Wall clock time and date at job start Tue Mar 31 2020 07:27:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 Cl 1.73599 * 120.00094 * 2 1 4 4 C 1.33341 * 119.99491 * 179.97438 * 2 1 3 5 5 C 1.46835 * 120.00204 * 0.02562 * 4 2 1 6 6 O 1.21643 * 120.00085 * 359.97438 * 5 4 2 7 7 N 1.34777 * 119.99929 * 179.97438 * 5 4 2 8 8 C 1.46499 * 120.00195 * 179.97438 * 7 5 4 9 9 H 1.08998 * 109.47123 * 35.00488 * 8 7 5 10 10 C 1.52999 * 109.47233 * 154.99974 * 8 7 5 11 11 C 1.50693 * 109.47451 * 295.00459 * 10 8 7 12 12 H 1.07995 * 120.00015 * 359.97438 * 11 10 8 13 13 C 1.37882 * 119.99962 * 179.97438 * 11 10 8 14 14 N 1.31515 * 119.99551 * 180.02562 * 13 11 10 15 15 Si 1.86795 * 120.00233 * 359.97438 * 13 11 10 16 16 H 1.48503 * 109.47157 * 90.00135 * 15 13 11 17 17 H 1.48500 * 109.47242 * 209.99991 * 15 13 11 18 18 H 1.48502 * 109.47222 * 330.00115 * 15 13 11 19 19 C 1.50697 * 109.47318 * 275.00519 * 8 7 5 20 20 C 1.38234 * 119.99850 * 319.72282 * 19 8 7 21 21 C 1.38240 * 119.99892 * 179.81293 * 20 19 8 22 22 C 1.38232 * 120.00083 * 0.39445 * 21 20 19 23 23 C 1.38239 * 119.99816 * 359.85733 * 22 21 20 24 24 C 1.38233 * 120.00099 * 359.95820 * 23 22 21 25 25 H 1.09001 * 109.46953 * 359.97438 * 1 2 3 26 26 H 1.09000 * 109.47318 * 119.99491 * 1 2 3 27 27 H 1.09000 * 109.47161 * 240.00121 * 1 2 3 28 28 H 1.08001 * 119.99977 * 180.02562 * 4 2 1 29 29 H 0.97000 * 120.00327 * 0.02562 * 7 5 4 30 30 H 1.09005 * 109.46737 * 55.00786 * 10 8 7 31 31 H 1.09001 * 109.46896 * 174.99894 * 10 8 7 32 32 H 0.96998 * 119.99711 * 179.97438 * 14 13 11 33 33 H 1.07994 * 120.00405 * 359.97438 * 20 19 8 34 34 H 1.07997 * 120.00061 * 180.23574 * 21 20 19 35 35 H 1.08000 * 120.00198 * 179.83669 * 22 21 20 36 36 H 1.08001 * 120.00169 * 179.97438 * 23 22 21 37 37 H 1.08003 * 120.00179 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 17 2.3751 1.5034 0.0000 4 6 2.1737 -1.1548 0.0005 5 6 1.4394 -2.4264 0.0005 6 8 0.2230 -2.4264 0.0005 7 7 2.1133 -3.5936 0.0005 8 6 1.3808 -4.8624 0.0011 9 1 0.4699 -4.7563 -0.5881 10 6 2.2577 -5.9579 -0.6086 11 6 2.5141 -5.6462 -2.0605 12 1 2.0933 -4.7560 -2.5042 13 6 3.2859 -6.4975 -2.8225 14 7 3.5101 -6.2252 -4.0895 15 14 4.0143 -8.0369 -2.0550 16 1 3.0609 -9.1651 -2.2081 17 1 5.2913 -8.3722 -2.7347 18 1 4.2698 -7.7971 -0.6119 19 6 1.0228 -5.2351 1.4167 20 6 1.9340 -5.0325 2.4362 21 6 1.6041 -5.3709 3.7353 22 6 0.3662 -5.9194 4.0137 23 6 -0.5431 -6.1268 2.9933 24 6 -0.2147 -5.7850 1.6948 25 1 -0.3633 1.0277 0.0005 26 1 -0.3634 -0.5137 -0.8900 27 1 -0.3633 -0.5138 0.8900 28 1 3.2537 -1.1549 0.0009 29 1 3.0833 -3.5937 0.0009 30 1 3.2063 -6.0035 -0.0737 31 1 1.7483 -6.9181 -0.5276 32 1 4.0534 -6.8239 -4.6254 33 1 2.9025 -4.6075 2.2183 34 1 2.3146 -5.2090 4.5325 35 1 0.1095 -6.1862 5.0282 36 1 -1.5101 -6.5558 3.2106 37 1 -0.9249 -5.9474 0.8975 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000901171484.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:27:51 Heat of formation + Delta-G solvation = -11.261833 kcal Electronic energy + Delta-G solvation = -20782.662794 eV Core-core repulsion = 17550.749981 eV Total energy + Delta-G solvation = -3231.912813 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 293.092 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.84849 -38.67074 -36.93613 -35.49607 -33.40375 -32.71320 -31.36390 -30.58970 -29.38337 -27.75921 -25.11098 -22.50728 -22.08417 -21.80148 -19.88571 -19.26265 -17.16720 -16.87921 -16.44790 -15.61239 -15.13291 -14.93669 -14.52140 -14.32250 -14.20102 -13.46080 -13.35577 -13.11758 -12.85851 -12.77809 -12.62835 -12.42249 -11.87110 -11.82152 -11.77415 -11.38151 -11.13311 -10.98842 -10.76565 -10.65439 -10.20624 -9.88228 -9.40643 -9.32991 -9.18915 -8.66843 -8.63345 -8.48473 -8.33442 -6.13782 -4.13927 1.25076 1.64078 1.67731 1.93715 3.23689 3.32265 3.34005 3.54458 3.78731 4.13921 4.35529 4.75006 5.13337 5.15560 5.19081 5.22454 5.29469 5.39295 5.42359 5.78173 5.78947 5.79988 5.85522 6.01705 6.09168 6.20482 6.27162 6.30927 6.39168 6.70067 6.73400 6.75716 6.89737 7.01642 7.26882 7.29588 7.61815 8.01968 8.40695 8.64511 8.91767 9.46840 10.98938 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.010246 B = 0.005723 C = 0.004042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2732.176264 B = 4891.116574 C = 6925.160527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C 0.005 3.995 3 Cl -0.077 7.077 4 C -0.202 4.202 5 C 0.549 3.451 6 O -0.544 6.544 7 N -0.692 5.692 8 C 0.195 3.805 9 H 0.093 0.907 10 C -0.014 4.014 11 C -0.522 4.522 12 H 0.076 0.924 13 C 0.071 3.929 14 N -0.897 5.897 15 Si 0.875 3.125 16 H -0.276 1.276 17 H -0.287 1.287 18 H -0.265 1.265 19 C -0.077 4.077 20 C -0.109 4.109 21 C -0.125 4.125 22 C -0.133 4.133 23 C -0.122 4.122 24 C -0.107 4.107 25 H 0.060 0.940 26 H 0.096 0.904 27 H 0.094 0.906 28 H 0.136 0.864 29 H 0.403 0.597 30 H 0.024 0.976 31 H 0.030 0.970 32 H 0.264 0.736 33 H 0.117 0.883 34 H 0.115 0.885 35 H 0.114 0.886 36 H 0.117 0.883 37 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.262 7.932 13.462 15.962 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.024 4.024 3 Cl -0.049 7.049 4 C -0.224 4.224 5 C 0.337 3.663 6 O -0.425 6.425 7 N -0.340 5.340 8 C 0.091 3.909 9 H 0.111 0.889 10 C -0.052 4.052 11 C -0.560 4.560 12 H 0.094 0.906 13 C -0.131 4.131 14 N -0.535 5.535 15 Si 0.702 3.298 16 H -0.202 1.202 17 H -0.213 1.213 18 H -0.190 1.190 19 C -0.078 4.078 20 C -0.127 4.127 21 C -0.143 4.143 22 C -0.151 4.151 23 C -0.140 4.140 24 C -0.125 4.125 25 H 0.078 0.922 26 H 0.114 0.886 27 H 0.112 0.888 28 H 0.154 0.846 29 H 0.238 0.762 30 H 0.042 0.958 31 H 0.048 0.952 32 H 0.074 0.926 33 H 0.135 0.865 34 H 0.133 0.867 35 H 0.132 0.868 36 H 0.135 0.865 37 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -3.941 7.970 13.276 15.978 hybrid contribution 1.254 -0.799 0.216 1.503 sum -2.686 7.171 13.492 15.514 Atomic orbital electron populations 1.21190 0.87607 1.01940 1.05603 1.24035 0.95593 0.85993 0.96744 1.98380 1.76932 1.33314 1.96235 1.22709 1.01108 0.91816 1.06759 1.17966 0.87293 0.83939 0.77111 1.90763 1.13431 1.87620 1.50660 1.45750 1.10402 1.04968 1.72852 1.19970 0.97159 0.83562 0.90207 0.88853 1.19877 0.94702 0.93345 0.97242 1.21006 1.32237 1.10294 0.92437 0.90593 1.24987 0.95791 0.97668 0.94636 1.69905 1.39063 1.37840 1.06708 0.86857 0.78944 0.83999 0.79957 1.20184 1.21334 1.18982 1.20563 0.93737 0.97002 0.96510 1.20937 0.99246 1.00079 0.92469 1.21058 0.96793 0.99955 0.96495 1.21024 0.94441 1.00887 0.98759 1.21065 0.99293 1.00649 0.93043 1.21041 0.96186 0.98686 0.96625 0.92153 0.88571 0.88811 0.84614 0.76245 0.95825 0.95200 0.92605 0.86482 0.86656 0.86754 0.86492 0.85995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.36 8.38 36.01 0.30 -1.06 16 2 C 0.00 0.06 6.57 -36.02 -0.24 -0.17 16 3 Cl -0.08 -0.89 28.94 -51.86 -1.50 -2.39 16 4 C -0.20 -2.83 9.76 -37.82 -0.37 -3.20 16 5 C 0.55 9.35 7.68 -12.78 -0.10 9.25 16 6 O -0.54 -10.43 12.74 5.24 0.07 -10.36 16 7 N -0.69 -11.95 4.04 -56.20 -0.23 -12.17 16 8 C 0.20 3.73 2.11 -69.08 -0.15 3.58 16 9 H 0.09 1.97 7.44 -51.93 -0.39 1.59 16 10 C -0.01 -0.31 3.56 -27.89 -0.10 -0.41 16 11 C -0.52 -13.77 9.39 -34.44 -0.32 -14.09 16 12 H 0.08 2.21 7.99 -52.49 -0.42 1.79 16 13 C 0.07 1.96 5.47 -17.82 -0.10 1.87 16 14 N -0.90 -26.54 13.96 55.43 0.77 -25.77 16 15 Si 0.88 20.64 27.47 -169.99 -4.67 15.97 16 16 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 17 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 18 H -0.27 -5.96 6.54 56.52 0.37 -5.60 16 19 C -0.08 -1.32 4.91 -104.63 -0.51 -1.83 16 20 C -0.11 -1.69 9.32 -39.58 -0.37 -2.06 16 21 C -0.12 -1.70 10.05 -39.58 -0.40 -2.10 16 22 C -0.13 -1.74 10.05 -39.58 -0.40 -2.13 16 23 C -0.12 -1.69 10.05 -39.58 -0.40 -2.09 16 24 C -0.11 -1.71 9.67 -39.58 -0.38 -2.09 16 25 H 0.06 0.63 8.05 -51.93 -0.42 0.21 16 26 H 0.10 1.37 7.22 -51.93 -0.38 1.00 16 27 H 0.09 1.27 7.22 -51.93 -0.38 0.90 16 28 H 0.14 1.63 8.06 -52.49 -0.42 1.21 16 29 H 0.40 6.35 8.58 -40.82 -0.35 6.00 16 30 H 0.02 0.51 7.20 -51.93 -0.37 0.13 16 31 H 0.03 0.66 7.57 -51.93 -0.39 0.27 16 32 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 33 H 0.12 1.68 7.73 -52.49 -0.41 1.27 16 34 H 0.12 1.28 8.06 -52.49 -0.42 0.86 16 35 H 0.11 1.18 8.06 -52.49 -0.42 0.76 16 36 H 0.12 1.32 8.06 -52.49 -0.42 0.89 16 37 H 0.12 1.86 8.04 -52.48 -0.42 1.44 16 LS Contribution 332.45 15.07 5.01 5.01 Total: -1.00 -30.11 332.45 -8.85 -38.96 By element: Atomic # 1 Polarization: 12.04 SS G_CDS: -4.78 Total: 7.26 kcal Atomic # 6 Polarization: -12.99 SS G_CDS: -3.53 Total: -16.52 kcal Atomic # 7 Polarization: -38.49 SS G_CDS: 0.55 Total: -37.94 kcal Atomic # 8 Polarization: -10.43 SS G_CDS: 0.07 Total: -10.36 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -4.67 Total: 15.97 kcal Atomic # 17 Polarization: -0.89 SS G_CDS: -1.50 Total: -2.39 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -30.11 -8.85 -38.96 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000901171484.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.702 kcal (2) G-P(sol) polarization free energy of solvation -30.114 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.964 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds