Wall clock time and date at job start Tue Mar 31 2020 07:27:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 Cl 1.73599 * 120.00094 * 2 1 4 4 C 1.33341 * 119.99491 * 179.97438 * 2 1 3 5 5 C 1.46835 * 120.00204 * 0.02562 * 4 2 1 6 6 O 1.21643 * 120.00085 * 359.97438 * 5 4 2 7 7 N 1.34777 * 119.99929 * 179.97438 * 5 4 2 8 8 C 1.46499 * 120.00195 * 179.97438 * 7 5 4 9 9 H 1.08998 * 109.47123 * 35.00488 * 8 7 5 10 10 C 1.52999 * 109.47233 * 154.99974 * 8 7 5 11 11 C 1.50693 * 109.47451 * 295.00459 * 10 8 7 12 12 H 1.07995 * 120.00015 * 359.97438 * 11 10 8 13 13 C 1.37882 * 119.99962 * 179.97438 * 11 10 8 14 14 N 1.31515 * 119.99551 * 180.02562 * 13 11 10 15 15 Si 1.86795 * 120.00233 * 359.97438 * 13 11 10 16 16 H 1.48503 * 109.47157 * 90.00135 * 15 13 11 17 17 H 1.48500 * 109.47242 * 209.99991 * 15 13 11 18 18 H 1.48502 * 109.47222 * 330.00115 * 15 13 11 19 19 C 1.50697 * 109.47318 * 275.00519 * 8 7 5 20 20 C 1.38234 * 119.99850 * 319.72282 * 19 8 7 21 21 C 1.38240 * 119.99892 * 179.81293 * 20 19 8 22 22 C 1.38232 * 120.00083 * 0.39445 * 21 20 19 23 23 C 1.38239 * 119.99816 * 359.85733 * 22 21 20 24 24 C 1.38233 * 120.00099 * 359.95820 * 23 22 21 25 25 H 1.09001 * 109.46953 * 359.97438 * 1 2 3 26 26 H 1.09000 * 109.47318 * 119.99491 * 1 2 3 27 27 H 1.09000 * 109.47161 * 240.00121 * 1 2 3 28 28 H 1.08001 * 119.99977 * 180.02562 * 4 2 1 29 29 H 0.97000 * 120.00327 * 0.02562 * 7 5 4 30 30 H 1.09005 * 109.46737 * 55.00786 * 10 8 7 31 31 H 1.09001 * 109.46896 * 174.99894 * 10 8 7 32 32 H 0.96998 * 119.99711 * 179.97438 * 14 13 11 33 33 H 1.07994 * 120.00405 * 359.97438 * 20 19 8 34 34 H 1.07997 * 120.00061 * 180.23574 * 21 20 19 35 35 H 1.08000 * 120.00198 * 179.83669 * 22 21 20 36 36 H 1.08001 * 120.00169 * 179.97438 * 23 22 21 37 37 H 1.08003 * 120.00179 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 17 2.3751 1.5034 0.0000 4 6 2.1737 -1.1548 0.0005 5 6 1.4394 -2.4264 0.0005 6 8 0.2230 -2.4264 0.0005 7 7 2.1133 -3.5936 0.0005 8 6 1.3808 -4.8624 0.0011 9 1 0.4699 -4.7563 -0.5881 10 6 2.2577 -5.9579 -0.6086 11 6 2.5141 -5.6462 -2.0605 12 1 2.0933 -4.7560 -2.5042 13 6 3.2859 -6.4975 -2.8225 14 7 3.5101 -6.2252 -4.0895 15 14 4.0143 -8.0369 -2.0550 16 1 3.0609 -9.1651 -2.2081 17 1 5.2913 -8.3722 -2.7347 18 1 4.2698 -7.7971 -0.6119 19 6 1.0228 -5.2351 1.4167 20 6 1.9340 -5.0325 2.4362 21 6 1.6041 -5.3709 3.7353 22 6 0.3662 -5.9194 4.0137 23 6 -0.5431 -6.1268 2.9933 24 6 -0.2147 -5.7850 1.6948 25 1 -0.3633 1.0277 0.0005 26 1 -0.3634 -0.5137 -0.8900 27 1 -0.3633 -0.5138 0.8900 28 1 3.2537 -1.1549 0.0009 29 1 3.0833 -3.5937 0.0009 30 1 3.2063 -6.0035 -0.0737 31 1 1.7483 -6.9181 -0.5276 32 1 4.0534 -6.8239 -4.6254 33 1 2.9025 -4.6075 2.2183 34 1 2.3146 -5.2090 4.5325 35 1 0.1095 -6.1862 5.0282 36 1 -1.5101 -6.5558 3.2106 37 1 -0.9249 -5.9474 0.8975 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000901171484.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:27:50 Heat of formation + Delta-G solvation = -27.984372 kcal Electronic energy + Delta-G solvation = -20783.387938 eV Core-core repulsion = 17550.749981 eV Total energy + Delta-G solvation = -3232.637957 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 293.092 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.18102 -39.85777 -37.99472 -36.93428 -34.73991 -34.53173 -32.75112 -31.69546 -30.97392 -28.94941 -26.71022 -23.68952 -23.57365 -23.12601 -21.28071 -20.56850 -19.04905 -18.12825 -17.75329 -16.96753 -16.42965 -16.17726 -16.08618 -15.71766 -15.43514 -14.90503 -14.60645 -14.49922 -14.17817 -14.05204 -13.98207 -13.79042 -13.52427 -13.03615 -12.84806 -12.84219 -12.53614 -12.40500 -11.99334 -11.92227 -11.72922 -11.72663 -11.41070 -10.81156 -10.69612 -10.35690 -9.87171 -9.74341 -9.53240 -8.27534 -6.32235 0.09992 0.50119 0.56786 0.85729 1.37824 1.39159 1.49796 2.22906 2.36081 2.47778 2.98040 3.08757 3.67835 3.91843 4.02808 4.07297 4.21760 4.33649 4.36357 4.40756 4.59499 4.69515 4.73610 4.76886 4.82418 5.02041 5.02577 5.15276 5.19407 5.21358 5.30229 5.54944 5.57990 5.65771 5.66394 5.87784 6.18635 6.26318 6.66070 6.75701 7.29470 7.32355 8.88726 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.010246 B = 0.005723 C = 0.004042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2732.176264 B = 4891.116574 C = 6925.160527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C 0.015 3.985 3 Cl -0.055 7.055 4 C -0.213 4.213 5 C 0.544 3.456 6 O -0.572 6.572 7 N -0.692 5.692 8 C 0.206 3.794 9 H 0.059 0.941 10 C -0.005 4.005 11 C -0.519 4.519 12 H 0.033 0.967 13 C 0.012 3.988 14 N -0.948 5.948 15 Si 0.944 3.056 16 H -0.273 1.273 17 H -0.286 1.286 18 H -0.242 1.242 19 C -0.099 4.099 20 C -0.120 4.120 21 C -0.124 4.124 22 C -0.127 4.127 23 C -0.123 4.123 24 C -0.129 4.129 25 H 0.085 0.915 26 H 0.077 0.923 27 H 0.085 0.915 28 H 0.157 0.843 29 H 0.409 0.591 30 H 0.037 0.963 31 H 0.029 0.971 32 H 0.265 0.735 33 H 0.124 0.876 34 H 0.146 0.854 35 H 0.149 0.851 36 H 0.143 0.857 37 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.566 7.723 16.603 18.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.014 4.014 3 Cl -0.026 7.026 4 C -0.235 4.235 5 C 0.333 3.667 6 O -0.455 6.455 7 N -0.340 5.340 8 C 0.101 3.899 9 H 0.078 0.922 10 C -0.043 4.043 11 C -0.557 4.557 12 H 0.051 0.949 13 C -0.186 4.186 14 N -0.588 5.588 15 Si 0.768 3.232 16 H -0.198 1.198 17 H -0.212 1.212 18 H -0.165 1.165 19 C -0.100 4.100 20 C -0.138 4.138 21 C -0.142 4.142 22 C -0.145 4.145 23 C -0.141 4.141 24 C -0.148 4.148 25 H 0.104 0.896 26 H 0.096 0.904 27 H 0.103 0.897 28 H 0.174 0.826 29 H 0.245 0.755 30 H 0.055 0.945 31 H 0.047 0.953 32 H 0.074 0.926 33 H 0.142 0.858 34 H 0.163 0.837 35 H 0.167 0.833 36 H 0.160 0.840 37 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -3.239 7.776 16.438 18.471 hybrid contribution 0.951 -0.607 -0.760 1.360 sum -2.288 7.170 15.678 17.391 Atomic orbital electron populations 1.21124 0.87575 1.03118 1.04242 1.24103 0.95815 0.86603 0.94852 1.98390 1.76505 1.31723 1.95975 1.22640 1.01928 0.90557 1.08374 1.18430 0.87170 0.84734 0.76353 1.90745 1.14713 1.88075 1.51951 1.45703 1.10679 1.04695 1.72950 1.19555 0.95243 0.83530 0.91534 0.92232 1.19737 0.95782 0.94315 0.94461 1.21201 1.31142 1.08569 0.94778 0.94904 1.25890 0.96442 1.01288 0.94955 1.70063 1.40618 1.39568 1.08554 0.85758 0.77897 0.79419 0.80159 1.19799 1.21197 1.16520 1.20370 0.95099 0.99166 0.95411 1.21101 0.99274 1.00426 0.93036 1.21434 0.97677 0.98819 0.96279 1.21474 0.93731 0.99205 1.00117 1.21382 1.00678 0.99950 0.92106 1.21177 0.96000 0.99686 0.97908 0.89634 0.90435 0.89687 0.82572 0.75469 0.94503 0.95261 0.92566 0.85820 0.83674 0.83310 0.83967 0.86762 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.63 8.38 71.24 0.60 -2.03 16 2 C 0.01 0.38 6.57 24.58 0.16 0.54 16 3 Cl -0.05 -1.17 28.94 -2.72 -0.08 -1.25 16 4 C -0.21 -5.91 9.76 23.41 0.23 -5.68 16 5 C 0.54 19.08 7.68 86.49 0.66 19.74 16 6 O -0.57 -22.94 12.74 -4.17 -0.05 -22.99 16 7 N -0.69 -24.59 4.04 -449.97 -1.82 -26.41 16 8 C 0.21 8.16 2.11 44.24 0.09 8.26 16 9 H 0.06 2.71 7.44 -2.39 -0.02 2.69 16 10 C -0.01 -0.23 3.56 29.85 0.11 -0.13 16 11 C -0.52 -28.36 9.39 25.60 0.24 -28.12 16 12 H 0.03 2.03 7.99 -2.91 -0.02 2.00 16 13 C 0.01 0.65 5.47 84.66 0.46 1.11 16 14 N -0.95 -57.91 13.96 21.45 0.30 -57.61 16 15 Si 0.94 42.50 27.47 68.60 1.88 44.38 16 16 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 17 H -0.29 -12.76 7.11 99.48 0.71 -12.05 16 18 H -0.24 -9.90 6.54 99.48 0.65 -9.25 16 19 C -0.10 -3.39 4.91 -19.87 -0.10 -3.49 16 20 C -0.12 -3.51 9.32 22.27 0.21 -3.31 16 21 C -0.12 -2.97 10.05 22.27 0.22 -2.74 16 22 C -0.13 -2.85 10.05 22.27 0.22 -2.62 16 23 C -0.12 -3.12 10.05 22.27 0.22 -2.90 16 24 C -0.13 -4.11 9.67 22.27 0.22 -3.89 16 25 H 0.08 1.68 8.05 -2.39 -0.02 1.66 16 26 H 0.08 2.29 7.22 -2.39 -0.02 2.27 16 27 H 0.08 2.33 7.22 -2.39 -0.02 2.31 16 28 H 0.16 3.59 8.06 -2.91 -0.02 3.56 16 29 H 0.41 13.09 8.58 -92.71 -0.80 12.29 16 30 H 0.04 1.54 7.20 -2.38 -0.02 1.52 16 31 H 0.03 1.30 7.57 -2.39 -0.02 1.28 16 32 H 0.27 15.21 8.31 -92.71 -0.77 14.44 16 33 H 0.12 3.33 7.73 -2.91 -0.02 3.31 16 34 H 0.15 2.56 8.06 -2.91 -0.02 2.54 16 35 H 0.15 2.30 8.06 -2.91 -0.02 2.28 16 36 H 0.14 2.79 8.06 -2.91 -0.02 2.76 16 37 H 0.11 3.65 8.04 -2.91 -0.02 3.62 16 Total: -1.00 -67.26 332.45 4.01 -63.25 By element: Atomic # 1 Polarization: 25.66 SS G_CDS: 0.23 Total: 25.89 kcal Atomic # 6 Polarization: -28.80 SS G_CDS: 3.55 Total: -25.25 kcal Atomic # 7 Polarization: -82.51 SS G_CDS: -1.52 Total: -84.03 kcal Atomic # 8 Polarization: -22.94 SS G_CDS: -0.05 Total: -22.99 kcal Atomic # 14 Polarization: 42.50 SS G_CDS: 1.88 Total: 44.38 kcal Atomic # 17 Polarization: -1.17 SS G_CDS: -0.08 Total: -1.25 kcal Total: -67.26 4.01 -63.25 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000901171484.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.261 kcal (2) G-P(sol) polarization free energy of solvation -67.260 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.999 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.245 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds