Wall clock time and date at job start Tue Mar 31 2020 07:27:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 Cl 1.73603 * 119.99841 * 2 1 4 4 C 1.33347 * 120.00235 * 180.02562 * 2 1 3 5 5 C 1.46836 * 119.99827 * 180.02562 * 4 2 1 6 6 O 1.21642 * 120.00169 * 359.97438 * 5 4 2 7 7 N 1.34772 * 119.99673 * 180.02562 * 5 4 2 8 8 C 1.46500 * 119.99946 * 184.87666 * 7 5 4 9 9 H 1.08992 * 109.47057 * 31.56677 * 8 7 5 10 10 C 1.53005 * 109.47152 * 151.56546 * 8 7 5 11 11 C 1.50700 * 109.46855 * 294.53053 * 10 8 7 12 12 H 1.08001 * 120.00121 * 354.98848 * 11 10 8 13 13 C 1.37876 * 119.99981 * 174.98438 * 11 10 8 14 14 N 1.31510 * 120.00175 * 0.02562 * 13 11 10 15 15 Si 1.86809 * 119.99990 * 179.97438 * 13 11 10 16 16 H 1.48499 * 109.46948 * 90.00306 * 15 13 11 17 17 H 1.48498 * 109.47077 * 210.00285 * 15 13 11 18 18 H 1.48502 * 109.46953 * 330.00267 * 15 13 11 19 19 C 1.50701 * 109.47064 * 271.56144 * 8 7 5 20 20 C 1.38232 * 120.00075 * 319.72428 * 19 8 7 21 21 C 1.38240 * 119.99812 * 179.80676 * 20 19 8 22 22 C 1.38232 * 120.00184 * 0.40479 * 21 20 19 23 23 C 1.38233 * 119.99829 * 359.85289 * 22 21 20 24 24 C 1.38232 * 119.99736 * 140.00293 * 19 8 7 25 25 H 1.08992 * 109.47064 * 239.99928 * 1 2 3 26 26 H 1.09000 * 109.46925 * 0.02562 * 1 2 3 27 27 H 1.08997 * 109.46575 * 119.99926 * 1 2 3 28 28 H 1.07992 * 119.99450 * 0.02562 * 4 2 1 29 29 H 0.96999 * 120.00338 * 4.87806 * 7 5 4 30 30 H 1.08996 * 109.47129 * 54.52667 * 10 8 7 31 31 H 1.08999 * 109.47311 * 174.53289 * 10 8 7 32 32 H 0.97004 * 120.00547 * 180.02562 * 14 13 11 33 33 H 1.08001 * 120.00157 * 0.02562 * 20 19 8 34 34 H 1.08006 * 119.99464 * 180.23395 * 21 20 19 35 35 H 1.07994 * 119.99900 * 179.83201 * 22 21 20 36 36 H 1.08002 * 120.00245 * 179.97438 * 23 22 21 37 37 H 1.07997 * 120.00339 * 359.97438 * 24 19 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 17 2.3750 1.5035 0.0000 4 6 2.1738 -1.1548 -0.0005 5 6 3.6422 -1.1547 0.0001 6 8 4.2503 -0.1012 0.0005 7 7 4.3160 -2.3218 -0.0010 8 6 5.7770 -2.3242 0.1074 9 1 6.0981 -1.4736 0.7085 10 6 6.2368 -3.6223 0.7742 11 6 5.7414 -3.6591 2.1969 12 1 5.2271 -2.8049 2.6119 13 6 5.9446 -4.7833 2.9689 14 7 6.5713 -5.8233 2.4638 15 14 5.3311 -4.8285 4.7328 16 1 3.9459 -5.3629 4.7614 17 1 6.2162 -5.7039 5.5424 18 1 5.3435 -3.4548 5.2966 19 6 6.3830 -2.2244 -1.2688 20 6 5.8275 -2.9276 -2.3213 21 6 6.3810 -2.8329 -3.5844 22 6 7.4950 -2.0416 -3.7934 23 6 8.0537 -1.3425 -2.7398 24 6 7.4978 -1.4342 -1.4773 25 1 -0.3633 -0.5138 0.8899 26 1 -0.3633 1.0277 -0.0005 27 1 -0.3632 -0.5138 -0.8900 28 1 1.6338 -2.0900 -0.0014 29 1 3.8338 -3.1603 -0.0735 30 1 5.8337 -4.4744 0.2270 31 1 7.3258 -3.6683 0.7674 32 1 6.7140 -6.6144 3.0067 33 1 4.9590 -3.5483 -2.1574 34 1 5.9447 -3.3794 -4.4075 35 1 7.9290 -1.9697 -4.7797 36 1 8.9243 -0.7246 -2.9029 37 1 7.9343 -0.8880 -0.6542 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000901171486.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:27:58 Heat of formation + Delta-G solvation = -7.014462 kcal Electronic energy + Delta-G solvation = -20745.615933 eV Core-core repulsion = 17513.887300 eV Total energy + Delta-G solvation = -3231.728633 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 293.092 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.58601 -38.43458 -36.56422 -35.12132 -33.73913 -32.70583 -31.11172 -30.42950 -28.90299 -27.93813 -24.90313 -22.30739 -22.02331 -21.61129 -19.73619 -19.33942 -17.31899 -16.67913 -16.15111 -15.58738 -14.87831 -14.56823 -14.43137 -14.32291 -14.01040 -13.60813 -13.50911 -12.98211 -12.71012 -12.55805 -12.42212 -12.16999 -12.09435 -11.56946 -11.51665 -11.14484 -10.92672 -10.81341 -10.69791 -10.59353 -10.40902 -9.76598 -9.27835 -9.04306 -8.97295 -8.51477 -8.44560 -8.29864 -8.15027 -6.08579 -4.11635 1.29470 1.81484 1.83456 2.32403 3.26567 3.34268 3.38771 3.69811 3.80718 4.26840 4.40401 4.74603 5.11871 5.27603 5.28061 5.28998 5.30213 5.36111 5.41474 5.56827 5.61050 5.87512 5.94129 5.96975 6.07170 6.23992 6.39464 6.47763 6.61930 6.87648 6.88346 6.96848 7.14874 7.43659 7.50888 7.64663 7.88243 8.19641 8.27582 8.84029 8.94261 9.53162 11.01931 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.008958 B = 0.006654 C = 0.004224 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3125.093364 B = 4207.126579 C = 6627.662191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.015 4.015 3 Cl -0.045 7.045 4 C -0.199 4.199 5 C 0.534 3.466 6 O -0.531 6.531 7 N -0.695 5.695 8 C 0.186 3.814 9 H 0.087 0.913 10 C 0.023 3.977 11 C -0.518 4.518 12 H 0.057 0.943 13 C 0.060 3.940 14 N -0.893 5.893 15 Si 0.891 3.109 16 H -0.281 1.281 17 H -0.286 1.286 18 H -0.274 1.274 19 C -0.070 4.070 20 C -0.107 4.107 21 C -0.125 4.125 22 C -0.136 4.136 23 C -0.123 4.123 24 C -0.108 4.108 25 H 0.085 0.915 26 H 0.076 0.924 27 H 0.084 0.916 28 H 0.144 0.856 29 H 0.399 0.601 30 H 0.028 0.972 31 H 0.030 0.970 32 H 0.261 0.739 33 H 0.116 0.884 34 H 0.114 0.886 35 H 0.113 0.887 36 H 0.115 0.885 37 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.806 7.777 -9.435 15.068 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.044 4.044 3 Cl -0.016 7.016 4 C -0.221 4.221 5 C 0.321 3.679 6 O -0.409 6.409 7 N -0.343 5.343 8 C 0.081 3.919 9 H 0.105 0.895 10 C -0.014 4.014 11 C -0.556 4.556 12 H 0.076 0.924 13 C -0.141 4.141 14 N -0.532 5.532 15 Si 0.719 3.281 16 H -0.207 1.207 17 H -0.212 1.212 18 H -0.198 1.198 19 C -0.071 4.071 20 C -0.126 4.126 21 C -0.143 4.143 22 C -0.154 4.154 23 C -0.141 4.141 24 C -0.127 4.127 25 H 0.104 0.896 26 H 0.095 0.905 27 H 0.103 0.897 28 H 0.162 0.838 29 H 0.233 0.767 30 H 0.046 0.954 31 H 0.049 0.951 32 H 0.071 0.929 33 H 0.134 0.866 34 H 0.132 0.868 35 H 0.131 0.869 36 H 0.133 0.867 37 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -8.210 8.471 -9.354 15.055 hybrid contribution -0.451 -0.657 0.976 1.260 sum -8.661 7.814 -8.378 14.361 Atomic orbital electron populations 1.21098 0.88579 1.04188 1.03732 1.24061 0.94802 0.87986 0.97560 1.98421 1.76501 1.31158 1.95513 1.22771 0.95298 0.97827 1.06229 1.18256 0.87414 0.84538 0.77725 1.90860 1.70044 1.30547 1.49481 1.45841 1.07874 1.07885 1.72743 1.20224 0.78096 1.02950 0.90603 0.89469 1.19401 0.97341 0.89476 0.95202 1.21136 1.37223 1.00513 0.96749 0.92437 1.24981 0.95174 0.95651 0.98337 1.69956 1.41621 1.04786 1.36794 0.86608 0.78604 0.78042 0.84867 1.20697 1.21225 1.19845 1.20560 0.95191 0.94848 0.96480 1.20899 1.00019 0.99195 0.92463 1.21036 0.96833 0.99558 0.96911 1.20982 0.97162 0.98691 0.98538 1.21037 0.99926 0.99985 0.93153 1.21017 0.96170 0.98550 0.96943 0.89611 0.90484 0.89728 0.83843 0.76650 0.95394 0.95136 0.92893 0.86604 0.86783 0.86893 0.86663 0.86228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.99 10.12 36.01 0.36 -0.62 16 2 C -0.02 -0.19 6.56 -36.02 -0.24 -0.43 16 3 Cl -0.04 -0.68 25.74 -51.86 -1.33 -2.02 16 4 C -0.20 -2.75 9.68 -37.81 -0.37 -3.12 16 5 C 0.53 9.61 7.72 -12.79 -0.10 9.51 16 6 O -0.53 -11.11 13.36 5.24 0.07 -11.04 16 7 N -0.69 -12.62 4.01 -56.20 -0.23 -12.84 16 8 C 0.19 3.81 2.12 -69.08 -0.15 3.66 16 9 H 0.09 1.97 7.40 -51.93 -0.38 1.58 16 10 C 0.02 0.56 4.51 -27.88 -0.13 0.43 16 11 C -0.52 -13.75 8.85 -34.44 -0.30 -14.05 16 12 H 0.06 1.54 7.75 -52.49 -0.41 1.13 16 13 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 14 N -0.89 -25.57 13.29 55.43 0.74 -24.83 16 15 Si 0.89 21.06 29.54 -169.99 -5.02 16.04 16 16 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 17 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 18 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 19 C -0.07 -1.31 4.94 -104.63 -0.52 -1.83 16 20 C -0.11 -1.83 9.32 -39.58 -0.37 -2.20 16 21 C -0.13 -1.89 10.05 -39.58 -0.40 -2.29 16 22 C -0.14 -1.97 10.05 -39.59 -0.40 -2.37 16 23 C -0.12 -1.89 10.05 -39.58 -0.40 -2.29 16 24 C -0.11 -1.92 9.67 -39.58 -0.38 -2.30 16 25 H 0.09 0.62 8.14 -51.93 -0.42 0.19 16 26 H 0.08 0.58 8.05 -51.93 -0.42 0.16 16 27 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.14 1.53 8.06 -52.49 -0.42 1.11 16 29 H 0.40 6.56 8.62 -40.82 -0.35 6.21 16 30 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 33 H 0.12 1.84 7.73 -52.49 -0.41 1.43 16 34 H 0.11 1.41 8.06 -52.48 -0.42 0.99 16 35 H 0.11 1.32 8.06 -52.49 -0.42 0.90 16 36 H 0.12 1.47 8.06 -52.49 -0.42 1.05 16 37 H 0.12 2.04 8.04 -52.49 -0.42 1.62 16 LS Contribution 337.04 15.07 5.08 5.08 Total: -1.00 -31.46 337.04 -9.07 -40.54 By element: Atomic # 1 Polarization: 10.33 SS G_CDS: -4.91 Total: 5.42 kcal Atomic # 6 Polarization: -12.88 SS G_CDS: -3.47 Total: -16.35 kcal Atomic # 7 Polarization: -38.18 SS G_CDS: 0.51 Total: -37.67 kcal Atomic # 8 Polarization: -11.11 SS G_CDS: 0.07 Total: -11.04 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.04 kcal Atomic # 17 Polarization: -0.68 SS G_CDS: -1.33 Total: -2.02 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -31.46 -9.07 -40.54 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000901171486.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.525 kcal (2) G-P(sol) polarization free energy of solvation -31.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.540 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.014 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds