Wall clock time and date at job start Tue Mar 31 2020 06:56:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.29465 * 121.49830 * 2 1 4 4 S 1.69452 * 108.02945 * 180.02562 * 3 2 1 5 5 C 1.72018 * 96.08031 * 359.80146 * 4 3 2 6 6 N 1.38673 * 127.35092 * 180.22006 * 5 4 3 7 7 C 1.46494 * 120.00098 * 85.23788 * 6 5 4 8 8 C 1.34778 * 119.99656 * 265.23881 * 6 5 4 9 9 O 1.21279 * 120.00229 * 359.97438 * 8 6 5 10 10 C 1.50696 * 119.99638 * 180.02562 * 8 6 5 11 11 C 1.52999 * 109.46939 * 179.97438 * 10 8 6 12 12 C 1.53005 * 109.47284 * 179.97438 * 11 10 8 13 13 C 1.50695 * 109.47133 * 180.02562 * 12 11 10 14 14 H 1.08000 * 120.00301 * 359.97438 * 13 12 11 15 15 C 1.37877 * 119.99961 * 179.97438 * 13 12 11 16 16 N 1.31516 * 120.00154 * 0.02562 * 15 13 12 17 17 Si 1.86798 * 120.00184 * 179.97438 * 15 13 12 18 18 H 1.48500 * 109.47013 * 60.00142 * 17 15 13 19 19 H 1.48497 * 109.47396 * 180.02562 * 17 15 13 20 20 H 1.48502 * 109.46987 * 300.00176 * 17 15 13 21 21 C 1.38864 * 105.29309 * 0.32958 * 5 4 3 22 22 C 1.43203 * 123.20235 * 179.88727 * 21 5 4 23 23 N 3.52883 * 83.98767 * 180.02562 * 2 1 3 24 24 H 1.09007 * 109.46827 * 269.97782 * 1 2 3 25 25 H 1.08999 * 109.47204 * 29.97412 * 1 2 3 26 26 H 1.08992 * 109.47518 * 149.97983 * 1 2 3 27 27 H 1.09001 * 109.47526 * 95.19901 * 7 6 5 28 28 H 1.08994 * 109.47163 * 215.20026 * 7 6 5 29 29 H 1.09001 * 109.47082 * 335.19856 * 7 6 5 30 30 H 1.09002 * 109.46884 * 299.99363 * 10 8 6 31 31 H 1.08996 * 109.47270 * 59.99584 * 10 8 6 32 32 H 1.08998 * 109.47568 * 300.00195 * 11 10 8 33 33 H 1.09003 * 109.46973 * 60.00193 * 11 10 8 34 34 H 1.09002 * 109.46815 * 299.99913 * 12 11 10 35 35 H 1.08996 * 109.46996 * 59.99922 * 12 11 10 36 36 H 0.96997 * 120.00321 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.1835 1.1039 0.0000 4 16 3.8314 0.7092 -0.0007 5 6 3.6102 -0.9967 0.0049 6 7 4.5952 -1.9728 0.0110 7 6 5.1863 -2.4089 1.2784 8 6 5.0087 -2.5201 -1.1492 9 8 4.5190 -2.1593 -2.1984 10 6 6.0787 -3.5812 -1.1424 11 6 6.3600 -4.0308 -2.5776 12 6 7.4469 -5.1077 -2.5709 13 6 7.7244 -5.5500 -3.9845 14 1 7.1798 -5.1077 -4.8055 15 6 8.6736 -6.5195 -4.2297 16 7 9.3365 -7.0586 -3.2299 17 14 9.0172 -7.0684 -5.9818 18 1 9.4764 -5.9059 -6.7836 19 1 10.0721 -8.1135 -5.9754 20 1 7.7758 -7.6225 -6.5794 21 6 2.2347 -1.1877 -0.0006 22 6 1.6228 -2.4824 -0.0007 23 7 1.1374 -3.5094 -0.0016 24 1 -0.3633 -0.0004 1.0277 25 1 -0.3633 0.8902 -0.5134 26 1 -0.3634 -0.8897 -0.5141 27 1 4.6695 -3.3010 1.6325 28 1 6.2417 -2.6361 1.1280 29 1 5.0876 -1.6143 2.0179 30 1 6.9900 -3.1754 -0.7032 31 1 5.7406 -4.4344 -0.5544 32 1 5.4486 -4.4366 -3.0165 33 1 6.6980 -3.1777 -3.1659 34 1 8.3582 -4.7014 -2.1322 35 1 7.1094 -5.9609 -1.9825 36 1 10.0040 -7.7409 -3.4023 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000891423486.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:56:34 Heat of formation + Delta-G solvation = 23.501124 kcal Electronic energy + Delta-G solvation = -20168.425887 eV Core-core repulsion = 16972.356966 eV Total energy + Delta-G solvation = -3196.068921 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 293.094 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.71188 -39.40723 -36.52635 -36.15794 -34.38278 -32.29776 -31.29016 -30.18183 -28.14161 -27.32091 -25.11714 -23.44869 -21.42200 -20.91554 -19.76448 -18.65915 -17.80440 -17.08426 -16.64795 -16.09664 -15.67399 -15.31545 -14.46786 -14.35896 -14.01870 -13.80065 -13.55586 -13.31868 -13.21089 -13.08827 -12.91534 -12.75086 -12.69231 -12.30897 -11.96654 -11.91250 -11.47800 -11.04883 -10.82985 -10.72469 -10.60331 -10.16922 -9.90150 -9.76875 -9.38373 -9.28420 -9.11306 -9.07667 -8.35642 -6.01509 -4.03261 -0.13515 0.71333 1.24863 1.37867 2.33624 2.43370 2.61971 3.11213 3.34655 3.38234 3.42001 3.71008 4.07319 4.45725 4.62378 4.66236 4.78898 4.81215 5.00596 5.09622 5.10242 5.32127 5.34761 5.47210 5.52858 5.59458 5.96262 6.04477 6.08551 6.59248 6.76131 6.82354 7.05041 7.23703 7.63950 7.75761 7.91360 7.98257 8.41399 9.03218 9.61038 11.09918 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.026591 B = 0.003099 C = 0.003040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1052.723088 B = 9031.746259 C = 9207.067675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C 0.163 3.837 3 N -0.455 5.455 4 S 0.319 5.681 5 C 0.116 3.884 6 N -0.559 5.559 7 C 0.077 3.923 8 C 0.518 3.482 9 O -0.504 6.504 10 C -0.131 4.131 11 C -0.098 4.098 12 C 0.022 3.978 13 C -0.521 4.521 14 H 0.056 0.944 15 C 0.057 3.943 16 N -0.897 5.897 17 Si 0.893 3.107 18 H -0.276 1.276 19 H -0.287 1.287 20 H -0.277 1.277 21 C -0.112 4.112 22 C 0.279 3.721 23 N -0.398 5.398 24 H 0.091 0.909 25 H 0.090 0.910 26 H 0.081 0.919 27 H 0.069 0.931 28 H 0.094 0.906 29 H 0.079 0.921 30 H 0.098 0.902 31 H 0.095 0.905 32 H 0.056 0.944 33 H 0.057 0.943 34 H 0.017 0.983 35 H 0.016 0.984 36 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.516 16.146 13.887 24.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.015 4.015 3 N -0.276 5.276 4 S 0.477 5.523 5 C -0.111 4.111 6 N -0.293 5.293 7 C -0.065 4.065 8 C 0.308 3.692 9 O -0.376 6.376 10 C -0.170 4.170 11 C -0.136 4.136 12 C -0.015 4.015 13 C -0.559 4.559 14 H 0.074 0.926 15 C -0.144 4.144 16 N -0.537 5.537 17 Si 0.720 3.280 18 H -0.202 1.202 19 H -0.213 1.213 20 H -0.202 1.202 21 C -0.137 4.137 22 C -0.039 4.039 23 N -0.074 5.074 24 H 0.109 0.891 25 H 0.109 0.891 26 H 0.100 0.900 27 H 0.088 0.912 28 H 0.113 0.887 29 H 0.098 0.902 30 H 0.116 0.884 31 H 0.114 0.886 32 H 0.074 0.926 33 H 0.076 0.924 34 H 0.035 0.965 35 H 0.035 0.965 36 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -12.471 16.712 13.317 24.742 hybrid contribution -0.299 -1.659 -0.847 1.886 sum -12.770 15.053 12.470 23.349 Atomic orbital electron populations 1.20690 0.85555 1.04659 1.04292 1.20971 0.98974 0.86449 0.95141 1.76478 1.00121 1.25287 1.25760 1.84360 1.09516 0.95155 1.63302 1.22998 0.90537 0.97213 1.00396 1.45104 1.37076 1.37529 1.09639 1.22120 1.00064 1.01126 0.83153 1.21856 0.83510 0.82289 0.81559 1.90739 1.55956 1.60578 1.30324 1.21944 0.95725 0.95689 1.03675 1.21529 1.01041 1.00321 0.90683 1.19111 0.92495 0.92529 0.97333 1.21208 1.20656 1.21090 0.92933 0.92608 1.25007 0.95989 0.96326 0.97070 1.69942 1.25218 1.27768 1.30745 0.86646 0.77945 0.78355 0.85020 1.20180 1.21289 1.20209 1.16772 0.91268 0.89301 1.16346 1.24377 0.93765 0.91766 0.93984 1.81286 1.07685 1.09848 1.08572 0.89070 0.89138 0.90012 0.91197 0.88740 0.90180 0.88429 0.88630 0.92550 0.92404 0.96457 0.96521 0.92946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.61 9.95 36.01 0.36 -0.25 16 2 C 0.16 1.59 6.75 -83.20 -0.56 1.03 16 3 N -0.45 -4.71 11.96 32.61 0.39 -4.32 16 4 S 0.32 3.14 23.69 -107.50 -2.55 0.59 16 5 C 0.12 1.33 5.41 -14.22 -0.08 1.25 16 6 N -0.56 -6.52 2.94 -122.04 -0.36 -6.88 16 7 C 0.08 0.57 10.13 59.84 0.61 1.18 16 8 C 0.52 7.94 7.63 -10.99 -0.08 7.85 16 9 O -0.50 -9.69 15.95 5.56 0.09 -9.60 16 10 C -0.13 -2.00 4.32 -27.89 -0.12 -2.12 16 11 C -0.10 -2.02 4.44 -26.73 -0.12 -2.14 16 12 C 0.02 0.56 4.97 -27.88 -0.14 0.42 16 13 C -0.52 -14.83 9.11 -34.44 -0.31 -15.15 16 14 H 0.06 1.57 7.74 -52.49 -0.41 1.16 16 15 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 16 N -0.90 -26.69 13.29 55.43 0.74 -25.96 16 17 Si 0.89 21.85 29.54 -169.99 -5.02 16.83 16 18 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 19 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 20 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 21 C -0.11 -1.28 5.75 -107.35 -0.62 -1.90 16 22 C 0.28 3.64 14.35 -22.47 -0.32 3.32 16 23 N -0.40 -5.91 18.54 41.84 0.78 -5.14 16 24 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 25 H 0.09 0.52 8.14 -51.93 -0.42 0.09 16 26 H 0.08 0.57 7.39 -51.93 -0.38 0.18 16 27 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.09 0.59 6.66 -51.93 -0.35 0.24 16 29 H 0.08 0.40 8.00 -51.93 -0.42 -0.01 16 30 H 0.10 1.26 7.41 -51.93 -0.38 0.88 16 31 H 0.10 1.34 8.11 -51.93 -0.42 0.92 16 32 H 0.06 1.24 8.10 -51.93 -0.42 0.82 16 33 H 0.06 1.23 8.10 -51.93 -0.42 0.81 16 34 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 36 H 0.26 7.34 8.31 -40.82 -0.34 7.01 16 LS Contribution 336.03 15.07 5.06 5.06 Total: -1.00 -34.39 336.03 -6.81 -41.19 By element: Atomic # 1 Polarization: -2.38 SS G_CDS: -4.45 Total: -6.83 kcal Atomic # 6 Polarization: -3.47 SS G_CDS: -1.49 Total: -4.96 kcal Atomic # 7 Polarization: -43.83 SS G_CDS: 1.54 Total: -42.29 kcal Atomic # 8 Polarization: -9.69 SS G_CDS: 0.09 Total: -9.60 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Atomic # 16 Polarization: 3.14 SS G_CDS: -2.55 Total: 0.59 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -34.39 -6.81 -41.19 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000891423486.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.694 kcal (2) G-P(sol) polarization free energy of solvation -34.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.193 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.501 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds