Wall clock time and date at job start Tue Mar 31 2020 06:36:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31423 * 1 3 3 Si 1.86805 * 119.99641 * 2 1 4 4 H 1.48497 * 109.47074 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.46905 * 299.99834 * 3 2 1 6 6 H 1.48500 * 109.47155 * 59.99872 * 3 2 1 7 7 C 1.38958 * 120.00308 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00432 * 163.74813 * 7 2 1 9 9 N 1.36919 * 120.00194 * 343.74761 * 7 2 1 10 10 C 1.34775 * 120.00335 * 150.94798 * 9 7 2 11 11 O 1.21799 * 119.99857 * 4.99600 * 10 9 7 12 12 C 1.41846 * 120.00379 * 184.99804 * 10 9 7 13 13 C 1.36857 * 126.11828 * 186.55099 * 12 10 9 14 14 N 1.30847 * 113.99851 * 180.02562 * 13 12 10 15 15 C 1.30249 * 117.28164 * 0.02562 * 14 13 12 16 16 N 1.37810 * 124.74262 * 180.02562 * 15 14 13 17 17 C 1.46500 * 119.99323 * 359.97438 * 16 15 14 18 18 C 1.53010 * 117.49591 * 223.74336 * 17 16 15 19 19 C 1.53006 * 117.49600 * 155.08668 * 17 16 15 20 20 S 1.70924 * 110.52164 * 359.97438 * 15 14 13 21 21 C 1.46500 * 119.99741 * 330.94996 * 9 7 2 22 22 C 1.52994 * 117.50236 * 315.52660 * 21 9 7 23 23 C 1.53000 * 117.49948 * 246.86196 * 21 9 7 24 24 H 0.97003 * 120.00303 * 5.05543 * 1 2 3 25 25 H 1.07998 * 122.99989 * 359.97438 * 13 12 10 26 26 H 0.96996 * 120.00293 * 179.97438 * 16 15 14 27 27 H 1.08996 * 115.55805 * 9.41776 * 17 16 15 28 28 H 1.08994 * 117.49552 * 0.02562 * 18 17 16 29 29 H 1.08994 * 117.49613 * 145.02290 * 18 17 16 30 30 H 1.09003 * 117.50290 * 214.97720 * 19 17 16 31 31 H 1.08998 * 117.49917 * 359.97438 * 19 17 16 32 32 H 1.09006 * 115.54845 * 101.19762 * 21 9 7 33 33 H 1.09009 * 117.49769 * 359.97438 * 22 21 9 34 34 H 1.09001 * 117.50501 * 145.02006 * 22 21 9 35 35 H 1.08994 * 117.50386 * 214.97819 * 23 21 9 36 36 H 1.08995 * 117.49547 * 0.02562 * 23 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2482 1.6178 0.0000 4 1 3.7081 1.3466 -0.0006 5 1 1.8894 2.3964 -1.2125 6 1 1.8893 2.3965 1.2125 7 6 2.0091 -1.2034 -0.0005 8 1 3.0568 -1.2220 -0.2623 9 7 1.3656 -2.3656 0.3308 10 6 1.7775 -3.5370 -0.1933 11 8 2.7767 -3.5751 -0.8888 12 6 1.0475 -4.7254 0.0651 13 6 1.4168 -5.9933 -0.2943 14 7 0.5632 -6.9180 0.0641 15 6 -0.5047 -6.5301 0.7010 16 7 -1.5008 -7.3706 1.1488 17 6 -1.4004 -8.8137 0.9173 18 6 -2.6604 -9.5429 0.4462 19 6 -2.1530 -9.7373 1.8773 20 16 -0.4975 -4.8331 0.9050 21 6 0.2293 -2.3359 1.2550 22 6 0.3665 -1.4805 2.5160 23 6 0.4095 -3.0073 2.6180 24 1 -0.4851 0.8368 -0.0740 25 1 2.3308 -6.2110 -0.8268 26 1 -2.2682 -7.0068 1.6173 27 1 -0.4429 -9.1624 0.5305 28 1 -3.5637 -8.9488 0.3083 29 1 -2.5316 -10.3715 -0.2501 30 1 -1.6907 -10.6937 2.1219 31 1 -2.7224 -9.2711 2.6814 32 1 -0.7554 -2.3947 0.7913 33 1 1.3024 -0.9401 2.6583 34 1 -0.5280 -0.9767 2.8823 35 1 -0.4567 -3.5073 3.0512 36 1 1.3736 -3.4707 2.8271 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000900359750.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:36:37 Heat of formation + Delta-G solvation = 66.972033 kcal Electronic energy + Delta-G solvation = -21067.295220 eV Core-core repulsion = 17873.111339 eV Total energy + Delta-G solvation = -3194.183881 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 293.094 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.00084 -40.33559 -38.60306 -37.84068 -35.05157 -34.44024 -33.15122 -30.52066 -27.28443 -25.80750 -23.92898 -23.33942 -23.22422 -23.17585 -21.86156 -20.32966 -19.44523 -18.82524 -17.77454 -17.29942 -17.10165 -16.47097 -16.23002 -15.96503 -15.75880 -15.23653 -15.09780 -14.81927 -14.62920 -13.85768 -13.62999 -13.19689 -12.92719 -12.83852 -12.65925 -12.50260 -12.37099 -12.16336 -12.07554 -11.76406 -11.46298 -11.39014 -10.94529 -10.67484 -10.43094 -10.29337 -9.90043 -9.63936 -8.53737 -8.33372 -5.94967 -0.33530 0.23932 0.83615 1.37356 1.42361 1.54917 1.74556 2.16873 2.27706 2.52057 2.85993 3.01950 3.03376 3.20683 3.55573 3.90967 4.03745 4.10206 4.13956 4.18628 4.26985 4.45812 4.59415 4.75295 4.76555 4.80557 5.04347 5.05120 5.19624 5.24932 5.25612 5.36472 5.48934 5.90285 6.09887 6.20151 6.51502 7.02347 7.15453 7.40628 8.00561 8.71199 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.033282 B = 0.004318 C = 0.004029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 841.090219 B = 6482.782896 C = 6948.707841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.873 5.873 2 C 0.021 3.979 3 Si 0.978 3.022 4 H -0.277 1.277 5 H -0.276 1.276 6 H -0.260 1.260 7 C -0.349 4.349 8 H 0.066 0.934 9 N -0.422 5.422 10 C 0.518 3.482 11 O -0.635 6.635 12 C -0.343 4.343 13 C 0.148 3.852 14 N -0.571 5.571 15 C 0.273 3.727 16 N -0.646 5.646 17 C 0.067 3.933 18 C -0.188 4.188 19 C -0.171 4.171 20 S 0.228 5.772 21 C 0.075 3.925 22 C -0.130 4.130 23 C -0.175 4.175 24 H 0.276 0.724 25 H 0.173 0.827 26 H 0.426 0.574 27 H 0.120 0.880 28 H 0.103 0.897 29 H 0.108 0.892 30 H 0.114 0.886 31 H 0.110 0.890 32 H 0.107 0.893 33 H 0.075 0.925 34 H 0.110 0.890 35 H 0.137 0.863 36 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.951 -12.810 8.744 18.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.509 5.509 2 C -0.184 4.184 3 Si 0.801 3.199 4 H -0.202 1.202 5 H -0.202 1.202 6 H -0.185 1.185 7 C -0.477 4.477 8 H 0.084 0.916 9 N -0.138 5.138 10 C 0.310 3.690 11 O -0.525 6.525 12 C -0.470 4.470 13 C -0.013 4.013 14 N -0.296 5.296 15 C -0.094 4.094 16 N -0.283 5.283 17 C -0.041 4.041 18 C -0.227 4.227 19 C -0.210 4.210 20 S 0.485 5.515 21 C -0.032 4.032 22 C -0.168 4.168 23 C -0.215 4.215 24 H 0.086 0.914 25 H 0.190 0.810 26 H 0.266 0.734 27 H 0.138 0.862 28 H 0.121 0.879 29 H 0.126 0.874 30 H 0.132 0.868 31 H 0.128 0.872 32 H 0.125 0.875 33 H 0.094 0.906 34 H 0.129 0.871 35 H 0.154 0.846 36 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -11.326 -12.698 8.833 19.171 hybrid contribution 1.307 0.924 -0.942 1.857 sum -10.019 -11.774 7.891 17.357 Atomic orbital electron populations 1.69938 1.06672 1.28833 1.45419 1.25902 0.96134 1.01557 0.94823 0.85122 0.78371 0.77791 0.78568 1.20191 1.20176 1.18494 1.19430 0.94728 0.84682 1.48849 0.91612 1.43093 1.28080 1.05292 1.37375 1.16038 0.86582 0.83609 0.82739 1.90602 1.29862 1.86934 1.45113 1.24386 1.03983 0.98835 1.19770 1.21899 0.98071 0.85463 0.95828 1.66175 1.04797 1.36734 1.21910 1.24768 0.92271 0.97157 0.95183 1.43188 1.20537 1.04312 1.60235 1.21732 0.98189 0.78325 1.05898 1.23544 0.97836 1.03188 0.98153 1.23510 1.02783 1.01094 0.93576 1.84195 1.17613 0.96141 1.53588 1.21178 0.90160 1.07107 0.84771 1.22758 1.02833 0.92622 0.98621 1.23570 1.03918 0.95779 0.98208 0.91425 0.80984 0.73394 0.86219 0.87870 0.87359 0.86790 0.87155 0.87538 0.90611 0.87141 0.84551 0.89959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -44.73 11.32 21.67 0.25 -44.49 16 2 C 0.02 1.09 4.47 84.93 0.38 1.47 16 3 Si 0.98 41.83 29.59 68.60 2.03 43.86 16 4 H -0.28 -12.23 7.11 99.48 0.71 -11.52 16 5 H -0.28 -11.58 7.11 99.48 0.71 -10.87 16 6 H -0.26 -10.31 7.11 99.48 0.71 -9.60 16 7 C -0.35 -20.10 8.67 84.07 0.73 -19.37 16 8 H 0.07 4.12 7.51 -2.91 -0.02 4.10 16 9 N -0.42 -22.50 2.90 -622.82 -1.80 -24.30 16 10 C 0.52 28.15 7.36 85.13 0.63 28.78 16 11 O -0.63 -39.32 16.53 -4.67 -0.08 -39.40 16 12 C -0.34 -15.06 5.98 22.84 0.14 -14.92 16 13 C 0.15 5.97 11.09 84.52 0.94 6.91 16 14 N -0.57 -20.15 9.70 -200.55 -1.94 -22.10 16 15 C 0.27 8.10 8.05 179.43 1.44 9.54 16 16 N -0.65 -13.47 5.69 -330.72 -1.88 -15.35 16 17 C 0.07 1.23 6.53 45.00 0.29 1.53 16 18 C -0.19 -2.49 10.46 30.62 0.32 -2.17 16 19 C -0.17 -2.00 10.46 30.62 0.32 -1.68 16 20 S 0.23 7.29 16.22 -56.49 -0.92 6.38 16 21 C 0.08 3.25 2.23 44.99 0.10 3.35 16 22 C -0.13 -4.96 8.74 30.62 0.27 -4.69 16 23 C -0.17 -5.86 7.64 30.62 0.23 -5.62 16 24 H 0.28 13.15 8.32 -92.71 -0.77 12.37 16 25 H 0.17 6.93 8.04 -2.91 -0.02 6.90 16 26 H 0.43 6.29 8.95 -92.71 -0.83 5.46 16 27 H 0.12 2.73 7.57 -2.39 -0.02 2.72 16 28 H 0.10 1.24 8.14 -2.39 -0.02 1.22 16 29 H 0.11 1.30 8.14 -2.39 -0.02 1.28 16 30 H 0.11 1.11 8.14 -2.39 -0.02 1.09 16 31 H 0.11 1.01 8.14 -2.39 -0.02 0.99 16 32 H 0.11 4.66 7.19 -2.38 -0.02 4.64 16 33 H 0.08 3.20 7.78 -2.38 -0.02 3.19 16 34 H 0.11 3.68 8.14 -2.39 -0.02 3.66 16 35 H 0.14 3.43 7.39 -2.39 -0.02 3.41 16 36 H 0.08 2.96 8.14 -2.39 -0.02 2.94 16 Total: -1.00 -72.02 316.56 1.73 -70.29 By element: Atomic # 1 Polarization: 21.70 SS G_CDS: 0.29 Total: 21.99 kcal Atomic # 6 Polarization: -2.67 SS G_CDS: 5.79 Total: 3.12 kcal Atomic # 7 Polarization: -100.86 SS G_CDS: -5.38 Total: -106.24 kcal Atomic # 8 Polarization: -39.32 SS G_CDS: -0.08 Total: -39.40 kcal Atomic # 14 Polarization: 41.83 SS G_CDS: 2.03 Total: 43.86 kcal Atomic # 16 Polarization: 7.29 SS G_CDS: -0.92 Total: 6.38 kcal Total: -72.02 1.73 -70.29 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000900359750.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.265 kcal (2) G-P(sol) polarization free energy of solvation -72.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.245 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.293 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds