 -1.0698 30 1 5.9648 -4.8285 -2.7708 31 1 7.6890 -7.6758 -3.1950 32 1 6.8165 -6.7834 -4.4642 33 1 8.5704 -7.0497 -4.6091 34 1 10.9346 -3.5776 -1.4522 35 1 9.7048 -2.4560 -0.8216 36 1 12.7055 -0.3569 -1.1882 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000888555731.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:55:34 Heat of formation + Delta-G solvation = 77.097537 kcal Electronic energy + Delta-G solvation = -20003.946544 eV Core-core repulsion = 16810.201738 eV Total energy + Delta-G solvation = -3193.744806 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 293.094 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.44634 -40.56931 -36.31515 -35.62576 -34.92673 -33.85936 -31.91403 -30.64085 -29.61916 -29.08064 -27.82091 -24.80664 -23.21172 -21.33191 -20.91003 -19.42654 -18.89574 -18.39446 -17.91185 -17.25346 -17.02614 -16.60948 -16.08768 -15.84469 -15.41868 -15.27171 -15.19856 -14.55035 -14.44524 -14.27299 -14.04775 -13.94422 -13.51992 -13.39261 -13.12312 -12.89989 -12.71862 -12.32664 -11.95428 -11.69217 -11.67641 -11.52229 -11.30266 -11.03172 -10.77996 -10.76841 -9.65474 -9.10747 -8.74955 -8.37412 -6.54628 0.06964 0.73749 1.27181 1.34739 1.37848 1.41889 1.51255 1.58450 1.84083 2.02036 2.15854 2.26890 2.35217 2.93197 3.32110 3.42515 3.81895 4.01495 4.19367 4.24506 4.28131 4.41859 4.60440 4.70150 4.82577 4.85683 4.89009 4.94705 5.04349 5.20084 5.22260 5.50627 5.76092 5.94038 6.10901 6.23180 6.55903 6.60676 6.87204 7.00797 7.17617 8.69207 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.012513 B = 0.004064 C = 0.003225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2237.066331 B = 6888.934197 C = 8679.946590 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.223 4.223 3 C 0.016 3.984 4 S -0.221 6.221 5 C -0.111 4.111 6 C 0.535 3.465 7 O -0.526 6.526 8 N -0.633 5.633 9 C 0.301 3.699 10 C -0.307 4.307 11 C 0.058 3.942 12 C -0.061 4.061 13 N -0.330 5.330 14 N -0.366 5.366 15 C 0.271 3.729 16 C -0.555 4.555 17 H 0.046 0.954 18 C 0.029 3.971 19 N -0.913 5.913 20 Si 0.969 3.031 21 H -0.277 1.277 22 H -0.263 1.263 23 H -0.277 1.277 24 H 0.253 0.747 25 H 0.126 0.874 26 H 0.124 0.876 27 H 0.151 0.849 28 H 0.147 0.853 29 H 0.425 0.575 30 H 0.166 0.834 31 H 0.090 0.910 32 H 0.092 0.908 33 H 0.073 0.927 34 H 0.027 0.973 35 H 0.052 0.948 36 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.411 3.619 4.309 18.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.224 4.224 3 C -0.131 4.131 4 S 0.008 5.992 5 C -0.261 4.261 6 C 0.322 3.678 7 O -0.400 6.400 8 N -0.282 5.282 9 C 0.078 3.922 10 C -0.339 4.339 11 C -0.107 4.107 12 C -0.119 4.119 13 N -0.155 5.155 14 N -0.151 5.151 15 C 0.153 3.847 16 C -0.593 4.593 17 H 0.065 0.935 18 C -0.173 4.173 19 N -0.551 5.551 20 Si 0.793 3.207 21 H -0.202 1.202 22 H -0.188 1.188 23 H -0.202 1.202 24 H 0.269 0.731 25 H 0.144 0.856 26 H 0.142 0.858 27 H 0.169 0.831 28 H 0.165 0.835 29 H 0.263 0.737 30 H 0.183 0.817 31 H 0.108 0.892 32 H 0.111 0.889 33 H 0.092 0.908 34 H 0.045 0.955 35 H 0.069 0.931 36 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -16.931 2.245 3.599 17.454 hybrid contribution 0.827 2.034 0.316 2.218 sum -16.104 4.279 3.915 17.117 Atomic orbital electron populations 1.25777 0.96765 0.97216 0.98348 1.22280 0.94014 1.03279 1.02860 1.20331 0.88634 0.98910 1.05187 1.88089 1.01855 1.32373 1.76913 1.23417 0.95391 0.99858 1.07450 1.20345 0.80327 0.87750 0.79422 1.90674 1.62996 1.40799 1.45539 1.42768 1.07312 1.22286 1.55798 1.18245 0.84399 0.91129 0.98449 1.21472 1.01177 0.97208 1.14069 1.22879 0.89789 0.98991 0.99032 1.20225 1.03221 0.89414 0.99085 1.77314 1.23313 0.96827 1.18055 1.49176 1.03790 1.17739 1.44412 1.19254 0.84156 0.86743 0.94582 1.21426 1.22441 1.15186 1.00273 0.93549 1.25660 0.94736 0.98995 0.97910 1.69993 1.25245 1.36401 1.23457 0.85347 0.78065 0.78694 0.78597 1.20210 1.18794 1.20245 0.73112 0.85631 0.85828 0.83102 0.83549 0.73662 0.81666 0.89188 0.88921 0.90834 0.95506 0.93055 0.91609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.32 19.25 74.32 1.43 -0.89 16 2 C -0.22 -3.96 13.35 31.13 0.42 -3.54 16 3 C 0.02 0.23 6.42 70.18 0.45 0.68 16 4 S -0.22 -4.95 20.83 -56.49 -1.18 -6.12 16 5 C -0.11 -2.07 6.42 71.24 0.46 -1.61 16 6 C 0.53 15.85 7.81 87.66 0.68 16.54 16 7 O -0.53 -19.23 12.99 -3.07 -0.04 -19.27 16 8 N -0.63 -21.03 5.41 -308.55 -1.67 -22.70 16 9 C 0.30 12.68 7.66 131.32 1.01 13.69 16 10 C -0.31 -12.69 9.58 22.14 0.21 -12.48 16 11 C 0.06 2.35 7.21 43.07 0.31 2.66 16 12 C -0.06 -1.74 10.44 71.23 0.74 -1.00 16 13 N -0.33 -15.71 12.56 -47.45 -0.60 -16.30 16 14 N -0.37 -17.44 3.60 -348.73 -1.26 -18.70 16 15 C 0.27 13.74 6.01 85.64 0.51 14.25 16 16 C -0.56 -29.90 9.39 25.60 0.24 -29.66 16 17 H 0.05 2.63 7.81 -2.91 -0.02 2.61 16 18 C 0.03 1.50 5.46 84.66 0.46 1.96 16 19 N -0.91 -48.97 13.29 21.45 0.28 -48.69 16 20 Si 0.97 41.39 29.54 68.60 2.03 43.41 16 21 H -0.28 -12.05 7.11 99.48 0.71 -11.34 16 22 H -0.26 -10.47 7.11 99.48 0.71 -9.77 16 23 H -0.28 -11.69 7.11 99.48 0.71 -10.98 16 24 H 0.25 1.57 7.80 -4.43 -0.03 1.54 16 25 H 0.13 1.29 8.14 -2.39 -0.02 1.27 16 26 H 0.12 1.33 8.14 -2.39 -0.02 1.31 16 27 H 0.15 1.85 8.14 -2.39 -0.02 1.83 16 28 H 0.15 1.99 8.14 -2.39 -0.02 1.97 16 29 H 0.43 12.51 7.96 -92.70 -0.74 11.77 16 30 H 0.17 6.67 5.83 -2.91 -0.02 6.65 16 31 H 0.09 2.21 8.14 -2.39 -0.02 2.19 16 32 H 0.09 2.24 8.14 -2.39 -0.02 2.22 16 33 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 34 H 0.03 1.49 8.14 -2.38 -0.02 1.47 16 35 H 0.05 2.47 7.49 -2.39 -0.02 2.45 16 36 H 0.27 13.72 8.31 -92.70 -0.77 12.95 16 Total: -1.00 -72.49 338.89 4.87 -67.63 By element: Atomic # 1 Polarization: 19.77 SS G_CDS: 0.37 Total: 20.14 kcal Atomic # 6 Polarization: -6.33 SS G_CDS: 6.93 Total: 0.60 kcal Atomic # 7 Polarization: -103.15 SS G_CDS: -3.24 Total: -106.39 kcal Atomic # 8 Polarization: -19.23 SS G_CDS: -0.04 Total: -19.27 kcal Atomic # 14 Polarization: 41.39 SS G_CDS: 2.03 Total: 43.41 kcal Atomic # 16 Polarization: -4.95 SS G_CDS: -1.18 Total: -6.12 kcal Total: -72.49 4.87 -67.63 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000888555731.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.726 kcal (2) G-P(sol) polarization free energy of solvation -72.494 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.865 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.628 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.098 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds