Wall clock time and date at job start Tue Mar 31 2020 07:30:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50694 * 120.00202 * 2 1 4 4 N 1.46506 * 109.47108 * 125.00393 * 3 2 1 5 5 C 1.37816 * 120.00206 * 179.72721 * 4 3 2 6 6 N 1.30253 * 124.73192 * 359.97438 * 5 4 3 7 7 C 1.30850 * 117.26806 * 179.76662 * 6 5 4 8 8 C 1.36860 * 114.00476 * 0.51530 * 7 6 5 9 9 C 1.41841 * 126.11606 * 179.71108 * 8 7 6 10 10 O 1.21796 * 120.00296 * 6.58965 * 9 8 7 11 11 N 1.34776 * 119.99770 * 186.59107 * 9 8 7 12 12 C 1.36923 * 119.99971 * 184.99432 * 11 9 8 13 13 H 1.08000 * 120.00087 * 330.95171 * 12 11 9 14 14 C 1.38970 * 120.00216 * 150.95333 * 12 11 9 15 15 N 1.31428 * 119.99633 * 343.84331 * 14 12 11 16 16 Si 1.86800 * 120.00146 * 163.83710 * 14 12 11 17 17 H 1.48501 * 109.46985 * 0.02562 * 16 14 12 18 18 H 1.48506 * 109.46866 * 120.00258 * 16 14 12 19 19 H 1.48495 * 109.47252 * 240.00305 * 16 14 12 20 20 C 1.46494 * 120.00272 * 4.99586 * 11 9 8 21 21 C 1.53000 * 117.50116 * 135.51455 * 20 11 9 22 22 C 1.53003 * 117.49901 * 66.85385 * 20 11 9 23 23 S 1.70910 * 124.73486 * 180.27441 * 5 4 3 24 24 H 1.07997 * 119.99701 * 359.97438 * 1 2 3 25 25 H 1.08005 * 120.00072 * 180.02562 * 1 2 3 26 26 H 1.08004 * 119.99869 * 180.02562 * 2 1 3 27 27 H 1.09003 * 109.47003 * 5.00744 * 3 2 1 28 28 H 1.08995 * 109.47478 * 244.99856 * 3 2 1 29 29 H 0.97006 * 119.99738 * 359.97438 * 4 3 2 30 30 H 1.08009 * 122.99571 * 180.22393 * 7 6 5 31 31 H 0.97002 * 119.99549 * 185.04471 * 15 14 12 32 32 H 1.08998 * 115.55169 * 281.18984 * 20 11 9 33 33 H 1.09000 * 117.49753 * 0.02562 * 21 20 11 34 34 H 1.09005 * 117.49922 * 145.02006 * 21 20 11 35 35 H 1.08999 * 117.49850 * 214.97681 * 22 20 11 36 36 H 1.09002 * 117.49750 * 0.02562 * 22 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 7 2.9939 1.3317 1.1314 5 6 3.8006 2.4305 1.3345 6 7 3.8121 3.4923 0.5800 7 6 4.6353 4.4540 0.9111 8 6 5.3865 4.1858 2.0232 9 6 6.3585 5.0415 2.6019 10 8 6.5024 6.1742 2.1781 11 7 7.1229 4.6010 3.6208 12 6 7.9888 5.4572 4.2468 13 1 8.4197 6.2838 3.7014 14 6 8.3134 5.2625 5.5840 15 7 7.5724 4.4762 6.3322 16 14 9.8029 6.1184 6.3177 17 1 10.4642 6.9424 5.2743 18 1 9.3698 6.9924 7.4375 19 1 10.7584 5.1010 6.8249 20 6 7.0273 3.2063 4.0586 21 6 8.3350 2.4603 4.3315 22 6 7.5082 2.1264 3.0872 23 16 4.9306 2.5872 2.6071 24 1 -0.5399 0.9353 0.0004 25 1 -0.5400 -0.9353 0.0004 26 1 1.8500 -0.9354 -0.0004 27 1 1.3586 2.1316 0.0897 28 1 2.6214 1.4025 -0.9313 29 1 3.0447 0.5745 1.7356 30 1 4.7181 5.3753 0.3535 31 1 7.7548 4.3973 7.2817 32 1 6.1715 2.9695 4.6906 33 1 9.2664 3.0074 4.1857 34 1 8.3393 1.7325 5.1430 35 1 6.9691 1.1791 3.0806 36 1 7.8961 2.4538 2.1226 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000900360381.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:30:52 Heat of formation + Delta-G solvation = 79.619675 kcal Electronic energy + Delta-G solvation = -20938.429633 eV Core-core repulsion = 17744.794195 eV Total energy + Delta-G solvation = -3193.635438 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 293.094 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.35388 -38.68415 -36.61816 -35.96840 -33.32911 -33.03371 -31.23368 -29.10809 -26.66237 -25.28704 -23.65299 -22.00446 -21.60063 -20.92284 -20.21786 -18.70262 -17.95444 -16.99914 -16.36319 -15.65186 -15.43969 -15.26009 -14.84837 -14.42182 -14.20434 -13.93473 -13.54046 -13.46000 -13.08730 -12.96718 -12.49149 -12.01828 -11.41752 -11.34815 -11.16123 -11.05728 -10.65951 -10.61625 -10.35389 -10.16948 -10.05907 -9.79743 -9.67655 -9.15301 -8.77668 -8.48432 -8.41521 -7.73542 -7.21877 -6.39825 -3.90119 1.18393 1.55294 1.95049 2.32781 3.11938 3.23075 3.29784 3.32309 3.52823 4.07572 4.35621 4.53903 4.54125 4.75305 4.81947 5.09710 5.12895 5.38084 5.55446 5.61070 5.61633 5.75548 5.88725 6.09377 6.17940 6.21288 6.22776 6.33659 6.52736 6.59886 6.80075 6.98050 7.13894 7.26412 7.53634 8.11364 8.39963 8.47085 9.13309 9.33066 9.93834 10.67039 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.032767 B = 0.004157 C = 0.003878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 854.323427 B = 6733.504245 C = 7218.358964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.175 4.175 3 C 0.162 3.838 4 N -0.695 5.695 5 C 0.254 3.746 6 N -0.555 5.555 7 C 0.127 3.873 8 C -0.287 4.287 9 C 0.529 3.471 10 O -0.581 6.581 11 N -0.411 5.411 12 C -0.307 4.307 13 H 0.100 0.900 14 C 0.043 3.957 15 N -0.861 5.861 16 Si 0.919 3.081 17 H -0.267 1.267 18 H -0.281 1.281 19 H -0.279 1.279 20 C 0.103 3.897 21 C -0.131 4.131 22 C -0.211 4.211 23 S 0.173 5.827 24 H 0.100 0.900 25 H 0.102 0.898 26 H 0.114 0.886 27 H 0.068 0.932 28 H 0.072 0.928 29 H 0.411 0.589 30 H 0.178 0.822 31 H 0.269 0.731 32 H 0.113 0.887 33 H 0.096 0.904 34 H 0.089 0.911 35 H 0.096 0.904 36 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.063 -12.633 -6.041 16.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.193 4.193 3 C 0.037 3.963 4 N -0.335 5.335 5 C -0.112 4.112 6 N -0.280 5.280 7 C -0.031 4.031 8 C -0.413 4.413 9 C 0.319 3.681 10 O -0.468 6.468 11 N -0.128 5.128 12 C -0.435 4.435 13 H 0.118 0.882 14 C -0.163 4.163 15 N -0.498 5.498 16 Si 0.746 3.254 17 H -0.191 1.191 18 H -0.207 1.207 19 H -0.205 1.205 20 C -0.006 4.006 21 C -0.169 4.169 22 C -0.251 4.251 23 S 0.429 5.571 24 H 0.119 0.881 25 H 0.120 0.880 26 H 0.132 0.868 27 H 0.086 0.914 28 H 0.090 0.910 29 H 0.247 0.753 30 H 0.195 0.805 31 H 0.079 0.921 32 H 0.130 0.870 33 H 0.115 0.885 34 H 0.107 0.893 35 H 0.114 0.886 36 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -8.158 -12.814 -5.826 16.270 hybrid contribution 0.622 0.764 0.326 1.038 sum -7.536 -12.050 -5.500 15.239 Atomic orbital electron populations 1.23967 0.95797 1.02321 0.98517 1.23060 0.96240 0.98330 1.01681 1.20350 0.91398 0.94924 0.89656 1.43576 1.41414 1.16497 1.31988 1.24561 0.96457 0.91597 0.98584 1.66117 1.27629 1.01519 1.32734 1.21840 0.90578 0.97182 0.93473 1.24783 1.11819 0.98965 1.05766 1.15444 0.82245 0.86267 0.84100 1.90677 1.71609 1.19714 1.64781 1.42986 1.34587 1.06488 1.28789 1.19587 1.20619 1.09835 0.93485 0.88203 1.25333 0.98349 0.96785 0.95860 1.69894 1.36749 1.37077 1.06080 0.85966 0.81291 0.79081 0.79085 1.19093 1.20650 1.20502 1.21112 0.99379 0.81032 0.99047 1.22736 0.95861 1.01525 0.96776 1.23533 1.05460 1.00152 0.95974 1.84709 1.29401 1.15370 1.27635 0.88145 0.88017 0.86804 0.91407 0.90983 0.75304 0.80544 0.92079 0.86975 0.88548 0.89294 0.88592 0.89075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.17 14.32 29.01 0.42 -0.75 16 2 C -0.17 -1.37 9.63 -36.03 -0.35 -1.71 16 3 C 0.16 1.72 6.36 -5.19 -0.03 1.69 16 4 N -0.69 -8.38 5.67 -63.59 -0.36 -8.75 16 5 C 0.25 4.07 8.04 -87.99 -0.71 3.37 16 6 N -0.56 -10.15 10.06 -14.74 -0.15 -10.29 16 7 C 0.13 2.55 11.08 -18.47 -0.20 2.34 16 8 C -0.29 -6.19 5.98 -38.70 -0.23 -6.42 16 9 C 0.53 13.67 7.36 -14.88 -0.11 13.56 16 10 O -0.58 -16.81 16.53 5.10 0.08 -16.73 16 11 N -0.41 -10.55 2.90 -110.86 -0.32 -10.87 16 12 C -0.31 -8.42 8.67 -15.01 -0.13 -8.55 16 13 H 0.10 2.89 7.51 -52.49 -0.39 2.50 16 14 C 0.04 1.09 4.48 -17.45 -0.08 1.02 16 15 N -0.86 -22.10 11.32 55.50 0.63 -21.47 16 16 Si 0.92 20.14 29.59 -169.99 -5.03 15.11 16 17 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 18 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 19 H -0.28 -5.94 7.11 56.52 0.40 -5.53 16 20 C 0.10 2.23 2.23 -67.93 -0.15 2.07 16 21 C -0.13 -2.56 8.74 -26.69 -0.23 -2.79 16 22 C -0.21 -3.73 7.63 -26.69 -0.20 -3.93 16 23 S 0.17 2.94 16.22 -107.50 -1.74 1.19 16 24 H 0.10 0.70 7.84 -52.49 -0.41 0.28 16 25 H 0.10 0.55 8.06 -52.48 -0.42 0.13 16 26 H 0.11 0.75 8.06 -52.48 -0.42 0.33 16 27 H 0.07 0.78 7.79 -51.93 -0.40 0.38 16 28 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 29 H 0.41 3.93 8.59 -40.82 -0.35 3.58 16 30 H 0.18 3.40 8.04 -52.48 -0.42 2.98 16 31 H 0.27 6.52 8.32 -40.82 -0.34 6.18 16 32 H 0.11 2.50 7.19 -51.93 -0.37 2.12 16 33 H 0.10 2.03 7.78 -51.93 -0.40 1.62 16 34 H 0.09 1.59 8.14 -51.93 -0.42 1.16 16 35 H 0.10 1.41 7.39 -51.93 -0.38 1.03 16 36 H 0.09 1.69 8.14 -51.93 -0.42 1.27 16 LS Contribution 319.14 15.07 4.81 4.81 Total: -1.00 -31.44 319.14 -8.49 -39.93 By element: Atomic # 1 Polarization: 11.58 SS G_CDS: -4.39 Total: 7.18 kcal Atomic # 6 Polarization: 1.90 SS G_CDS: -2.02 Total: -0.12 kcal Atomic # 7 Polarization: -51.18 SS G_CDS: -0.20 Total: -51.38 kcal Atomic # 8 Polarization: -16.81 SS G_CDS: 0.08 Total: -16.73 kcal Atomic # 14 Polarization: 20.14 SS G_CDS: -5.03 Total: 15.11 kcal Atomic # 16 Polarization: 2.94 SS G_CDS: -1.74 Total: 1.19 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -31.44 -8.49 -39.93 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000900360381.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.550 kcal (2) G-P(sol) polarization free energy of solvation -31.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.109 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.930 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds