Wall clock time and date at job start Tue Mar 31 2020 07:27:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 Cl 1.73591 * 120.00339 * 2 1 4 4 C 1.33347 * 119.99741 * 180.02562 * 2 1 3 5 5 C 1.46837 * 119.99857 * 359.97438 * 4 2 1 6 6 O 1.21643 * 120.00177 * 0.02562 * 5 4 2 7 7 N 1.34777 * 119.99823 * 180.02562 * 5 4 2 8 8 C 1.46494 * 120.00188 * 180.02562 * 7 5 4 9 9 H 1.09000 * 109.47081 * 325.00162 * 8 7 5 10 10 C 1.53001 * 109.47302 * 205.00083 * 8 7 5 11 11 C 1.50701 * 109.47232 * 64.99671 * 10 8 7 12 12 H 1.08001 * 119.99717 * 0.02562 * 11 10 8 13 13 C 1.37876 * 119.99813 * 179.97438 * 11 10 8 14 14 N 1.31510 * 120.00272 * 0.02562 * 13 11 10 15 15 Si 1.86805 * 119.99744 * 180.02562 * 13 11 10 16 16 H 1.48499 * 109.47025 * 60.00075 * 15 13 11 17 17 H 1.48495 * 109.46903 * 180.02562 * 15 13 11 18 18 H 1.48503 * 109.46719 * 300.00202 * 15 13 11 19 19 C 1.50703 * 109.47581 * 84.99858 * 8 7 5 20 20 C 1.38235 * 120.00292 * 220.00303 * 19 8 7 21 21 C 1.38230 * 119.99899 * 179.97438 * 20 19 8 22 22 C 1.38235 * 120.00326 * 359.95697 * 21 20 19 23 23 C 1.38234 * 119.99814 * 359.97438 * 22 21 20 24 24 C 1.38234 * 119.99503 * 39.97596 * 19 8 7 25 25 H 1.08999 * 109.47083 * 240.00098 * 1 2 3 26 26 H 1.08995 * 109.46463 * 359.97438 * 1 2 3 27 27 H 1.08998 * 109.46864 * 119.99830 * 1 2 3 28 28 H 1.07996 * 120.00017 * 179.97438 * 4 2 1 29 29 H 0.97005 * 119.99889 * 0.02562 * 7 5 4 30 30 H 1.09007 * 109.47213 * 184.99910 * 10 8 7 31 31 H 1.08998 * 109.47120 * 304.99384 * 10 8 7 32 32 H 0.97001 * 120.00530 * 179.97438 * 14 13 11 33 33 H 1.08001 * 119.99730 * 359.97438 * 20 19 8 34 34 H 1.08000 * 120.00376 * 179.97438 * 21 20 19 35 35 H 1.08000 * 120.00616 * 179.72578 * 22 21 20 36 36 H 1.08001 * 120.00299 * 179.97438 * 23 22 21 37 37 H 1.07997 * 120.00455 * 0.02562 * 24 19 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 17 2.3751 1.5033 0.0000 4 6 2.1738 -1.1549 -0.0005 5 6 1.4395 -2.4264 -0.0005 6 8 0.2231 -2.4264 -0.0005 7 7 2.1133 -3.5937 -0.0005 8 6 1.3808 -4.8623 -0.0011 9 1 0.4699 -4.7562 0.5880 10 6 2.2578 -5.9579 0.6087 11 6 2.5141 -5.6461 2.0606 12 1 2.0933 -4.7559 2.5042 13 6 3.2850 -6.4980 2.8229 14 7 3.7970 -7.5823 2.2828 15 14 3.6022 -6.1119 4.6229 16 1 2.3095 -6.0496 5.3510 17 1 4.4534 -7.1752 5.2145 18 1 4.2964 -4.8038 4.7336 19 6 1.0229 -5.2352 -1.4167 20 6 -0.2145 -5.7851 -1.6948 21 6 -0.5430 -6.1266 -2.9934 22 6 0.3656 -5.9175 -4.0140 23 6 1.6025 -5.3663 -3.7361 24 6 1.9318 -5.0269 -2.4371 25 1 -0.3633 -0.5138 0.8900 26 1 -0.3632 1.0277 0.0005 27 1 -0.3633 -0.5138 -0.8900 28 1 3.2537 -1.1549 -0.0009 29 1 3.0834 -3.5937 -0.0001 30 1 1.7484 -6.9182 0.5276 31 1 3.2064 -6.0036 0.0738 32 1 4.3397 -8.1814 2.8189 33 1 -0.9246 -5.9478 -0.8975 34 1 -1.5096 -6.5565 -3.2107 35 1 0.1107 -6.1884 -5.0279 36 1 2.3125 -5.2033 -4.5334 37 1 2.8986 -4.5973 -2.2199 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000901171485.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:27:54 Heat of formation + Delta-G solvation = -30.389582 kcal Electronic energy + Delta-G solvation = -20743.383909 eV Core-core repulsion = 17510.641655 eV Total energy + Delta-G solvation = -3232.742255 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 293.092 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.15426 -39.83931 -37.98487 -36.89305 -34.77592 -34.51946 -32.62723 -31.68683 -30.57391 -28.86601 -26.69156 -23.91215 -23.65699 -23.13663 -21.26984 -20.55678 -18.64921 -18.10178 -17.68232 -16.97748 -16.42707 -16.31896 -16.06752 -15.71173 -15.41570 -14.75426 -14.60172 -14.32356 -14.17374 -13.97537 -13.93213 -13.65623 -13.42056 -12.91758 -12.83624 -12.83072 -12.63776 -12.44200 -12.14427 -11.98283 -11.85419 -11.58384 -11.33325 -10.74925 -10.55154 -10.34183 -9.84959 -9.73573 -9.50754 -8.19895 -6.30072 0.11046 0.52051 0.57365 0.86716 1.40680 1.41831 1.49768 2.24740 2.40180 2.49399 2.99810 3.14679 3.69036 3.96834 4.04857 4.09249 4.22477 4.33711 4.38541 4.46750 4.66388 4.70904 4.75885 4.80113 4.84504 5.03457 5.13815 5.20217 5.22461 5.31812 5.44115 5.61953 5.62524 5.65726 5.78332 5.91947 6.16581 6.21248 6.69573 6.82603 7.31349 7.39030 8.90543 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.008712 B = 0.006227 C = 0.003970 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3213.055711 B = 4495.826487 C = 7051.686461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C 0.015 3.985 3 Cl -0.055 7.055 4 C -0.212 4.212 5 C 0.543 3.457 6 O -0.572 6.572 7 N -0.690 5.690 8 C 0.202 3.798 9 H 0.062 0.938 10 C 0.037 3.963 11 C -0.530 4.530 12 H 0.054 0.946 13 C 0.012 3.988 14 N -0.926 5.926 15 Si 0.954 3.046 16 H -0.275 1.275 17 H -0.284 1.284 18 H -0.266 1.266 19 C -0.097 4.097 20 C -0.131 4.131 21 C -0.124 4.124 22 C -0.129 4.129 23 C -0.125 4.125 24 C -0.122 4.122 25 H 0.080 0.920 26 H 0.084 0.916 27 H 0.083 0.917 28 H 0.157 0.843 29 H 0.409 0.591 30 H 0.004 0.996 31 H 0.012 0.988 32 H 0.264 0.736 33 H 0.114 0.886 34 H 0.144 0.856 35 H 0.150 0.850 36 H 0.145 0.855 37 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.500 12.263 -10.244 16.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.013 4.013 3 Cl -0.026 7.026 4 C -0.234 4.234 5 C 0.333 3.667 6 O -0.455 6.455 7 N -0.339 5.339 8 C 0.097 3.903 9 H 0.080 0.920 10 C 0.000 4.000 11 C -0.568 4.568 12 H 0.073 0.927 13 C -0.187 4.187 14 N -0.566 5.566 15 Si 0.780 3.220 16 H -0.200 1.200 17 H -0.209 1.209 18 H -0.191 1.191 19 C -0.099 4.099 20 C -0.150 4.150 21 C -0.141 4.141 22 C -0.147 4.147 23 C -0.143 4.143 24 C -0.140 4.140 25 H 0.098 0.902 26 H 0.103 0.897 27 H 0.101 0.899 28 H 0.174 0.826 29 H 0.244 0.756 30 H 0.022 0.978 31 H 0.030 0.970 32 H 0.073 0.927 33 H 0.132 0.868 34 H 0.161 0.839 35 H 0.168 0.832 36 H 0.163 0.837 37 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -4.151 12.220 -10.189 16.443 hybrid contribution 0.928 -0.240 1.277 1.597 sum -3.223 11.981 -8.912 15.276 Atomic orbital electron populations 1.21126 0.87567 1.03094 1.04294 1.24102 0.95804 0.86571 0.94855 1.98390 1.76509 1.31754 1.95977 1.22634 1.01918 0.90480 1.08388 1.18445 0.87177 0.84653 0.76434 1.90747 1.14684 1.88061 1.51988 1.45739 1.10649 1.04659 1.72854 1.19723 0.95359 0.83810 0.91396 0.92011 1.19135 0.93878 0.92258 0.94734 1.21377 1.31284 1.08080 0.96035 0.92750 1.25765 0.95586 0.94792 1.02586 1.70058 1.34921 1.13516 1.38064 0.85664 0.78156 0.78112 0.80098 1.20036 1.20920 1.19113 1.20436 0.94922 0.98798 0.95705 1.21170 0.96068 0.99861 0.97890 1.21383 1.00734 0.99915 0.92110 1.21464 0.93735 0.99358 1.00160 1.21433 0.97699 0.98927 0.96257 1.21074 0.99112 1.00650 0.93154 0.90191 0.89684 0.89852 0.82554 0.75569 0.97800 0.97004 0.92735 0.86818 0.83871 0.83202 0.83728 0.86207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.53 8.38 71.24 0.60 -1.93 16 2 C 0.02 0.37 6.57 24.58 0.16 0.53 16 3 Cl -0.06 -1.12 28.94 -2.72 -0.08 -1.20 16 4 C -0.21 -5.67 9.77 23.41 0.23 -5.44 16 5 C 0.54 18.71 7.68 86.49 0.66 19.37 16 6 O -0.57 -22.51 12.74 -4.17 -0.05 -22.57 16 7 N -0.69 -24.87 4.03 -449.96 -1.81 -26.68 16 8 C 0.20 8.41 2.12 44.25 0.09 8.51 16 9 H 0.06 2.85 7.44 -2.39 -0.02 2.83 16 10 C 0.04 1.85 4.49 29.85 0.13 1.99 16 11 C -0.53 -28.45 8.84 25.60 0.23 -28.23 16 12 H 0.05 2.90 7.74 -2.91 -0.02 2.88 16 13 C 0.01 0.63 5.46 84.66 0.46 1.09 16 14 N -0.93 -53.79 13.29 21.45 0.28 -53.51 16 15 Si 0.95 43.15 29.54 68.60 2.03 45.18 16 16 H -0.27 -12.29 7.11 99.48 0.71 -11.59 16 17 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 18 H -0.27 -11.52 7.11 99.48 0.71 -10.82 16 19 C -0.10 -3.64 4.91 -19.87 -0.10 -3.74 16 20 C -0.13 -4.56 9.67 22.27 0.22 -4.35 16 21 C -0.12 -3.46 10.05 22.27 0.22 -3.23 16 22 C -0.13 -3.24 10.05 22.27 0.22 -3.02 16 23 C -0.13 -3.39 10.05 22.27 0.22 -3.16 16 24 C -0.12 -3.99 9.32 22.27 0.21 -3.78 16 25 H 0.08 2.23 7.22 -2.39 -0.02 2.21 16 26 H 0.08 1.59 8.05 -2.39 -0.02 1.57 16 27 H 0.08 2.24 7.22 -2.39 -0.02 2.22 16 28 H 0.16 3.44 8.06 -2.91 -0.02 3.41 16 29 H 0.41 13.47 8.58 -92.70 -0.80 12.67 16 30 H 0.00 0.21 8.14 -2.38 -0.02 0.19 16 31 H 0.01 0.60 8.14 -2.39 -0.02 0.58 16 32 H 0.26 14.56 8.31 -92.71 -0.77 13.79 16 33 H 0.11 3.93 8.04 -2.91 -0.02 3.90 16 34 H 0.14 3.13 8.06 -2.91 -0.02 3.10 16 35 H 0.15 2.67 8.06 -2.91 -0.02 2.65 16 36 H 0.14 2.98 8.06 -2.91 -0.02 2.96 16 37 H 0.12 3.71 7.72 -2.91 -0.02 3.69 16 Total: -1.00 -64.02 336.03 4.21 -59.81 By element: Atomic # 1 Polarization: 24.09 SS G_CDS: 0.28 Total: 24.37 kcal Atomic # 6 Polarization: -28.96 SS G_CDS: 3.56 Total: -25.40 kcal Atomic # 7 Polarization: -78.66 SS G_CDS: -1.53 Total: -80.19 kcal Atomic # 8 Polarization: -22.51 SS G_CDS: -0.05 Total: -22.57 kcal Atomic # 14 Polarization: 43.15 SS G_CDS: 2.03 Total: 45.18 kcal Atomic # 17 Polarization: -1.12 SS G_CDS: -0.08 Total: -1.20 kcal Total: -64.02 4.21 -59.81 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000901171485.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.419 kcal (2) G-P(sol) polarization free energy of solvation -64.022 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.808 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds