Wall clock time and date at job start Tue Mar 31 2020 07:30:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50694 * 120.00202 * 2 1 4 4 N 1.46506 * 109.47108 * 125.00393 * 3 2 1 5 5 C 1.37816 * 120.00206 * 179.72721 * 4 3 2 6 6 N 1.30253 * 124.73192 * 359.97438 * 5 4 3 7 7 C 1.30850 * 117.26806 * 179.76662 * 6 5 4 8 8 C 1.36860 * 114.00476 * 0.51530 * 7 6 5 9 9 C 1.41841 * 126.11606 * 179.71108 * 8 7 6 10 10 O 1.21796 * 120.00296 * 6.58965 * 9 8 7 11 11 N 1.34776 * 119.99770 * 186.59107 * 9 8 7 12 12 C 1.36923 * 119.99971 * 184.99432 * 11 9 8 13 13 H 1.08000 * 120.00087 * 330.95171 * 12 11 9 14 14 C 1.38970 * 120.00216 * 150.95333 * 12 11 9 15 15 N 1.31428 * 119.99633 * 343.84331 * 14 12 11 16 16 Si 1.86800 * 120.00146 * 163.83710 * 14 12 11 17 17 H 1.48501 * 109.46985 * 0.02562 * 16 14 12 18 18 H 1.48506 * 109.46866 * 120.00258 * 16 14 12 19 19 H 1.48495 * 109.47252 * 240.00305 * 16 14 12 20 20 C 1.46494 * 120.00272 * 4.99586 * 11 9 8 21 21 C 1.53000 * 117.50116 * 135.51455 * 20 11 9 22 22 C 1.53003 * 117.49901 * 66.85385 * 20 11 9 23 23 S 1.70910 * 124.73486 * 180.27441 * 5 4 3 24 24 H 1.07997 * 119.99701 * 359.97438 * 1 2 3 25 25 H 1.08005 * 120.00072 * 180.02562 * 1 2 3 26 26 H 1.08004 * 119.99869 * 180.02562 * 2 1 3 27 27 H 1.09003 * 109.47003 * 5.00744 * 3 2 1 28 28 H 1.08995 * 109.47478 * 244.99856 * 3 2 1 29 29 H 0.97006 * 119.99738 * 359.97438 * 4 3 2 30 30 H 1.08009 * 122.99571 * 180.22393 * 7 6 5 31 31 H 0.97002 * 119.99549 * 185.04471 * 15 14 12 32 32 H 1.08998 * 115.55169 * 281.18984 * 20 11 9 33 33 H 1.09000 * 117.49753 * 0.02562 * 21 20 11 34 34 H 1.09005 * 117.49922 * 145.02006 * 21 20 11 35 35 H 1.08999 * 117.49850 * 214.97681 * 22 20 11 36 36 H 1.09002 * 117.49750 * 0.02562 * 22 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 7 2.9939 1.3317 1.1314 5 6 3.8006 2.4305 1.3345 6 7 3.8121 3.4923 0.5800 7 6 4.6353 4.4540 0.9111 8 6 5.3865 4.1858 2.0232 9 6 6.3585 5.0415 2.6019 10 8 6.5024 6.1742 2.1781 11 7 7.1229 4.6010 3.6208 12 6 7.9888 5.4572 4.2468 13 1 8.4197 6.2838 3.7014 14 6 8.3134 5.2625 5.5840 15 7 7.5724 4.4762 6.3322 16 14 9.8029 6.1184 6.3177 17 1 10.4642 6.9424 5.2743 18 1 9.3698 6.9924 7.4375 19 1 10.7584 5.1010 6.8249 20 6 7.0273 3.2063 4.0586 21 6 8.3350 2.4603 4.3315 22 6 7.5082 2.1264 3.0872 23 16 4.9306 2.5872 2.6071 24 1 -0.5399 0.9353 0.0004 25 1 -0.5400 -0.9353 0.0004 26 1 1.8500 -0.9354 -0.0004 27 1 1.3586 2.1316 0.0897 28 1 2.6214 1.4025 -0.9313 29 1 3.0447 0.5745 1.7356 30 1 4.7181 5.3753 0.3535 31 1 7.7548 4.3973 7.2817 32 1 6.1715 2.9695 4.6906 33 1 9.2664 3.0074 4.1857 34 1 8.3393 1.7325 5.1430 35 1 6.9691 1.1791 3.0806 36 1 7.8961 2.4538 2.1226 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000900360381.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:30:52 Heat of formation + Delta-G solvation = 59.103763 kcal Electronic energy + Delta-G solvation = -20939.319270 eV Core-core repulsion = 17744.794195 eV Total energy + Delta-G solvation = -3194.525075 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 293.094 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.98791 -40.27823 -38.01729 -37.40293 -35.01209 -34.10229 -33.14959 -30.65562 -27.81148 -27.00466 -25.08953 -23.59017 -23.25042 -22.35875 -21.12705 -20.05560 -19.47395 -18.82658 -17.77809 -17.12726 -17.05459 -16.59028 -16.14531 -16.01252 -15.69470 -15.44963 -15.12742 -14.80415 -14.54208 -14.15304 -13.86349 -13.41119 -13.19440 -12.90853 -12.67068 -12.50669 -12.16133 -12.07851 -11.99394 -11.75956 -11.47547 -11.26922 -10.93448 -10.51473 -10.41631 -10.21590 -9.90281 -9.64719 -8.59277 -8.33314 -5.94669 -0.31505 0.24925 0.85330 1.24765 1.37519 1.42324 1.54923 1.77032 2.27153 2.42025 2.52958 2.86736 3.03686 3.21095 3.69227 3.91713 4.04600 4.18088 4.20105 4.27719 4.46531 4.59419 4.61621 4.76647 4.77305 4.99314 5.05153 5.07179 5.26227 5.37059 5.49156 5.65244 5.74974 5.89008 6.10700 6.23039 6.51943 7.03960 7.15745 7.41030 8.00944 8.71524 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.032767 B = 0.004157 C = 0.003878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 854.323427 B = 6733.504245 C = 7218.358964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.182 4.182 3 C 0.159 3.841 4 N -0.671 5.671 5 C 0.270 3.730 6 N -0.573 5.573 7 C 0.148 3.852 8 C -0.344 4.344 9 C 0.519 3.481 10 O -0.635 6.635 11 N -0.423 5.423 12 C -0.348 4.348 13 H 0.066 0.934 14 C 0.020 3.980 15 N -0.873 5.873 16 Si 0.978 3.022 17 H -0.277 1.277 18 H -0.276 1.276 19 H -0.260 1.260 20 C 0.077 3.923 21 C -0.131 4.131 22 C -0.175 4.175 23 S 0.226 5.774 24 H 0.098 0.902 25 H 0.122 0.878 26 H 0.132 0.868 27 H 0.059 0.941 28 H 0.066 0.934 29 H 0.427 0.573 30 H 0.173 0.827 31 H 0.276 0.724 32 H 0.107 0.893 33 H 0.075 0.925 34 H 0.110 0.890 35 H 0.137 0.863 36 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.332 -16.095 -5.774 19.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.201 4.201 3 C 0.034 3.966 4 N -0.311 5.311 5 C -0.097 4.097 6 N -0.299 5.299 7 C -0.012 4.012 8 C -0.471 4.471 9 C 0.311 3.689 10 O -0.525 6.525 11 N -0.140 5.140 12 C -0.476 4.476 13 H 0.084 0.916 14 C -0.185 4.185 15 N -0.508 5.508 16 Si 0.802 3.198 17 H -0.202 1.202 18 H -0.202 1.202 19 H -0.185 1.185 20 C -0.031 4.031 21 C -0.169 4.169 22 C -0.215 4.215 23 S 0.482 5.518 24 H 0.116 0.884 25 H 0.140 0.860 26 H 0.150 0.850 27 H 0.077 0.923 28 H 0.084 0.916 29 H 0.266 0.734 30 H 0.190 0.810 31 H 0.086 0.914 32 H 0.124 0.876 33 H 0.094 0.906 34 H 0.128 0.872 35 H 0.155 0.845 36 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -9.457 -16.384 -5.528 19.708 hybrid contribution 0.776 1.716 0.127 1.887 sum -8.682 -14.668 -5.401 17.880 Atomic orbital electron populations 1.24182 0.95611 1.03256 0.96455 1.22952 0.96371 0.97335 1.03397 1.20471 0.90963 0.96582 0.88577 1.43863 1.39674 1.15360 1.32208 1.24853 0.95657 0.91716 0.97451 1.66209 1.28090 1.02042 1.33550 1.21899 0.89559 0.97277 0.92508 1.24383 1.12879 1.02072 1.07722 1.16033 0.82578 0.86309 0.83978 1.90600 1.73320 1.22176 1.66452 1.43106 1.34183 1.08026 1.28650 1.19421 1.22748 1.10886 0.94568 0.91647 1.25914 1.00140 0.97156 0.95297 1.69943 1.37309 1.37162 1.06429 0.85117 0.78434 0.78415 0.77850 1.20211 1.20170 1.18498 1.21165 1.00405 0.79877 1.01648 1.22756 0.94180 1.01310 0.98612 1.23573 1.03501 0.99872 0.94532 1.84192 1.29083 1.11808 1.26736 0.88414 0.85962 0.85023 0.92255 0.91551 0.73372 0.81032 0.91435 0.87554 0.90638 0.87155 0.84526 0.89984 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.62 14.32 67.78 0.97 -0.65 16 2 C -0.18 -2.18 9.63 25.64 0.25 -1.93 16 3 C 0.16 2.92 6.36 85.63 0.54 3.46 16 4 N -0.67 -13.90 5.67 -355.09 -2.01 -15.92 16 5 C 0.27 8.03 8.04 179.43 1.44 9.47 16 6 N -0.57 -20.31 10.06 -200.54 -2.02 -22.33 16 7 C 0.15 6.01 11.08 84.52 0.94 6.94 16 8 C -0.34 -15.15 5.98 22.84 0.14 -15.01 16 9 C 0.52 28.27 7.36 85.13 0.63 28.89 16 10 O -0.63 -39.44 16.53 -4.66 -0.08 -39.52 16 11 N -0.42 -22.64 2.90 -622.83 -1.80 -24.45 16 12 C -0.35 -20.11 8.67 84.07 0.73 -19.38 16 13 H 0.07 4.11 7.51 -2.91 -0.02 4.09 16 14 C 0.02 1.05 4.48 84.93 0.38 1.43 16 15 N -0.87 -44.81 11.32 21.67 0.25 -44.57 16 16 Si 0.98 41.95 29.59 68.60 2.03 43.98 16 17 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 18 H -0.28 -11.60 7.11 99.48 0.71 -10.89 16 19 H -0.26 -10.33 7.11 99.48 0.71 -9.63 16 20 C 0.08 3.31 2.23 44.99 0.10 3.41 16 21 C -0.13 -4.99 8.74 30.62 0.27 -4.72 16 22 C -0.17 -5.88 7.63 30.62 0.23 -5.65 16 23 S 0.23 7.25 16.22 -56.49 -0.92 6.34 16 24 H 0.10 1.07 7.84 -2.91 -0.02 1.05 16 25 H 0.12 0.81 8.06 -2.91 -0.02 0.79 16 26 H 0.13 1.15 8.06 -2.91 -0.02 1.13 16 27 H 0.06 1.23 7.79 -2.39 -0.02 1.22 16 28 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 29 H 0.43 6.29 8.59 -92.70 -0.80 5.49 16 30 H 0.17 6.94 8.04 -2.91 -0.02 6.92 16 31 H 0.28 13.17 8.32 -92.71 -0.77 12.39 16 32 H 0.11 4.67 7.19 -2.39 -0.02 4.65 16 33 H 0.08 3.20 7.78 -2.39 -0.02 3.18 16 34 H 0.11 3.69 8.14 -2.38 -0.02 3.67 16 35 H 0.14 3.45 7.39 -2.39 -0.02 3.43 16 36 H 0.08 2.96 8.14 -2.39 -0.02 2.94 16 Total: -1.00 -72.37 319.14 2.37 -70.00 By element: Atomic # 1 Polarization: 19.89 SS G_CDS: 0.31 Total: 20.20 kcal Atomic # 6 Polarization: -0.35 SS G_CDS: 6.62 Total: 6.27 kcal Atomic # 7 Polarization: -101.67 SS G_CDS: -5.59 Total: -107.26 kcal Atomic # 8 Polarization: -39.44 SS G_CDS: -0.08 Total: -39.52 kcal Atomic # 14 Polarization: 41.95 SS G_CDS: 2.03 Total: 43.98 kcal Atomic # 16 Polarization: 7.25 SS G_CDS: -0.92 Total: 6.34 kcal Total: -72.37 2.37 -70.00 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000900360381.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.106 kcal (2) G-P(sol) polarization free energy of solvation -72.374 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.002 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds