Wall clock time and date at job start Tue Mar 31 2020 07:27:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 Cl 1.73591 * 120.00339 * 2 1 4 4 C 1.33347 * 119.99741 * 180.02562 * 2 1 3 5 5 C 1.46837 * 119.99857 * 359.97438 * 4 2 1 6 6 O 1.21643 * 120.00177 * 0.02562 * 5 4 2 7 7 N 1.34777 * 119.99823 * 180.02562 * 5 4 2 8 8 C 1.46494 * 120.00188 * 180.02562 * 7 5 4 9 9 H 1.09000 * 109.47081 * 325.00162 * 8 7 5 10 10 C 1.53001 * 109.47302 * 205.00083 * 8 7 5 11 11 C 1.50701 * 109.47232 * 64.99671 * 10 8 7 12 12 H 1.08001 * 119.99717 * 0.02562 * 11 10 8 13 13 C 1.37876 * 119.99813 * 179.97438 * 11 10 8 14 14 N 1.31510 * 120.00272 * 0.02562 * 13 11 10 15 15 Si 1.86805 * 119.99744 * 180.02562 * 13 11 10 16 16 H 1.48499 * 109.47025 * 60.00075 * 15 13 11 17 17 H 1.48495 * 109.46903 * 180.02562 * 15 13 11 18 18 H 1.48503 * 109.46719 * 300.00202 * 15 13 11 19 19 C 1.50703 * 109.47581 * 84.99858 * 8 7 5 20 20 C 1.38235 * 120.00292 * 220.00303 * 19 8 7 21 21 C 1.38230 * 119.99899 * 179.97438 * 20 19 8 22 22 C 1.38235 * 120.00326 * 359.95697 * 21 20 19 23 23 C 1.38234 * 119.99814 * 359.97438 * 22 21 20 24 24 C 1.38234 * 119.99503 * 39.97596 * 19 8 7 25 25 H 1.08999 * 109.47083 * 240.00098 * 1 2 3 26 26 H 1.08995 * 109.46463 * 359.97438 * 1 2 3 27 27 H 1.08998 * 109.46864 * 119.99830 * 1 2 3 28 28 H 1.07996 * 120.00017 * 179.97438 * 4 2 1 29 29 H 0.97005 * 119.99889 * 0.02562 * 7 5 4 30 30 H 1.09007 * 109.47213 * 184.99910 * 10 8 7 31 31 H 1.08998 * 109.47120 * 304.99384 * 10 8 7 32 32 H 0.97001 * 120.00530 * 179.97438 * 14 13 11 33 33 H 1.08001 * 119.99730 * 359.97438 * 20 19 8 34 34 H 1.08000 * 120.00376 * 179.97438 * 21 20 19 35 35 H 1.08000 * 120.00616 * 179.72578 * 22 21 20 36 36 H 1.08001 * 120.00299 * 179.97438 * 23 22 21 37 37 H 1.07997 * 120.00455 * 0.02562 * 24 19 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 17 2.3751 1.5033 0.0000 4 6 2.1738 -1.1549 -0.0005 5 6 1.4395 -2.4264 -0.0005 6 8 0.2231 -2.4264 -0.0005 7 7 2.1133 -3.5937 -0.0005 8 6 1.3808 -4.8623 -0.0011 9 1 0.4699 -4.7562 0.5880 10 6 2.2578 -5.9579 0.6087 11 6 2.5141 -5.6461 2.0606 12 1 2.0933 -4.7559 2.5042 13 6 3.2850 -6.4980 2.8229 14 7 3.7970 -7.5823 2.2828 15 14 3.6022 -6.1119 4.6229 16 1 2.3095 -6.0496 5.3510 17 1 4.4534 -7.1752 5.2145 18 1 4.2964 -4.8038 4.7336 19 6 1.0229 -5.2352 -1.4167 20 6 -0.2145 -5.7851 -1.6948 21 6 -0.5430 -6.1266 -2.9934 22 6 0.3656 -5.9175 -4.0140 23 6 1.6025 -5.3663 -3.7361 24 6 1.9318 -5.0269 -2.4371 25 1 -0.3633 -0.5138 0.8900 26 1 -0.3632 1.0277 0.0005 27 1 -0.3633 -0.5138 -0.8900 28 1 3.2537 -1.1549 -0.0009 29 1 3.0834 -3.5937 -0.0001 30 1 1.7484 -6.9182 0.5276 31 1 3.2064 -6.0036 0.0738 32 1 4.3397 -8.1814 2.8189 33 1 -0.9246 -5.9478 -0.8975 34 1 -1.5096 -6.5565 -3.2107 35 1 0.1107 -6.1884 -5.0279 36 1 2.3125 -5.2033 -4.5334 37 1 2.8986 -4.5973 -2.2199 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000901171485.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:27:54 Heat of formation + Delta-G solvation = -15.347048 kcal Electronic energy + Delta-G solvation = -20742.731616 eV Core-core repulsion = 17510.641655 eV Total energy + Delta-G solvation = -3232.089962 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 293.092 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.78815 -38.59349 -36.94809 -35.40300 -33.41231 -32.77803 -31.23525 -30.48303 -28.93987 -27.65851 -24.98196 -22.43674 -22.23234 -21.88263 -19.84093 -19.26222 -16.91340 -16.85316 -16.17215 -15.54863 -15.05094 -14.91478 -14.51856 -14.47226 -14.16525 -13.38221 -13.33764 -13.01362 -12.85807 -12.64363 -12.51500 -12.12189 -11.84252 -11.83889 -11.57374 -11.15910 -11.02647 -10.92668 -10.73819 -10.64898 -10.46976 -9.80534 -9.39699 -9.29485 -9.19959 -8.56087 -8.47638 -8.41128 -8.20473 -6.10959 -4.14788 1.23802 1.75215 1.78652 1.92517 3.27586 3.32806 3.35604 3.55321 3.83989 4.23801 4.38336 4.73599 5.21875 5.25332 5.25609 5.28296 5.35816 5.39567 5.52603 5.77423 5.85247 5.89316 5.92087 6.04965 6.16218 6.28541 6.33818 6.42374 6.55198 6.83048 6.83555 6.86696 7.08690 7.38605 7.46592 7.58823 7.85260 8.06981 8.23266 8.67294 8.90811 9.50486 10.99448 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.008712 B = 0.006227 C = 0.003970 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3213.055711 B = 4495.826487 C = 7051.686461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C 0.004 3.996 3 Cl -0.078 7.078 4 C -0.202 4.202 5 C 0.546 3.454 6 O -0.546 6.546 7 N -0.691 5.691 8 C 0.185 3.815 9 H 0.088 0.912 10 C 0.024 3.976 11 C -0.522 4.522 12 H 0.057 0.943 13 C 0.061 3.939 14 N -0.892 5.892 15 Si 0.892 3.108 16 H -0.276 1.276 17 H -0.287 1.287 18 H -0.277 1.277 19 C -0.071 4.071 20 C -0.108 4.108 21 C -0.123 4.123 22 C -0.135 4.135 23 C -0.125 4.125 24 C -0.108 4.108 25 H 0.095 0.905 26 H 0.059 0.941 27 H 0.094 0.906 28 H 0.136 0.864 29 H 0.403 0.597 30 H 0.035 0.965 31 H 0.025 0.975 32 H 0.263 0.737 33 H 0.120 0.880 34 H 0.116 0.884 35 H 0.113 0.887 36 H 0.115 0.885 37 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.743 10.805 -9.168 14.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.025 4.025 3 Cl -0.049 7.049 4 C -0.224 4.224 5 C 0.334 3.666 6 O -0.426 6.426 7 N -0.339 5.339 8 C 0.081 3.919 9 H 0.106 0.894 10 C -0.013 4.013 11 C -0.560 4.560 12 H 0.076 0.924 13 C -0.141 4.141 14 N -0.530 5.530 15 Si 0.720 3.280 16 H -0.202 1.202 17 H -0.213 1.213 18 H -0.202 1.202 19 C -0.073 4.073 20 C -0.126 4.126 21 C -0.141 4.141 22 C -0.153 4.153 23 C -0.143 4.143 24 C -0.126 4.126 25 H 0.114 0.886 26 H 0.078 0.922 27 H 0.112 0.888 28 H 0.154 0.846 29 H 0.237 0.763 30 H 0.053 0.947 31 H 0.043 0.957 32 H 0.072 0.928 33 H 0.138 0.862 34 H 0.134 0.866 35 H 0.132 0.868 36 H 0.133 0.867 37 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -4.404 10.741 -9.110 14.757 hybrid contribution 1.054 0.168 1.015 1.473 sum -3.349 10.909 -8.095 13.991 Atomic orbital electron populations 1.21184 0.87605 1.01898 1.05610 1.24042 0.95595 0.85971 0.96886 1.98379 1.76936 1.33369 1.96248 1.22747 1.01105 0.91898 1.06659 1.17994 0.87330 0.83986 0.77315 1.90761 1.13430 1.87639 1.50813 1.45847 1.10450 1.05079 1.72513 1.20267 0.97342 0.83945 0.90361 0.89379 1.19393 0.94244 0.92203 0.95509 1.21092 1.31780 1.08369 0.94785 0.92430 1.24981 0.95701 0.94951 0.98434 1.69943 1.34057 1.12528 1.36495 0.86658 0.78306 0.77931 0.85135 1.20196 1.21289 1.20229 1.20537 0.93558 0.96696 0.96478 1.21011 0.96227 0.98863 0.96522 1.21040 0.99272 1.00700 0.93074 1.20999 0.94515 1.01069 0.98700 1.21046 0.96731 1.00008 0.96515 1.20916 0.99175 1.00097 0.92422 0.88644 0.92185 0.88763 0.84645 0.76262 0.94705 0.95703 0.92780 0.86171 0.86610 0.86844 0.86735 0.86558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.34 8.38 36.01 0.30 -1.03 16 2 C 0.00 0.05 6.57 -36.01 -0.24 -0.19 16 3 Cl -0.08 -0.89 28.94 -51.86 -1.50 -2.39 16 4 C -0.20 -2.79 9.77 -37.81 -0.37 -3.16 16 5 C 0.55 9.27 7.68 -12.78 -0.10 9.17 16 6 O -0.55 -10.43 12.74 5.24 0.07 -10.37 16 7 N -0.69 -12.08 4.03 -56.20 -0.23 -12.31 16 8 C 0.18 3.66 2.12 -69.08 -0.15 3.51 16 9 H 0.09 1.90 7.44 -51.93 -0.39 1.51 16 10 C 0.02 0.56 4.49 -27.88 -0.13 0.43 16 11 C -0.52 -13.62 8.84 -34.44 -0.30 -13.92 16 12 H 0.06 1.50 7.74 -52.49 -0.41 1.09 16 13 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 14 N -0.89 -25.35 13.29 55.43 0.74 -24.61 16 15 Si 0.89 20.90 29.54 -169.99 -5.02 15.88 16 16 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 17 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 18 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 19 C -0.07 -1.29 4.91 -104.62 -0.51 -1.81 16 20 C -0.11 -1.83 9.67 -39.59 -0.38 -2.21 16 21 C -0.12 -1.81 10.05 -39.59 -0.40 -2.21 16 22 C -0.13 -1.88 10.05 -39.58 -0.40 -2.28 16 23 C -0.12 -1.82 10.05 -39.58 -0.40 -2.22 16 24 C -0.11 -1.78 9.32 -39.58 -0.37 -2.15 16 25 H 0.10 1.33 7.22 -51.93 -0.38 0.95 16 26 H 0.06 0.62 8.05 -51.93 -0.42 0.20 16 27 H 0.09 1.28 7.22 -51.93 -0.38 0.90 16 28 H 0.14 1.60 8.06 -52.49 -0.42 1.18 16 29 H 0.40 6.49 8.58 -40.82 -0.35 6.14 16 30 H 0.03 0.90 8.14 -51.92 -0.42 0.47 16 31 H 0.02 0.61 8.14 -51.93 -0.42 0.18 16 32 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 33 H 0.12 1.95 8.04 -52.49 -0.42 1.53 16 34 H 0.12 1.40 8.06 -52.49 -0.42 0.98 16 35 H 0.11 1.27 8.06 -52.49 -0.42 0.85 16 36 H 0.11 1.37 8.06 -52.49 -0.42 0.95 16 37 H 0.12 1.79 7.72 -52.49 -0.41 1.39 16 LS Contribution 336.03 15.07 5.06 5.06 Total: -1.00 -29.23 336.03 -9.23 -38.45 By element: Atomic # 1 Polarization: 11.59 SS G_CDS: -4.81 Total: 6.78 kcal Atomic # 6 Polarization: -12.96 SS G_CDS: -3.53 Total: -16.50 kcal Atomic # 7 Polarization: -37.43 SS G_CDS: 0.51 Total: -36.92 kcal Atomic # 8 Polarization: -10.43 SS G_CDS: 0.07 Total: -10.37 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.88 kcal Atomic # 17 Polarization: -0.89 SS G_CDS: -1.50 Total: -2.39 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -29.23 -9.23 -38.45 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000901171485.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.103 kcal (2) G-P(sol) polarization free energy of solvation -29.225 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.225 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.450 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.347 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds