Wall clock time and date at job start Tue Mar 31 2020 06:31:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31635 * 1 3 3 Si 1.86801 * 120.00034 * 2 1 4 4 H 1.48500 * 109.46994 * 240.00303 * 3 2 1 5 5 H 1.48499 * 109.47005 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.46877 * 120.00332 * 3 2 1 7 7 C 1.38793 * 119.99954 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00478 * 179.97438 * 7 2 1 9 9 S 1.76200 * 119.99984 * 359.97438 * 7 2 1 10 10 C 1.81001 * 100.00152 * 179.97438 * 9 7 2 11 11 C 1.50698 * 109.47381 * 180.02562 * 10 9 7 12 12 O 1.21287 * 119.99918 * 359.97438 * 11 10 9 13 13 N 1.34779 * 120.00454 * 179.72732 * 11 10 9 14 14 C 1.46491 * 120.00137 * 175.37863 * 13 11 10 15 15 C 1.50703 * 112.85332 * 294.93306 * 14 13 11 16 16 N 1.31799 * 119.12062 * 121.25449 * 15 14 13 17 17 C 1.32339 * 120.81525 * 179.76215 * 16 15 14 18 18 C 1.38595 * 119.10028 * 0.51066 * 17 16 15 19 19 C 1.38597 * 118.40605 * 359.74680 * 18 17 16 20 20 N 1.31791 * 119.12421 * 301.53282 * 15 14 13 21 21 C 1.53786 * 113.61306 * 163.62895 * 14 13 11 22 22 C 1.53774 * 87.08364 * 270.88359 * 21 14 13 23 23 C 1.53782 * 87.08196 * 334.56725 * 22 21 14 24 24 H 0.97001 * 120.00093 * 359.97438 * 1 2 3 25 25 H 1.08999 * 109.46895 * 60.00155 * 10 9 7 26 26 H 1.09003 * 109.47370 * 300.00124 * 10 9 7 27 27 H 0.96999 * 119.99328 * 355.37999 * 13 11 10 28 28 H 1.07991 * 120.44498 * 180.27790 * 17 16 15 29 29 H 1.08000 * 120.79817 * 179.77212 * 18 17 16 30 30 H 1.08000 * 120.45153 * 179.97438 * 19 18 17 31 31 H 1.09003 * 113.61161 * 25.43230 * 21 14 13 32 32 H 1.09000 * 113.61235 * 156.33235 * 21 14 13 33 33 H 1.08996 * 113.61947 * 220.02210 * 22 21 14 34 34 H 1.09000 * 113.61503 * 89.11193 * 22 21 14 35 35 H 1.09004 * 113.61659 * 270.88677 * 23 22 21 36 36 H 1.08998 * 113.61619 * 139.97697 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3164 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 3.1041 1.6964 -1.2125 5 1 1.2854 2.7464 -0.0006 6 1 3.1041 1.6963 1.2124 7 6 2.0103 -1.2020 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 16 1.1293 -2.7279 -0.0005 10 6 2.5158 -3.8914 -0.0021 11 6 1.9873 -5.3027 -0.0030 12 8 0.7910 -5.5023 -0.0021 13 7 2.8440 -6.3432 -0.0098 14 6 2.3339 -7.7127 0.0916 15 6 1.6673 -7.9926 1.4138 16 7 0.4068 -8.3773 1.4279 17 6 -0.2102 -8.6365 2.5696 18 6 0.4842 -8.4881 3.7599 19 6 1.8065 -8.0767 3.7049 20 7 2.3586 -7.8407 2.5256 21 6 3.3569 -8.7833 -0.3235 22 6 2.8172 -8.6316 -1.7554 23 6 1.4999 -8.1510 -1.1238 24 1 -0.4850 0.8400 0.0004 25 1 3.1251 -3.7318 0.8875 26 1 3.1238 -3.7310 -0.8925 27 1 3.7983 -6.1851 -0.0818 28 1 -1.2418 -8.9557 2.5739 29 1 0.0064 -8.6886 4.7075 30 1 2.3785 -7.9499 4.6122 31 1 4.3930 -8.4640 -0.2113 32 1 3.1652 -9.7632 0.1139 33 1 2.7256 -9.5769 -2.2900 34 1 3.3287 -7.8637 -2.3357 35 1 0.8005 -8.9580 -0.9053 36 1 1.0369 -7.3212 -1.6577 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000893658375.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:31:53 Heat of formation + Delta-G solvation = 13.562281 kcal Electronic energy + Delta-G solvation = -20793.728360 eV Core-core repulsion = 17597.228459 eV Total energy + Delta-G solvation = -3196.499901 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 293.094 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.36194 -40.86342 -38.97638 -34.74868 -34.60691 -34.29683 -33.01041 -30.70523 -27.72949 -27.04115 -26.88071 -25.25195 -23.76157 -22.05659 -20.42367 -19.85662 -18.56396 -18.33518 -17.82349 -17.01024 -16.89549 -16.64582 -16.18036 -16.08568 -15.55007 -15.51625 -15.06890 -14.70087 -14.43862 -14.34747 -13.72433 -13.32195 -13.19043 -12.99630 -12.87746 -12.64124 -12.23581 -11.94760 -11.80791 -11.76230 -11.70853 -11.48596 -11.14519 -10.94770 -10.41576 -10.30699 -10.21927 -10.14111 -8.69469 -8.36244 -6.15036 -0.09172 0.18802 1.23525 1.42870 1.44104 1.54004 1.56999 2.14745 2.26087 2.76327 2.92310 2.97850 3.16714 3.30174 3.55152 3.70835 3.76209 3.86420 4.01522 4.08224 4.21892 4.25425 4.28913 4.45532 4.54444 4.73820 4.79646 4.85627 5.01357 5.06097 5.14182 5.24821 5.39411 5.45369 5.59622 6.08260 6.17729 6.46492 7.04655 7.15263 7.22303 8.72887 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.020924 B = 0.004000 C = 0.003671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1337.867889 B = 6998.296096 C = 7626.244078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.015 3.985 3 Si 0.999 3.001 4 H -0.261 1.261 5 H -0.278 1.278 6 H -0.262 1.262 7 C -0.548 4.548 8 H 0.082 0.918 9 S -0.148 6.148 10 C -0.127 4.127 11 C 0.533 3.467 12 O -0.547 6.547 13 N -0.686 5.686 14 C 0.202 3.798 15 C 0.303 3.697 16 N -0.525 5.525 17 C 0.126 3.874 18 C -0.219 4.219 19 C 0.128 3.872 20 N -0.529 5.529 21 C -0.103 4.103 22 C -0.126 4.126 23 C -0.126 4.126 24 H 0.271 0.729 25 H 0.103 0.897 26 H 0.112 0.888 27 H 0.420 0.580 28 H 0.193 0.807 29 H 0.186 0.814 30 H 0.199 0.801 31 H 0.102 0.898 32 H 0.099 0.901 33 H 0.095 0.905 34 H 0.090 0.910 35 H 0.094 0.906 36 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.738 -21.114 4.463 23.282 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.190 4.190 3 Si 0.820 3.180 4 H -0.185 1.185 5 H -0.203 1.203 6 H -0.187 1.187 7 C -0.696 4.696 8 H 0.100 0.900 9 S 0.079 5.921 10 C -0.278 4.278 11 C 0.319 3.681 12 O -0.423 6.423 13 N -0.341 5.341 14 C 0.113 3.887 15 C 0.034 3.966 16 N -0.239 5.239 17 C -0.039 4.039 18 C -0.240 4.240 19 C -0.038 4.038 20 N -0.243 5.243 21 C -0.141 4.141 22 C -0.163 4.163 23 C -0.165 4.165 24 H 0.080 0.920 25 H 0.121 0.879 26 H 0.130 0.870 27 H 0.258 0.742 28 H 0.209 0.791 29 H 0.203 0.797 30 H 0.215 0.785 31 H 0.120 0.880 32 H 0.117 0.883 33 H 0.114 0.886 34 H 0.108 0.892 35 H 0.113 0.887 36 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 7.041 -21.162 3.612 22.593 hybrid contribution 1.126 1.410 1.006 2.066 sum 8.167 -19.752 4.619 21.867 Atomic orbital electron populations 1.70183 1.08024 1.28712 1.47936 1.26134 0.95951 1.03320 0.93605 0.84997 0.77818 0.75595 0.79549 1.18535 1.20277 1.18675 1.23174 0.95341 0.91999 1.59100 0.89973 1.85569 1.10339 0.99128 1.97046 1.23350 1.03640 0.94284 1.06551 1.20127 0.86439 0.86477 0.75044 1.90726 1.16983 1.85803 1.48804 1.45320 1.10489 1.03184 1.75065 1.20046 0.97350 0.83348 0.87958 1.23265 0.87291 0.91473 0.94569 1.68144 1.10304 1.13129 1.32361 1.23867 1.01429 0.91007 0.87603 1.23318 0.96809 1.01750 1.02123 1.23904 0.93719 0.89800 0.96331 1.68177 1.40544 1.16043 0.99497 1.23099 0.98428 0.96667 0.95951 1.22872 0.94768 1.02857 0.95850 1.23112 0.97848 1.00912 0.94667 0.91960 0.87898 0.86999 0.74214 0.79059 0.79683 0.78453 0.88004 0.88289 0.88640 0.89188 0.88713 0.93444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.87 13.22 21.65 0.29 -56.58 16 2 C 0.01 0.84 5.49 84.86 0.47 1.31 16 3 Si 1.00 44.07 29.55 68.60 2.03 46.10 16 4 H -0.26 -10.88 7.11 99.48 0.71 -10.18 16 5 H -0.28 -11.90 7.11 99.48 0.71 -11.20 16 6 H -0.26 -10.97 7.11 99.48 0.71 -10.27 16 7 C -0.55 -31.95 9.50 67.95 0.65 -31.30 16 8 H 0.08 4.44 7.80 -2.91 -0.02 4.42 16 9 S -0.15 -8.46 20.57 -56.49 -1.16 -9.62 16 10 C -0.13 -5.31 6.16 71.24 0.44 -4.87 16 11 C 0.53 21.16 7.40 87.66 0.65 21.81 16 12 O -0.55 -26.66 14.44 -3.05 -0.04 -26.70 16 13 N -0.69 -19.80 5.14 -423.92 -2.18 -21.98 16 14 C 0.20 5.48 0.92 3.39 0.00 5.48 16 15 C 0.30 9.22 6.06 138.75 0.84 10.06 16 16 N -0.53 -16.23 9.07 -187.85 -1.70 -17.93 16 17 C 0.13 2.94 11.31 84.70 0.96 3.90 16 18 C -0.22 -4.01 10.17 22.44 0.23 -3.78 16 19 C 0.13 2.72 11.31 84.70 0.96 3.67 16 20 N -0.53 -14.78 10.33 -187.84 -1.94 -16.72 16 21 C -0.10 -1.83 7.36 31.12 0.23 -1.60 16 22 C -0.13 -2.26 7.99 31.12 0.25 -2.01 16 23 C -0.13 -3.44 6.61 31.12 0.21 -3.24 16 24 H 0.27 15.71 8.31 -92.71 -0.77 14.94 16 25 H 0.10 4.00 8.14 -2.40 -0.02 3.98 16 26 H 0.11 4.16 8.14 -2.39 -0.02 4.14 16 27 H 0.42 9.04 8.66 -92.71 -0.80 8.24 16 28 H 0.19 3.14 8.06 -2.92 -0.02 3.11 16 29 H 0.19 1.77 8.06 -2.91 -0.02 1.75 16 30 H 0.20 2.63 8.06 -2.91 -0.02 2.61 16 31 H 0.10 1.39 8.09 -2.39 -0.02 1.37 16 32 H 0.10 1.64 8.10 -2.39 -0.02 1.62 16 33 H 0.10 1.32 8.14 -2.39 -0.02 1.30 16 34 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 35 H 0.09 2.59 7.44 -2.39 -0.02 2.57 16 36 H 0.05 1.62 7.27 -2.39 -0.02 1.60 16 Total: -1.00 -83.93 326.35 1.46 -82.48 By element: Atomic # 1 Polarization: 21.23 SS G_CDS: 0.30 Total: 21.53 kcal Atomic # 6 Polarization: -6.44 SS G_CDS: 5.87 Total: -0.57 kcal Atomic # 7 Polarization: -107.67 SS G_CDS: -5.54 Total: -113.21 kcal Atomic # 8 Polarization: -26.66 SS G_CDS: -0.04 Total: -26.70 kcal Atomic # 14 Polarization: 44.07 SS G_CDS: 2.03 Total: 46.10 kcal Atomic # 16 Polarization: -8.46 SS G_CDS: -1.16 Total: -9.62 kcal Total: -83.93 1.46 -82.48 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000893658375.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.039 kcal (2) G-P(sol) polarization free energy of solvation -83.933 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.107 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.456 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.477 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds