Wall clock time and date at job start Tue Mar 31 2020 06:55:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17394 * 1 3 3 C 1.47206 * 179.97438 * 2 1 4 4 S 1.81394 * 109.47294 * 339.19329 * 3 2 1 5 5 C 1.81407 * 102.99789 * 180.02562 * 4 3 2 6 6 C 1.50704 * 109.46653 * 179.97438 * 5 4 3 7 7 O 1.21291 * 120.00259 * 0.02562 * 6 5 4 8 8 N 1.34779 * 119.99258 * 179.97438 * 6 5 4 9 9 C 1.40162 * 119.99437 * 180.02562 * 8 6 5 10 10 C 1.40415 * 125.97631 * 0.31570 * 9 8 6 11 11 C 1.35232 * 107.86655 * 180.13084 * 10 9 8 12 12 C 1.50703 * 126.06766 * 179.84998 * 11 10 9 13 13 N 1.34968 * 107.86163 * 359.58679 * 11 10 9 14 14 C 1.46509 * 125.97450 * 180.23081 * 13 11 10 15 15 C 1.50698 * 109.47025 * 89.99735 * 14 13 11 16 16 H 1.08000 * 120.00464 * 0.02562 * 15 14 13 17 17 C 1.37880 * 119.99358 * 179.97438 * 15 14 13 18 18 N 1.31506 * 120.00418 * 0.02562 * 17 15 14 19 19 Si 1.86807 * 119.99496 * 180.02562 * 17 15 14 20 20 H 1.48495 * 109.47105 * 90.00179 * 19 17 15 21 21 H 1.48499 * 109.46684 * 210.00001 * 19 17 15 22 22 H 1.48503 * 109.47226 * 329.99788 * 19 17 15 23 23 N 1.31221 * 125.97269 * 179.97438 * 9 8 6 24 24 H 4.62825 * 6.06326 * 179.97438 * 4 1 2 25 25 H 1.09010 * 109.46746 * 219.18969 * 3 2 1 26 26 H 1.08998 * 109.46864 * 99.19567 * 3 2 1 27 27 H 1.08995 * 109.46783 * 60.00031 * 5 4 3 28 28 H 1.08990 * 109.46930 * 299.99847 * 5 4 3 29 29 H 0.96991 * 120.00480 * 0.02562 * 8 6 5 30 30 H 1.07995 * 126.06342 * 0.02562 * 10 9 8 31 31 H 1.09002 * 109.47152 * 269.68932 * 12 11 10 32 32 H 1.09001 * 109.46980 * 149.69032 * 12 11 10 33 33 H 1.09004 * 109.47113 * 29.69013 * 12 11 10 34 34 H 1.08994 * 109.46750 * 210.00045 * 14 13 11 35 35 H 1.09004 * 109.46474 * 329.99737 * 14 13 11 36 36 H 0.96998 * 120.00265 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 16 3.2514 -1.5977 0.6075 5 6 5.0538 -1.4054 0.5356 6 6 5.7137 -2.6717 1.0176 7 8 5.0348 -3.6115 1.3741 8 7 7.0581 -2.7600 1.0516 9 6 7.6718 -3.9379 1.4994 10 6 7.0114 -5.0985 1.9336 11 6 7.9521 -6.0047 2.2839 12 6 7.6941 -7.3928 2.8107 13 7 9.1630 -5.4473 2.0723 14 6 10.4588 -6.0861 2.3155 15 6 10.9035 -6.8100 1.0708 16 1 10.2832 -6.7954 0.1869 17 6 12.1028 -7.4901 1.0603 18 7 12.8584 -7.5075 2.1365 19 14 12.6543 -8.3869 -0.4828 20 1 13.4533 -7.4666 -1.3313 21 1 13.4852 -9.5581 -0.1043 22 1 11.4630 -8.8490 -1.2394 23 7 8.9641 -4.1510 1.5802 24 1 -1.0498 -0.0003 0.0004 25 1 3.0089 0.7974 0.6494 26 1 3.0092 0.1650 -1.0145 27 1 5.3561 -0.5737 1.1718 28 1 5.3571 -1.2057 -0.4921 29 1 7.6009 -2.0086 0.7661 30 1 5.9420 -5.2413 1.9811 31 1 7.6319 -7.3629 3.8986 32 1 8.5088 -8.0522 2.5114 33 1 6.7551 -7.7674 2.4033 34 1 11.1952 -5.3261 2.5765 35 1 10.3647 -6.7977 3.1358 36 1 13.7019 -7.9863 2.1292 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000889827489.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:55:38 Heat of formation + Delta-G solvation = 98.519419 kcal Electronic energy + Delta-G solvation = -19621.038801 eV Core-core repulsion = 16428.222918 eV Total energy + Delta-G solvation = -3192.815883 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 293.094 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.78179 -39.31986 -34.93952 -34.37308 -33.43481 -31.70177 -31.04562 -30.07362 -28.82928 -26.59623 -26.35185 -23.18304 -21.70385 -19.88215 -19.46840 -18.71312 -16.90117 -16.69137 -16.68537 -16.00741 -15.91733 -15.33097 -14.79181 -14.77739 -14.38131 -14.17810 -14.03907 -13.54760 -13.08283 -12.96532 -12.49635 -12.34820 -12.12701 -11.70441 -11.43416 -11.10822 -11.00726 -10.85918 -10.73833 -10.49608 -10.27370 -10.11114 -10.02502 -9.69572 -9.56613 -8.66556 -8.01182 -7.94426 -7.50488 -6.27668 -4.35475 0.79912 2.02211 2.19181 2.41250 2.68459 2.83807 2.87347 3.20364 3.26674 3.31463 3.64651 3.77454 3.86684 4.28188 4.49373 4.64595 4.73859 4.83988 4.87987 5.05991 5.40819 5.50908 5.67864 5.91340 6.08866 6.18485 6.44969 6.49855 6.66779 6.90713 7.02452 7.16592 7.37096 7.56551 7.65013 7.86384 8.01536 8.11400 8.60340 8.72518 9.31045 10.79590 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.035698 B = 0.002587 C = 0.002540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 784.177771 B =10820.446863 C =11021.762007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.181 4.181 3 C -0.001 4.001 4 S -0.151 6.151 5 C -0.130 4.130 6 C 0.535 3.465 7 O -0.494 6.494 8 N -0.626 5.626 9 C 0.262 3.738 10 C -0.289 4.289 11 C 0.093 3.907 12 C -0.089 4.089 13 N -0.316 5.316 14 C 0.258 3.742 15 C -0.537 4.537 16 H 0.064 0.936 17 C 0.066 3.934 18 N -0.891 5.891 19 Si 0.906 3.094 20 H -0.278 1.278 21 H -0.283 1.283 22 H -0.272 1.272 23 N -0.319 5.319 24 H 0.224 0.776 25 H 0.105 0.895 26 H 0.105 0.895 27 H 0.116 0.884 28 H 0.117 0.883 29 H 0.411 0.589 30 H 0.160 0.840 31 H 0.071 0.929 32 H 0.083 0.917 33 H 0.076 0.924 34 H 0.052 0.948 35 H 0.055 0.945 36 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.529 13.706 -2.530 22.395 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.182 4.182 3 C -0.148 4.148 4 S 0.077 5.923 5 C -0.282 4.282 6 C 0.319 3.681 7 O -0.366 6.366 8 N -0.274 5.274 9 C 0.010 3.990 10 C -0.320 4.320 11 C -0.039 4.039 12 C -0.147 4.147 13 N -0.098 5.098 14 C 0.140 3.860 15 C -0.575 4.575 16 H 0.083 0.917 17 C -0.138 4.138 18 N -0.529 5.529 19 Si 0.733 3.267 20 H -0.203 1.203 21 H -0.209 1.209 22 H -0.196 1.196 23 N -0.150 5.150 24 H 0.240 0.760 25 H 0.123 0.877 26 H 0.123 0.877 27 H 0.134 0.866 28 H 0.135 0.865 29 H 0.247 0.753 30 H 0.177 0.823 31 H 0.090 0.910 32 H 0.101 0.899 33 H 0.094 0.906 34 H 0.070 0.930 35 H 0.073 0.927 36 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -17.089 12.509 -2.019 21.274 hybrid contribution 0.696 0.824 -1.319 1.704 sum -16.394 13.333 -3.338 21.393 Atomic orbital electron populations 1.24906 0.95785 0.98523 0.99773 1.21687 0.92954 1.02036 1.01566 1.20291 0.89253 0.99921 1.05329 1.87971 0.99987 1.17858 1.86471 1.23479 0.97415 1.00512 1.06772 1.19497 0.81436 0.88442 0.78768 1.90714 1.62586 1.37978 1.45368 1.42272 1.05979 1.14826 1.64367 1.18932 0.91154 0.87701 1.01248 1.21252 1.00744 0.92878 1.17146 1.21075 0.85744 0.96724 1.00320 1.20388 1.03229 0.90592 1.00536 1.49013 1.07255 1.07873 1.45657 1.19708 0.75501 0.92745 0.97996 1.21319 1.05475 1.32553 0.98182 0.91735 1.24932 0.95824 0.96083 0.96954 1.69914 1.12805 1.42232 1.27948 0.86352 0.78780 0.79094 0.82448 1.20340 1.20857 1.19636 1.77247 1.13341 0.99549 1.24823 0.75969 0.87701 0.87693 0.86553 0.86527 0.75333 0.82296 0.91023 0.89863 0.90552 0.92979 0.92723 0.92228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.27 19.25 29.55 0.57 -0.70 16 2 C -0.18 -1.60 13.35 -37.12 -0.50 -2.09 16 3 C 0.00 -0.01 6.42 34.37 0.22 0.21 16 4 S -0.15 -1.62 20.83 -107.50 -2.24 -3.86 16 5 C -0.13 -1.12 6.42 36.01 0.23 -0.89 16 6 C 0.54 7.36 7.82 -10.98 -0.09 7.27 16 7 O -0.49 -8.71 13.00 5.55 0.07 -8.64 16 8 N -0.63 -9.18 5.45 -11.13 -0.06 -9.24 16 9 C 0.26 5.23 8.11 -154.38 -1.25 3.98 16 10 C -0.29 -5.93 9.52 -39.83 -0.38 -6.31 16 11 C 0.09 1.95 6.92 -82.28 -0.57 1.38 16 12 C -0.09 -1.53 9.89 36.01 0.36 -1.17 16 13 N -0.32 -7.44 3.59 -58.32 -0.21 -7.65 16 14 C 0.26 6.57 5.81 -5.19 -0.03 6.54 16 15 C -0.54 -14.69 9.39 -34.44 -0.32 -15.01 16 16 H 0.06 1.83 7.81 -52.49 -0.41 1.42 16 17 C 0.07 1.78 5.46 -17.82 -0.10 1.68 16 18 N -0.89 -24.88 13.29 55.43 0.74 -24.14 16 19 Si 0.91 21.00 29.54 -169.99 -5.02 15.97 16 20 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 21 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 22 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 23 N -0.32 -7.26 12.59 31.44 0.40 -6.86 16 24 H 0.22 0.85 7.80 -54.10 -0.42 0.43 16 25 H 0.10 0.55 8.14 -51.92 -0.42 0.13 16 26 H 0.10 0.56 8.14 -51.92 -0.42 0.14 16 27 H 0.12 0.67 8.14 -51.93 -0.42 0.25 16 28 H 0.12 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.41 4.58 8.82 -40.82 -0.36 4.22 16 30 H 0.16 3.20 5.92 -52.49 -0.31 2.89 16 31 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 32 H 0.08 1.52 7.71 -51.93 -0.40 1.12 16 33 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 34 H 0.05 1.41 8.14 -51.93 -0.42 0.99 16 35 H 0.06 1.38 7.65 -51.93 -0.40 0.98 16 36 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 LS Contribution 338.98 15.07 5.11 5.11 Total: -1.00 -33.90 338.98 -7.47 -41.36 By element: Atomic # 1 Polarization: 7.44 SS G_CDS: -4.39 Total: 3.04 kcal Atomic # 6 Polarization: -3.25 SS G_CDS: -1.86 Total: -5.10 kcal Atomic # 7 Polarization: -48.75 SS G_CDS: 0.86 Total: -47.89 kcal Atomic # 8 Polarization: -8.71 SS G_CDS: 0.07 Total: -8.64 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.97 kcal Atomic # 16 Polarization: -1.62 SS G_CDS: -2.24 Total: -3.86 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -33.90 -7.47 -41.36 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000889827489.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.883 kcal (2) G-P(sol) polarization free energy of solvation -33.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 105.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.364 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds