Wall clock time and date at job start Tue Mar 31 2020 06:56:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.29465 * 121.49830 * 2 1 4 4 S 1.69452 * 108.02945 * 180.02562 * 3 2 1 5 5 C 1.72018 * 96.08031 * 359.80146 * 4 3 2 6 6 N 1.38673 * 127.35092 * 180.22006 * 5 4 3 7 7 C 1.46494 * 120.00098 * 85.23788 * 6 5 4 8 8 C 1.34778 * 119.99656 * 265.23881 * 6 5 4 9 9 O 1.21279 * 120.00229 * 359.97438 * 8 6 5 10 10 C 1.50696 * 119.99638 * 180.02562 * 8 6 5 11 11 C 1.52999 * 109.46939 * 179.97438 * 10 8 6 12 12 C 1.53005 * 109.47284 * 179.97438 * 11 10 8 13 13 C 1.50695 * 109.47133 * 180.02562 * 12 11 10 14 14 H 1.08000 * 120.00301 * 359.97438 * 13 12 11 15 15 C 1.37877 * 119.99961 * 179.97438 * 13 12 11 16 16 N 1.31516 * 120.00154 * 0.02562 * 15 13 12 17 17 Si 1.86798 * 120.00184 * 179.97438 * 15 13 12 18 18 H 1.48500 * 109.47013 * 60.00142 * 17 15 13 19 19 H 1.48497 * 109.47396 * 180.02562 * 17 15 13 20 20 H 1.48502 * 109.46987 * 300.00176 * 17 15 13 21 21 C 1.38864 * 105.29309 * 0.32958 * 5 4 3 22 22 C 1.43203 * 123.20235 * 179.88727 * 21 5 4 23 23 N 3.52883 * 83.98767 * 180.02562 * 2 1 3 24 24 H 1.09007 * 109.46827 * 269.97782 * 1 2 3 25 25 H 1.08999 * 109.47204 * 29.97412 * 1 2 3 26 26 H 1.08992 * 109.47518 * 149.97983 * 1 2 3 27 27 H 1.09001 * 109.47526 * 95.19901 * 7 6 5 28 28 H 1.08994 * 109.47163 * 215.20026 * 7 6 5 29 29 H 1.09001 * 109.47082 * 335.19856 * 7 6 5 30 30 H 1.09002 * 109.46884 * 299.99363 * 10 8 6 31 31 H 1.08996 * 109.47270 * 59.99584 * 10 8 6 32 32 H 1.08998 * 109.47568 * 300.00195 * 11 10 8 33 33 H 1.09003 * 109.46973 * 60.00193 * 11 10 8 34 34 H 1.09002 * 109.46815 * 299.99913 * 12 11 10 35 35 H 1.08996 * 109.46996 * 59.99922 * 12 11 10 36 36 H 0.96997 * 120.00321 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.1835 1.1039 0.0000 4 16 3.8314 0.7092 -0.0007 5 6 3.6102 -0.9967 0.0049 6 7 4.5952 -1.9728 0.0110 7 6 5.1863 -2.4089 1.2784 8 6 5.0087 -2.5201 -1.1492 9 8 4.5190 -2.1593 -2.1984 10 6 6.0787 -3.5812 -1.1424 11 6 6.3600 -4.0308 -2.5776 12 6 7.4469 -5.1077 -2.5709 13 6 7.7244 -5.5500 -3.9845 14 1 7.1798 -5.1077 -4.8055 15 6 8.6736 -6.5195 -4.2297 16 7 9.3365 -7.0586 -3.2299 17 14 9.0172 -7.0684 -5.9818 18 1 9.4764 -5.9059 -6.7836 19 1 10.0721 -8.1135 -5.9754 20 1 7.7758 -7.6225 -6.5794 21 6 2.2347 -1.1877 -0.0006 22 6 1.6228 -2.4824 -0.0007 23 7 1.1374 -3.5094 -0.0016 24 1 -0.3633 -0.0004 1.0277 25 1 -0.3633 0.8902 -0.5134 26 1 -0.3634 -0.8897 -0.5141 27 1 4.6695 -3.3010 1.6325 28 1 6.2417 -2.6361 1.1280 29 1 5.0876 -1.6143 2.0179 30 1 6.9900 -3.1754 -0.7032 31 1 5.7406 -4.4344 -0.5544 32 1 5.4486 -4.4366 -3.0165 33 1 6.6980 -3.1777 -3.1659 34 1 8.3582 -4.7014 -2.1322 35 1 7.1094 -5.9609 -1.9825 36 1 10.0040 -7.7409 -3.4023 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000891423486.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:56:34 Heat of formation + Delta-G solvation = 2.229609 kcal Electronic energy + Delta-G solvation = -20169.348289 eV Core-core repulsion = 16972.356966 eV Total energy + Delta-G solvation = -3196.991323 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 293.094 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.73535 -40.34968 -37.55781 -37.21312 -36.19711 -34.14400 -32.31228 -30.83217 -29.81885 -28.04436 -26.58350 -24.89824 -22.60437 -22.06559 -21.07583 -19.57953 -18.75273 -18.55888 -18.01173 -17.43716 -16.83311 -16.50412 -16.11961 -15.39447 -15.20192 -14.91575 -14.50180 -14.40011 -14.27830 -14.12298 -14.05302 -13.81703 -13.51328 -13.41881 -13.29807 -13.15679 -12.74690 -12.60851 -12.53733 -12.44683 -11.83970 -11.59071 -11.54061 -11.32846 -11.15619 -10.73512 -10.54238 -10.21222 -9.86116 -8.20876 -6.30363 -1.01318 -0.13004 0.45139 0.55935 1.23947 1.39430 1.41650 1.45783 1.49722 1.61891 2.12676 2.40970 2.77347 3.12527 3.26151 3.53330 3.89521 4.08557 4.10449 4.15423 4.20485 4.43716 4.53052 4.64624 4.65911 4.84009 4.91564 5.03690 5.09366 5.13102 5.19592 5.32634 5.52515 5.74107 5.76756 5.87069 6.23366 6.27128 6.77673 6.84887 7.38213 8.90280 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.026591 B = 0.003099 C = 0.003040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1052.723088 B = 9031.746259 C = 9207.067675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C 0.168 3.832 3 N -0.467 5.467 4 S 0.357 5.643 5 C 0.099 3.901 6 N -0.552 5.552 7 C 0.065 3.935 8 C 0.522 3.478 9 O -0.553 6.553 10 C -0.122 4.122 11 C -0.085 4.085 12 C 0.028 3.972 13 C -0.550 4.550 14 H 0.050 0.950 15 C 0.006 3.994 16 N -0.927 5.927 17 Si 0.958 3.042 18 H -0.268 1.268 19 H -0.278 1.278 20 H -0.272 1.272 21 C -0.125 4.125 22 C 0.296 3.704 23 N -0.437 5.437 24 H 0.112 0.888 25 H 0.102 0.898 26 H 0.078 0.922 27 H 0.075 0.925 28 H 0.110 0.890 29 H 0.107 0.893 30 H 0.127 0.873 31 H 0.112 0.888 32 H 0.035 0.965 33 H 0.047 0.953 34 H 0.008 0.992 35 H 0.001 0.999 36 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.586 17.277 14.666 25.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.009 4.009 3 N -0.289 5.289 4 S 0.515 5.485 5 C -0.128 4.128 6 N -0.285 5.285 7 C -0.075 4.075 8 C 0.312 3.688 9 O -0.429 6.429 10 C -0.161 4.161 11 C -0.123 4.123 12 C -0.009 4.009 13 C -0.588 4.588 14 H 0.068 0.932 15 C -0.192 4.192 16 N -0.567 5.567 17 Si 0.783 3.217 18 H -0.193 1.193 19 H -0.204 1.204 20 H -0.197 1.197 21 C -0.151 4.151 22 C -0.021 4.021 23 N -0.113 5.113 24 H 0.131 0.869 25 H 0.121 0.879 26 H 0.096 0.904 27 H 0.094 0.906 28 H 0.128 0.872 29 H 0.126 0.874 30 H 0.145 0.855 31 H 0.130 0.870 32 H 0.054 0.946 33 H 0.065 0.935 34 H 0.026 0.974 35 H 0.019 0.981 36 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -12.545 17.863 14.151 26.014 hybrid contribution -0.274 -1.939 -1.028 2.211 sum -12.818 15.925 13.123 24.292 Atomic orbital electron populations 1.20834 0.83547 1.05071 1.05809 1.21248 1.00196 0.85524 0.93967 1.76475 1.00540 1.25461 1.26402 1.84240 1.09150 0.92961 1.62101 1.23249 0.90589 0.98241 1.00759 1.44981 1.36605 1.37001 1.09892 1.22506 1.00734 1.02440 0.81815 1.21653 0.83161 0.82071 0.81933 1.90721 1.57646 1.62236 1.32284 1.21766 0.97477 0.96703 1.00191 1.21216 0.98423 0.98391 0.94293 1.18988 0.93353 0.93121 0.95426 1.21662 1.21005 1.21647 0.94456 0.93178 1.25851 0.95698 0.96305 1.01387 1.70040 1.25667 1.28218 1.32810 0.85612 0.78007 0.78211 0.79914 1.19322 1.20353 1.19723 1.16930 0.91482 0.89131 1.17514 1.24586 0.92893 0.91770 0.92846 1.81293 1.08931 1.10941 1.10152 0.86929 0.87893 0.90365 0.90647 0.87190 0.87419 0.85468 0.87017 0.94562 0.93457 0.97380 0.98109 0.92632 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.06 9.95 71.24 0.71 -0.35 16 2 C 0.17 3.02 6.75 43.16 0.29 3.31 16 3 N -0.47 -8.77 11.96 -50.75 -0.61 -9.37 16 4 S 0.36 6.34 23.69 -56.49 -1.34 5.00 16 5 C 0.10 2.12 5.41 83.76 0.45 2.58 16 6 N -0.55 -11.97 2.94 -658.43 -1.94 -13.91 16 7 C 0.06 0.79 10.13 127.77 1.29 2.08 16 8 C 0.52 15.58 7.63 87.66 0.67 16.25 16 9 O -0.55 -21.39 15.95 -3.03 -0.05 -21.44 16 10 C -0.12 -3.61 4.32 29.85 0.13 -3.48 16 11 C -0.08 -3.57 4.44 30.60 0.14 -3.44 16 12 C 0.03 1.44 4.97 29.85 0.15 1.59 16 13 C -0.55 -31.82 9.11 25.60 0.23 -31.58 16 14 H 0.05 2.88 7.74 -2.91 -0.02 2.85 16 15 C 0.01 0.34 5.46 84.65 0.46 0.80 16 16 N -0.93 -55.41 13.29 21.45 0.28 -55.13 16 17 Si 0.96 44.80 29.54 68.60 2.03 46.82 16 18 H -0.27 -12.12 7.11 99.48 0.71 -11.42 16 19 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 20 H -0.27 -12.45 7.11 99.48 0.71 -11.74 16 21 C -0.13 -2.73 5.75 -21.63 -0.12 -2.85 16 22 C 0.30 7.60 14.35 88.33 1.27 8.86 16 23 N -0.44 -12.98 18.54 19.00 0.35 -12.62 16 24 H 0.11 0.84 8.14 -2.38 -0.02 0.82 16 25 H 0.10 0.96 8.14 -2.39 -0.02 0.94 16 26 H 0.08 0.99 7.39 -2.39 -0.02 0.97 16 27 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 28 H 0.11 1.01 6.66 -2.39 -0.02 1.00 16 29 H 0.11 0.73 8.00 -2.39 -0.02 0.71 16 30 H 0.13 3.00 7.41 -2.39 -0.02 2.99 16 31 H 0.11 2.97 8.11 -2.39 -0.02 2.95 16 32 H 0.04 1.63 8.10 -2.39 -0.02 1.62 16 33 H 0.05 2.05 8.10 -2.39 -0.02 2.04 16 34 H 0.01 0.41 8.14 -2.39 -0.02 0.39 16 35 H 0.00 0.03 8.14 -2.39 -0.02 0.01 16 36 H 0.26 14.88 8.31 -92.71 -0.77 14.11 16 Total: -1.00 -75.13 336.03 5.50 -69.63 By element: Atomic # 1 Polarization: -3.84 SS G_CDS: 1.10 Total: -2.74 kcal Atomic # 6 Polarization: -11.90 SS G_CDS: 5.67 Total: -6.23 kcal Atomic # 7 Polarization: -89.13 SS G_CDS: -1.91 Total: -91.04 kcal Atomic # 8 Polarization: -21.39 SS G_CDS: -0.05 Total: -21.44 kcal Atomic # 14 Polarization: 44.80 SS G_CDS: 2.03 Total: 46.82 kcal Atomic # 16 Polarization: 6.34 SS G_CDS: -1.34 Total: 5.00 kcal Total: -75.13 5.50 -69.63 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000891423486.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.855 kcal (2) G-P(sol) polarization free energy of solvation -75.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.626 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds