Wall clock time and date at job start Tue Mar 31 2020 07:27:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 Cl 1.73603 * 119.99841 * 2 1 4 4 C 1.33347 * 120.00235 * 180.02562 * 2 1 3 5 5 C 1.46836 * 119.99827 * 180.02562 * 4 2 1 6 6 O 1.21642 * 120.00169 * 359.97438 * 5 4 2 7 7 N 1.34772 * 119.99673 * 180.02562 * 5 4 2 8 8 C 1.46500 * 119.99946 * 184.87666 * 7 5 4 9 9 H 1.08992 * 109.47057 * 31.56677 * 8 7 5 10 10 C 1.53005 * 109.47152 * 151.56546 * 8 7 5 11 11 C 1.50700 * 109.46855 * 294.53053 * 10 8 7 12 12 H 1.08001 * 120.00121 * 354.98848 * 11 10 8 13 13 C 1.37876 * 119.99981 * 174.98438 * 11 10 8 14 14 N 1.31510 * 120.00175 * 0.02562 * 13 11 10 15 15 Si 1.86809 * 119.99990 * 179.97438 * 13 11 10 16 16 H 1.48499 * 109.46948 * 90.00306 * 15 13 11 17 17 H 1.48498 * 109.47077 * 210.00285 * 15 13 11 18 18 H 1.48502 * 109.46953 * 330.00267 * 15 13 11 19 19 C 1.50701 * 109.47064 * 271.56144 * 8 7 5 20 20 C 1.38232 * 120.00075 * 319.72428 * 19 8 7 21 21 C 1.38240 * 119.99812 * 179.80676 * 20 19 8 22 22 C 1.38232 * 120.00184 * 0.40479 * 21 20 19 23 23 C 1.38233 * 119.99829 * 359.85289 * 22 21 20 24 24 C 1.38232 * 119.99736 * 140.00293 * 19 8 7 25 25 H 1.08992 * 109.47064 * 239.99928 * 1 2 3 26 26 H 1.09000 * 109.46925 * 0.02562 * 1 2 3 27 27 H 1.08997 * 109.46575 * 119.99926 * 1 2 3 28 28 H 1.07992 * 119.99450 * 0.02562 * 4 2 1 29 29 H 0.96999 * 120.00338 * 4.87806 * 7 5 4 30 30 H 1.08996 * 109.47129 * 54.52667 * 10 8 7 31 31 H 1.08999 * 109.47311 * 174.53289 * 10 8 7 32 32 H 0.97004 * 120.00547 * 180.02562 * 14 13 11 33 33 H 1.08001 * 120.00157 * 0.02562 * 20 19 8 34 34 H 1.08006 * 119.99464 * 180.23395 * 21 20 19 35 35 H 1.07994 * 119.99900 * 179.83201 * 22 21 20 36 36 H 1.08002 * 120.00245 * 179.97438 * 23 22 21 37 37 H 1.07997 * 120.00339 * 359.97438 * 24 19 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 17 2.3750 1.5035 0.0000 4 6 2.1738 -1.1548 -0.0005 5 6 3.6422 -1.1547 0.0001 6 8 4.2503 -0.1012 0.0005 7 7 4.3160 -2.3218 -0.0010 8 6 5.7770 -2.3242 0.1074 9 1 6.0981 -1.4736 0.7085 10 6 6.2368 -3.6223 0.7742 11 6 5.7414 -3.6591 2.1969 12 1 5.2271 -2.8049 2.6119 13 6 5.9446 -4.7833 2.9689 14 7 6.5713 -5.8233 2.4638 15 14 5.3311 -4.8285 4.7328 16 1 3.9459 -5.3629 4.7614 17 1 6.2162 -5.7039 5.5424 18 1 5.3435 -3.4548 5.2966 19 6 6.3830 -2.2244 -1.2688 20 6 5.8275 -2.9276 -2.3213 21 6 6.3810 -2.8329 -3.5844 22 6 7.4950 -2.0416 -3.7934 23 6 8.0537 -1.3425 -2.7398 24 6 7.4978 -1.4342 -1.4773 25 1 -0.3633 -0.5138 0.8899 26 1 -0.3633 1.0277 -0.0005 27 1 -0.3632 -0.5138 -0.8900 28 1 1.6338 -2.0900 -0.0014 29 1 3.8338 -3.1603 -0.0735 30 1 5.8337 -4.4744 0.2270 31 1 7.3258 -3.6683 0.7674 32 1 6.7140 -6.6144 3.0067 33 1 4.9590 -3.5483 -2.1574 34 1 5.9447 -3.3794 -4.4075 35 1 7.9290 -1.9697 -4.7797 36 1 8.9243 -0.7246 -2.9029 37 1 7.9343 -0.8880 -0.6542 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000901171486.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:27:57 Heat of formation + Delta-G solvation = -24.653022 kcal Electronic energy + Delta-G solvation = -20746.380798 eV Core-core repulsion = 17513.887300 eV Total energy + Delta-G solvation = -3232.493499 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 293.092 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.00424 -39.73665 -37.70157 -36.69644 -34.77460 -34.69482 -32.53103 -31.68896 -30.55945 -29.00245 -26.65176 -23.81705 -23.52207 -22.83565 -21.21607 -20.51719 -18.79663 -18.34737 -17.67549 -17.03120 -16.48244 -16.23060 -15.65320 -15.53796 -15.17760 -14.86469 -14.58796 -14.37543 -14.18422 -14.01152 -13.69121 -13.61749 -13.36813 -12.93823 -12.92514 -12.64090 -12.57712 -12.48199 -12.13133 -11.98873 -11.84376 -11.58435 -11.31333 -10.61343 -10.33673 -10.18851 -9.79652 -9.72587 -9.50577 -8.20140 -6.30201 0.19513 0.52464 0.56608 1.28156 1.38606 1.40929 1.51272 2.34390 2.40033 2.46768 2.99034 3.13753 3.73884 4.01229 4.03994 4.21240 4.26289 4.32588 4.43617 4.46751 4.66845 4.72639 4.75303 4.80461 4.85688 4.98824 5.13772 5.20586 5.25636 5.30345 5.43893 5.61733 5.63355 5.65023 5.78011 5.94007 6.16787 6.21382 6.78361 6.82062 7.38242 7.44043 8.90504 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.008958 B = 0.006654 C = 0.004224 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3125.093364 B = 4207.126579 C = 6627.662191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C 0.000 4.000 3 Cl -0.074 7.074 4 C -0.218 4.218 5 C 0.526 3.474 6 O -0.568 6.568 7 N -0.692 5.692 8 C 0.203 3.797 9 H 0.056 0.944 10 C 0.038 3.962 11 C -0.528 4.528 12 H 0.050 0.950 13 C 0.012 3.988 14 N -0.925 5.925 15 Si 0.956 3.044 16 H -0.267 1.267 17 H -0.283 1.283 18 H -0.274 1.274 19 C -0.097 4.097 20 C -0.121 4.121 21 C -0.125 4.125 22 C -0.130 4.130 23 C -0.124 4.124 24 C -0.134 4.134 25 H 0.104 0.896 26 H 0.086 0.914 27 H 0.109 0.891 28 H 0.179 0.821 29 H 0.407 0.593 30 H 0.015 0.985 31 H -0.001 1.001 32 H 0.264 0.736 33 H 0.121 0.879 34 H 0.147 0.853 35 H 0.151 0.849 36 H 0.143 0.857 37 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.624 7.610 -10.595 16.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.029 4.029 3 Cl -0.045 7.045 4 C -0.239 4.239 5 C 0.315 3.685 6 O -0.449 6.449 7 N -0.342 5.342 8 C 0.097 3.903 9 H 0.074 0.926 10 C 0.000 4.000 11 C -0.566 4.566 12 H 0.068 0.932 13 C -0.187 4.187 14 N -0.565 5.565 15 Si 0.781 3.219 16 H -0.192 1.192 17 H -0.209 1.209 18 H -0.199 1.199 19 C -0.098 4.098 20 C -0.139 4.139 21 C -0.142 4.142 22 C -0.148 4.148 23 C -0.142 4.142 24 C -0.153 4.153 25 H 0.123 0.877 26 H 0.104 0.896 27 H 0.128 0.872 28 H 0.196 0.804 29 H 0.243 0.757 30 H 0.034 0.966 31 H 0.018 0.982 32 H 0.073 0.927 33 H 0.139 0.861 34 H 0.165 0.835 35 H 0.169 0.831 36 H 0.160 0.840 37 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -10.052 8.296 -10.520 16.749 hybrid contribution 0.137 -0.569 1.271 1.400 sum -9.914 7.727 -9.249 15.606 Atomic orbital electron populations 1.21254 0.84699 1.05527 1.05703 1.24778 0.96909 0.86305 0.94892 1.98423 1.77594 1.33017 1.95473 1.22820 0.92579 0.99877 1.08658 1.18962 0.89266 0.83613 0.76628 1.90838 1.71262 1.31598 1.51192 1.45739 1.06848 1.08682 1.72895 1.19669 0.79816 0.99347 0.91448 0.92603 1.19138 0.95197 0.91026 0.94607 1.21364 1.37003 1.00248 0.97960 0.93162 1.25761 0.95281 0.95265 1.02371 1.70066 1.42714 1.05382 1.38379 0.85592 0.78634 0.77853 0.79830 1.19206 1.20908 1.19931 1.20466 0.96380 0.96991 0.95946 1.21069 1.00516 0.99276 0.93042 1.21443 0.96726 0.99290 0.96772 1.21460 0.96422 0.97077 0.99824 1.21378 1.00512 1.00087 0.92234 1.21167 0.96583 0.99283 0.98252 0.87730 0.89552 0.87242 0.80353 0.75730 0.96632 0.98238 0.92698 0.86064 0.83540 0.83126 0.83964 0.87144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.51 10.12 71.24 0.72 -0.79 16 2 C 0.00 0.00 6.56 24.58 0.16 0.16 16 3 Cl -0.07 -2.23 25.74 -2.72 -0.07 -2.30 16 4 C -0.22 -5.73 9.68 23.41 0.23 -5.50 16 5 C 0.53 19.27 7.72 86.49 0.67 19.94 16 6 O -0.57 -24.66 13.36 -4.16 -0.06 -24.71 16 7 N -0.69 -25.94 4.01 -449.97 -1.81 -27.74 16 8 C 0.20 8.81 2.12 44.25 0.09 8.90 16 9 H 0.06 2.74 7.40 -2.39 -0.02 2.72 16 10 C 0.04 1.92 4.51 29.85 0.13 2.05 16 11 C -0.53 -28.94 8.85 25.60 0.23 -28.71 16 12 H 0.05 2.78 7.75 -2.91 -0.02 2.75 16 13 C 0.01 0.66 5.46 84.66 0.46 1.12 16 14 N -0.93 -53.99 13.29 21.45 0.28 -53.71 16 15 Si 0.96 43.47 29.54 68.60 2.03 45.50 16 16 H -0.27 -11.50 7.11 99.48 0.71 -10.80 16 17 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 18 H -0.27 -12.42 7.11 99.48 0.71 -11.72 16 19 C -0.10 -3.78 4.94 -19.87 -0.10 -3.88 16 20 C -0.12 -4.10 9.32 22.27 0.21 -3.90 16 21 C -0.12 -3.48 10.05 22.27 0.22 -3.26 16 22 C -0.13 -3.42 10.05 22.27 0.22 -3.20 16 23 C -0.12 -3.69 10.05 22.27 0.22 -3.46 16 24 C -0.13 -4.94 9.67 22.27 0.22 -4.73 16 25 H 0.10 1.08 8.14 -2.39 -0.02 1.06 16 26 H 0.09 1.02 8.05 -2.39 -0.02 1.00 16 27 H 0.11 0.99 8.14 -2.39 -0.02 0.97 16 28 H 0.18 3.32 8.06 -2.91 -0.02 3.30 16 29 H 0.41 13.62 8.62 -92.71 -0.80 12.82 16 30 H 0.02 0.81 8.14 -2.39 -0.02 0.79 16 31 H 0.00 -0.04 8.14 -2.39 -0.02 -0.05 16 32 H 0.26 14.55 8.31 -92.71 -0.77 13.78 16 33 H 0.12 3.84 7.73 -2.91 -0.02 3.82 16 34 H 0.15 3.10 8.06 -2.91 -0.02 3.08 16 35 H 0.15 2.83 8.06 -2.91 -0.02 2.81 16 36 H 0.14 3.34 8.06 -2.91 -0.02 3.32 16 37 H 0.11 4.09 8.04 -2.91 -0.02 4.06 16 Total: -1.00 -70.84 337.04 4.34 -66.50 By element: Atomic # 1 Polarization: 21.45 SS G_CDS: 0.27 Total: 21.72 kcal Atomic # 6 Polarization: -28.94 SS G_CDS: 3.69 Total: -25.25 kcal Atomic # 7 Polarization: -79.93 SS G_CDS: -1.52 Total: -81.45 kcal Atomic # 8 Polarization: -24.66 SS G_CDS: -0.06 Total: -24.71 kcal Atomic # 14 Polarization: 43.47 SS G_CDS: 2.03 Total: 45.50 kcal Atomic # 17 Polarization: -2.23 SS G_CDS: -0.07 Total: -2.30 kcal Total: -70.84 4.34 -66.50 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000901171486.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.849 kcal (2) G-P(sol) polarization free energy of solvation -70.845 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.343 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.502 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds