Wall clock time and date at job start Tue Mar 31 2020 06:31:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31635 * 1 3 3 Si 1.86801 * 120.00034 * 2 1 4 4 H 1.48500 * 109.46994 * 240.00303 * 3 2 1 5 5 H 1.48499 * 109.47005 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.46877 * 120.00332 * 3 2 1 7 7 C 1.38793 * 119.99954 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00478 * 179.97438 * 7 2 1 9 9 S 1.76200 * 119.99984 * 359.97438 * 7 2 1 10 10 C 1.81001 * 100.00152 * 179.97438 * 9 7 2 11 11 C 1.50698 * 109.47381 * 180.02562 * 10 9 7 12 12 O 1.21287 * 119.99918 * 359.97438 * 11 10 9 13 13 N 1.34779 * 120.00454 * 179.72732 * 11 10 9 14 14 C 1.46491 * 120.00137 * 175.37863 * 13 11 10 15 15 C 1.50703 * 112.85332 * 294.93306 * 14 13 11 16 16 N 1.31799 * 119.12062 * 121.25449 * 15 14 13 17 17 C 1.32339 * 120.81525 * 179.76215 * 16 15 14 18 18 C 1.38595 * 119.10028 * 0.51066 * 17 16 15 19 19 C 1.38597 * 118.40605 * 359.74680 * 18 17 16 20 20 N 1.31791 * 119.12421 * 301.53282 * 15 14 13 21 21 C 1.53786 * 113.61306 * 163.62895 * 14 13 11 22 22 C 1.53774 * 87.08364 * 270.88359 * 21 14 13 23 23 C 1.53782 * 87.08196 * 334.56725 * 22 21 14 24 24 H 0.97001 * 120.00093 * 359.97438 * 1 2 3 25 25 H 1.08999 * 109.46895 * 60.00155 * 10 9 7 26 26 H 1.09003 * 109.47370 * 300.00124 * 10 9 7 27 27 H 0.96999 * 119.99328 * 355.37999 * 13 11 10 28 28 H 1.07991 * 120.44498 * 180.27790 * 17 16 15 29 29 H 1.08000 * 120.79817 * 179.77212 * 18 17 16 30 30 H 1.08000 * 120.45153 * 179.97438 * 19 18 17 31 31 H 1.09003 * 113.61161 * 25.43230 * 21 14 13 32 32 H 1.09000 * 113.61235 * 156.33235 * 21 14 13 33 33 H 1.08996 * 113.61947 * 220.02210 * 22 21 14 34 34 H 1.09000 * 113.61503 * 89.11193 * 22 21 14 35 35 H 1.09004 * 113.61659 * 270.88677 * 23 22 21 36 36 H 1.08998 * 113.61619 * 139.97697 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3164 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 3.1041 1.6964 -1.2125 5 1 1.2854 2.7464 -0.0006 6 1 3.1041 1.6963 1.2124 7 6 2.0103 -1.2020 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 16 1.1293 -2.7279 -0.0005 10 6 2.5158 -3.8914 -0.0021 11 6 1.9873 -5.3027 -0.0030 12 8 0.7910 -5.5023 -0.0021 13 7 2.8440 -6.3432 -0.0098 14 6 2.3339 -7.7127 0.0916 15 6 1.6673 -7.9926 1.4138 16 7 0.4068 -8.3773 1.4279 17 6 -0.2102 -8.6365 2.5696 18 6 0.4842 -8.4881 3.7599 19 6 1.8065 -8.0767 3.7049 20 7 2.3586 -7.8407 2.5256 21 6 3.3569 -8.7833 -0.3235 22 6 2.8172 -8.6316 -1.7554 23 6 1.4999 -8.1510 -1.1238 24 1 -0.4850 0.8400 0.0004 25 1 3.1251 -3.7318 0.8875 26 1 3.1238 -3.7310 -0.8925 27 1 3.7983 -6.1851 -0.0818 28 1 -1.2418 -8.9557 2.5739 29 1 0.0064 -8.6886 4.7075 30 1 2.3785 -7.9499 4.6122 31 1 4.3930 -8.4640 -0.2113 32 1 3.1652 -9.7632 0.1139 33 1 2.7256 -9.5769 -2.2900 34 1 3.3287 -7.8637 -2.3357 35 1 0.8005 -8.9580 -0.9053 36 1 1.0369 -7.3212 -1.6577 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000893658375.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:31:54 Heat of formation + Delta-G solvation = 40.224297 kcal Electronic energy + Delta-G solvation = -20792.572209 eV Core-core repulsion = 17597.228459 eV Total energy + Delta-G solvation = -3195.343750 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 293.094 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.36529 -39.68200 -37.68213 -33.74234 -32.98986 -32.41279 -32.08816 -29.10882 -26.10857 -25.95879 -25.43057 -24.34228 -22.78931 -20.70244 -19.32906 -17.83554 -17.54779 -17.36011 -16.28575 -15.95919 -15.55683 -14.97794 -14.79470 -14.66914 -14.45823 -14.22968 -13.70871 -13.59573 -13.11821 -12.56821 -12.48809 -12.17451 -11.87085 -11.29361 -11.04132 -11.02935 -11.02677 -10.80171 -10.76024 -10.73397 -10.52578 -9.81704 -9.68202 -9.21269 -9.20624 -9.04925 -8.90608 -8.22066 -6.48166 -6.20081 -3.90535 0.83222 1.09754 2.96507 3.10387 3.24528 3.27753 3.30854 3.60759 3.76817 3.85475 4.11288 4.22058 4.46750 4.54263 4.60758 4.84135 4.90410 4.98526 5.04683 5.14934 5.20602 5.38691 5.52211 5.66799 5.68398 5.73713 5.76793 5.90861 5.97942 6.15929 6.20466 6.25324 6.33602 6.73591 6.99160 7.60679 7.73675 8.11785 8.36547 8.65624 9.25028 10.87317 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.020924 B = 0.004000 C = 0.003671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1337.867889 B = 6998.296096 C = 7626.244078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.074 3.926 3 Si 0.918 3.082 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.274 1.274 7 C -0.536 4.536 8 H 0.072 0.928 9 S -0.059 6.059 10 C -0.151 4.151 11 C 0.531 3.469 12 O -0.502 6.502 13 N -0.709 5.709 14 C 0.219 3.781 15 C 0.328 3.672 16 N -0.492 5.492 17 C 0.147 3.853 18 C -0.233 4.233 19 C 0.143 3.857 20 N -0.509 5.509 21 C -0.121 4.121 22 C -0.142 4.142 23 C -0.120 4.120 24 H 0.269 0.731 25 H 0.089 0.911 26 H 0.090 0.910 27 H 0.403 0.597 28 H 0.167 0.833 29 H 0.146 0.854 30 H 0.166 0.834 31 H 0.080 0.920 32 H 0.090 0.910 33 H 0.073 0.927 34 H 0.085 0.915 35 H 0.098 0.902 36 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.322 -20.432 3.625 21.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.504 5.504 2 C -0.135 4.135 3 Si 0.745 3.255 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.200 1.200 7 C -0.684 4.684 8 H 0.090 0.910 9 S 0.168 5.832 10 C -0.302 4.302 11 C 0.317 3.683 12 O -0.375 6.375 13 N -0.364 5.364 14 C 0.130 3.870 15 C 0.059 3.941 16 N -0.205 5.205 17 C -0.019 4.019 18 C -0.255 4.255 19 C -0.023 4.023 20 N -0.222 5.222 21 C -0.160 4.160 22 C -0.179 4.179 23 C -0.159 4.159 24 H 0.078 0.922 25 H 0.107 0.893 26 H 0.108 0.892 27 H 0.238 0.762 28 H 0.185 0.815 29 H 0.163 0.837 30 H 0.183 0.817 31 H 0.099 0.901 32 H 0.108 0.892 33 H 0.092 0.908 34 H 0.103 0.897 35 H 0.117 0.883 36 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 4.577 -20.436 2.769 21.125 hybrid contribution 1.920 1.336 1.187 2.622 sum 6.497 -19.101 3.956 20.559 Atomic orbital electron populations 1.70013 1.05959 1.27535 1.46865 1.24983 0.95012 0.98992 0.94530 0.86228 0.79243 0.81248 0.78815 1.19904 1.20805 1.19952 1.22833 0.94889 0.91693 1.58986 0.90991 1.85389 1.04888 0.96237 1.96717 1.23526 1.06581 0.95204 1.04908 1.20373 0.86685 0.86107 0.75099 1.90737 1.15058 1.85309 1.46375 1.45616 1.10251 1.03397 1.77144 1.19664 0.95663 0.83686 0.88036 1.23114 0.86894 0.90196 0.93878 1.68166 1.09876 1.11952 1.30506 1.23260 1.00095 0.91017 0.87519 1.22902 0.97411 1.04056 1.01162 1.23214 0.92621 0.90350 0.96092 1.68178 1.39977 1.15260 0.98783 1.23129 0.98373 0.97748 0.96734 1.22905 0.97582 1.01871 0.95583 1.23136 0.96370 1.02159 0.94214 0.92153 0.89304 0.89185 0.76163 0.81538 0.83655 0.81684 0.90144 0.89155 0.90824 0.89680 0.88332 0.89771 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.51 13.22 55.49 0.73 -25.78 16 2 C 0.07 2.14 5.49 -17.43 -0.10 2.04 16 3 Si 0.92 21.63 29.55 -169.99 -5.02 16.61 16 4 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 5 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 6 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 7 C -0.54 -15.50 9.50 30.94 0.29 -15.21 16 8 H 0.07 1.97 7.80 -52.49 -0.41 1.56 16 9 S -0.06 -1.63 20.57 -107.50 -2.21 -3.84 16 10 C -0.15 -3.18 6.16 36.00 0.22 -2.95 16 11 C 0.53 10.42 7.40 -10.99 -0.08 10.34 16 12 O -0.50 -11.74 14.44 5.55 0.08 -11.66 16 13 N -0.71 -10.50 5.14 -47.92 -0.25 -10.75 16 14 C 0.22 3.03 0.92 -132.16 -0.12 2.91 16 15 C 0.33 5.03 6.06 -157.19 -0.95 4.08 16 16 N -0.49 -7.50 9.07 -10.73 -0.10 -7.60 16 17 C 0.15 1.77 11.31 -17.20 -0.19 1.57 16 18 C -0.23 -2.38 10.17 -39.32 -0.40 -2.78 16 19 C 0.14 1.66 11.31 -17.20 -0.19 1.46 16 20 N -0.51 -7.38 10.33 -10.72 -0.11 -7.49 16 21 C -0.12 -1.21 7.36 -25.92 -0.19 -1.40 16 22 C -0.14 -1.40 7.99 -25.92 -0.21 -1.61 16 23 C -0.12 -1.61 6.61 -25.92 -0.17 -1.78 16 24 H 0.27 7.63 8.31 -40.82 -0.34 7.29 16 25 H 0.09 1.77 8.14 -51.92 -0.42 1.34 16 26 H 0.09 1.72 8.14 -51.91 -0.42 1.30 16 27 H 0.40 4.74 8.66 -40.82 -0.35 4.39 16 28 H 0.17 1.43 8.06 -52.49 -0.42 1.01 16 29 H 0.15 0.95 8.06 -52.49 -0.42 0.53 16 30 H 0.17 1.33 8.06 -52.49 -0.42 0.91 16 31 H 0.08 0.69 8.09 -51.93 -0.42 0.27 16 32 H 0.09 0.85 8.10 -51.93 -0.42 0.43 16 33 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 35 H 0.10 1.30 7.44 -51.93 -0.39 0.91 16 36 H 0.08 1.36 7.27 -51.93 -0.38 0.98 16 LS Contribution 326.35 15.07 4.92 4.92 Total: -1.00 -36.81 326.35 -8.51 -45.32 By element: Atomic # 1 Polarization: 8.05 SS G_CDS: -4.46 Total: 3.59 kcal Atomic # 6 Polarization: -1.23 SS G_CDS: -2.09 Total: -3.33 kcal Atomic # 7 Polarization: -51.89 SS G_CDS: 0.28 Total: -51.61 kcal Atomic # 8 Polarization: -11.74 SS G_CDS: 0.08 Total: -11.66 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Atomic # 16 Polarization: -1.63 SS G_CDS: -2.21 Total: -3.84 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -36.81 -8.51 -45.32 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000893658375.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.547 kcal (2) G-P(sol) polarization free energy of solvation -36.808 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.322 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds