Wall clock time and date at job start Tue Mar 31 2020 06:55:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17394 * 1 3 3 C 1.47206 * 179.97438 * 2 1 4 4 S 1.81394 * 109.47294 * 339.19329 * 3 2 1 5 5 C 1.81407 * 102.99789 * 180.02562 * 4 3 2 6 6 C 1.50704 * 109.46653 * 179.97438 * 5 4 3 7 7 O 1.21291 * 120.00259 * 0.02562 * 6 5 4 8 8 N 1.34779 * 119.99258 * 179.97438 * 6 5 4 9 9 C 1.40162 * 119.99437 * 180.02562 * 8 6 5 10 10 C 1.40415 * 125.97631 * 0.31570 * 9 8 6 11 11 C 1.35232 * 107.86655 * 180.13084 * 10 9 8 12 12 C 1.50703 * 126.06766 * 179.84998 * 11 10 9 13 13 N 1.34968 * 107.86163 * 359.58679 * 11 10 9 14 14 C 1.46509 * 125.97450 * 180.23081 * 13 11 10 15 15 C 1.50698 * 109.47025 * 89.99735 * 14 13 11 16 16 H 1.08000 * 120.00464 * 0.02562 * 15 14 13 17 17 C 1.37880 * 119.99358 * 179.97438 * 15 14 13 18 18 N 1.31506 * 120.00418 * 0.02562 * 17 15 14 19 19 Si 1.86807 * 119.99496 * 180.02562 * 17 15 14 20 20 H 1.48495 * 109.47105 * 90.00179 * 19 17 15 21 21 H 1.48499 * 109.46684 * 210.00001 * 19 17 15 22 22 H 1.48503 * 109.47226 * 329.99788 * 19 17 15 23 23 N 1.31221 * 125.97269 * 179.97438 * 9 8 6 24 24 H 4.62825 * 6.06326 * 179.97438 * 4 1 2 25 25 H 1.09010 * 109.46746 * 219.18969 * 3 2 1 26 26 H 1.08998 * 109.46864 * 99.19567 * 3 2 1 27 27 H 1.08995 * 109.46783 * 60.00031 * 5 4 3 28 28 H 1.08990 * 109.46930 * 299.99847 * 5 4 3 29 29 H 0.96991 * 120.00480 * 0.02562 * 8 6 5 30 30 H 1.07995 * 126.06342 * 0.02562 * 10 9 8 31 31 H 1.09002 * 109.47152 * 269.68932 * 12 11 10 32 32 H 1.09001 * 109.46980 * 149.69032 * 12 11 10 33 33 H 1.09004 * 109.47113 * 29.69013 * 12 11 10 34 34 H 1.08994 * 109.46750 * 210.00045 * 14 13 11 35 35 H 1.09004 * 109.46474 * 329.99737 * 14 13 11 36 36 H 0.96998 * 120.00265 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 16 3.2514 -1.5977 0.6075 5 6 5.0538 -1.4054 0.5356 6 6 5.7137 -2.6717 1.0176 7 8 5.0348 -3.6115 1.3741 8 7 7.0581 -2.7600 1.0516 9 6 7.6718 -3.9379 1.4994 10 6 7.0114 -5.0985 1.9336 11 6 7.9521 -6.0047 2.2839 12 6 7.6941 -7.3928 2.8107 13 7 9.1630 -5.4473 2.0723 14 6 10.4588 -6.0861 2.3155 15 6 10.9035 -6.8100 1.0708 16 1 10.2832 -6.7954 0.1869 17 6 12.1028 -7.4901 1.0603 18 7 12.8584 -7.5075 2.1365 19 14 12.6543 -8.3869 -0.4828 20 1 13.4533 -7.4666 -1.3313 21 1 13.4852 -9.5581 -0.1043 22 1 11.4630 -8.8490 -1.2394 23 7 8.9641 -4.1510 1.5802 24 1 -1.0498 -0.0003 0.0004 25 1 3.0089 0.7974 0.6494 26 1 3.0092 0.1650 -1.0145 27 1 5.3561 -0.5737 1.1718 28 1 5.3571 -1.2057 -0.4921 29 1 7.6009 -2.0086 0.7661 30 1 5.9420 -5.2413 1.9811 31 1 7.6319 -7.3629 3.8986 32 1 8.5088 -8.0522 2.5114 33 1 6.7551 -7.7674 2.4033 34 1 11.1952 -5.3261 2.5765 35 1 10.3647 -6.7977 3.1358 36 1 13.7019 -7.9863 2.1292 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000889827489.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:55:38 Heat of formation + Delta-G solvation = 77.227420 kcal Electronic energy + Delta-G solvation = -19621.962092 eV Core-core repulsion = 16428.222918 eV Total energy + Delta-G solvation = -3193.739174 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 293.094 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.32623 -40.61308 -36.38604 -35.33347 -34.91506 -33.23418 -32.69141 -31.13886 -29.41730 -28.42483 -27.89483 -25.04637 -23.05491 -21.32278 -20.90039 -19.41903 -18.80775 -17.99769 -17.80946 -17.30802 -16.93661 -16.85860 -16.21330 -15.85868 -15.39070 -15.26955 -15.10070 -14.75545 -14.38715 -14.16377 -13.94242 -13.82389 -13.58931 -13.49736 -13.14822 -12.84368 -12.69833 -12.26252 -12.11406 -11.65407 -11.58262 -11.37490 -11.29393 -11.02862 -10.74790 -10.74282 -9.61355 -9.17851 -8.73133 -8.33549 -6.51160 0.10067 0.86279 1.28689 1.35118 1.37842 1.39602 1.45482 1.51349 1.84666 2.15642 2.21160 2.29990 2.39573 2.96243 3.36471 3.48189 3.88220 4.07475 4.13929 4.26107 4.30239 4.42869 4.45228 4.74119 4.75836 4.86101 4.96803 4.98952 5.05106 5.11918 5.23906 5.52891 5.80117 5.90546 6.21266 6.23868 6.60931 6.61362 6.91654 7.07325 7.19822 8.72463 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.035698 B = 0.002587 C = 0.002540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 784.177771 B =10820.446863 C =11021.762007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.222 4.222 3 C 0.018 3.982 4 S -0.232 6.232 5 C -0.106 4.106 6 C 0.533 3.467 7 O -0.534 6.534 8 N -0.617 5.617 9 C 0.273 3.727 10 C -0.300 4.300 11 C 0.087 3.913 12 C -0.086 4.086 13 N -0.342 5.342 14 C 0.275 3.725 15 C -0.553 4.553 16 H 0.049 0.951 17 C 0.023 3.977 18 N -0.917 5.917 19 Si 0.971 3.029 20 H -0.274 1.274 21 H -0.271 1.271 22 H -0.270 1.270 23 N -0.355 5.355 24 H 0.251 0.749 25 H 0.127 0.873 26 H 0.126 0.874 27 H 0.153 0.847 28 H 0.152 0.848 29 H 0.429 0.571 30 H 0.164 0.836 31 H 0.093 0.907 32 H 0.067 0.933 33 H 0.101 0.899 34 H 0.026 0.974 35 H 0.052 0.948 36 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.556 14.867 -3.690 24.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.223 4.223 3 C -0.128 4.128 4 S -0.004 6.004 5 C -0.256 4.256 6 C 0.319 3.681 7 O -0.409 6.409 8 N -0.268 5.268 9 C 0.019 3.981 10 C -0.331 4.331 11 C -0.043 4.043 12 C -0.144 4.144 13 N -0.124 5.124 14 C 0.156 3.844 15 C -0.591 4.591 16 H 0.067 0.933 17 C -0.178 4.178 18 N -0.555 5.555 19 Si 0.795 3.205 20 H -0.199 1.199 21 H -0.195 1.195 22 H -0.195 1.195 23 N -0.185 5.185 24 H 0.267 0.733 25 H 0.145 0.855 26 H 0.144 0.856 27 H 0.171 0.829 28 H 0.169 0.831 29 H 0.268 0.732 30 H 0.182 0.818 31 H 0.111 0.889 32 H 0.086 0.914 33 H 0.119 0.881 34 H 0.044 0.956 35 H 0.070 0.930 36 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -18.126 13.706 -3.183 22.946 hybrid contribution 0.842 0.559 -0.943 1.383 sum -17.283 14.265 -4.126 22.787 Atomic orbital electron populations 1.25770 0.96822 0.97113 0.98773 1.22337 0.94126 1.03235 1.02621 1.20333 0.88407 0.97397 1.06691 1.88260 1.02720 1.22057 1.87338 1.23404 0.94764 0.98143 1.09317 1.20450 0.80611 0.89688 0.77332 1.90695 1.63294 1.39978 1.46902 1.42409 1.06643 1.13712 1.64042 1.19281 0.90394 0.89197 0.99237 1.21422 1.00798 0.93270 1.17584 1.21740 0.84946 0.98208 0.99411 1.20503 1.03776 0.88212 1.01932 1.48799 1.07158 1.08716 1.47772 1.19259 0.76148 0.91692 0.97276 1.21427 1.05926 1.33463 0.98304 0.93262 1.25732 0.95612 0.96539 0.99965 1.69994 1.13200 1.42689 1.29646 0.85359 0.78337 0.78164 0.78654 1.19915 1.19542 1.19487 1.77167 1.14944 0.99663 1.26740 0.73311 0.85533 0.85630 0.82884 0.83058 0.73242 0.81834 0.88865 0.91355 0.88067 0.95615 0.93043 0.91713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.17 19.25 74.32 1.43 -0.74 16 2 C -0.22 -3.54 13.35 31.13 0.42 -3.12 16 3 C 0.02 0.21 6.42 70.18 0.45 0.66 16 4 S -0.23 -4.63 20.83 -56.49 -1.18 -5.81 16 5 C -0.11 -1.49 6.42 71.24 0.46 -1.04 16 6 C 0.53 13.78 7.82 87.66 0.69 14.46 16 7 O -0.53 -18.57 13.00 -3.06 -0.04 -18.61 16 8 N -0.62 -17.22 5.45 -307.50 -1.68 -18.89 16 9 C 0.27 10.87 8.11 133.32 1.08 11.95 16 10 C -0.30 -12.33 9.52 22.11 0.21 -12.12 16 11 C 0.09 3.71 6.92 41.38 0.29 4.00 16 12 C -0.09 -2.92 9.89 71.24 0.70 -2.22 16 13 N -0.34 -16.54 3.59 -338.43 -1.22 -17.76 16 14 C 0.28 14.53 5.81 85.63 0.50 15.03 16 15 C -0.55 -30.95 9.39 25.60 0.24 -30.71 16 16 H 0.05 2.85 7.81 -2.91 -0.02 2.83 16 17 C 0.02 1.23 5.46 84.66 0.46 1.70 16 18 N -0.92 -51.63 13.29 21.45 0.28 -51.35 16 19 Si 0.97 42.96 29.54 68.60 2.03 44.99 16 20 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 21 H -0.27 -11.37 7.11 99.48 0.71 -10.66 16 22 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 23 N -0.35 -16.41 12.59 -54.44 -0.69 -17.10 16 24 H 0.25 1.34 7.80 -4.43 -0.03 1.31 16 25 H 0.13 0.92 8.14 -2.39 -0.02 0.90 16 26 H 0.13 0.94 8.14 -2.39 -0.02 0.92 16 27 H 0.15 1.11 8.14 -2.39 -0.02 1.09 16 28 H 0.15 1.16 8.14 -2.40 -0.02 1.14 16 29 H 0.43 8.66 8.82 -92.71 -0.82 7.84 16 30 H 0.16 6.58 5.92 -2.91 -0.02 6.57 16 31 H 0.09 2.74 8.14 -2.39 -0.02 2.72 16 32 H 0.07 2.52 7.71 -2.39 -0.02 2.51 16 33 H 0.10 2.88 8.14 -2.38 -0.02 2.86 16 34 H 0.03 1.47 8.14 -2.39 -0.02 1.45 16 35 H 0.05 2.69 7.65 -2.39 -0.02 2.68 16 36 H 0.27 14.37 8.31 -92.71 -0.77 13.60 16 Total: -1.00 -75.94 338.98 4.72 -71.22 By element: Atomic # 1 Polarization: 15.18 SS G_CDS: 0.28 Total: 15.47 kcal Atomic # 6 Polarization: -9.07 SS G_CDS: 6.92 Total: -2.14 kcal Atomic # 7 Polarization: -101.81 SS G_CDS: -3.29 Total: -105.10 kcal Atomic # 8 Polarization: -18.57 SS G_CDS: -0.04 Total: -18.61 kcal Atomic # 14 Polarization: 42.96 SS G_CDS: 2.03 Total: 44.99 kcal Atomic # 16 Polarization: -4.63 SS G_CDS: -1.18 Total: -5.81 kcal Total: -75.94 4.72 -71.22 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000889827489.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.445 kcal (2) G-P(sol) polarization free energy of solvation -75.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.218 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds