Wall clock time and date at job start Tue Mar 31 2020 06:41:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38234 * 120.00929 * 2 1 4 4 C 1.38220 * 120.01649 * 180.25641 * 3 2 1 5 5 C 1.38262 * 120.02279 * 359.74151 * 4 3 2 6 6 C 1.50704 * 119.99336 * 180.02562 * 5 4 3 7 7 C 1.50697 * 109.46955 * 270.02520 * 6 5 4 8 8 O 1.21286 * 120.00744 * 359.97438 * 7 6 5 9 9 N 1.34781 * 119.99284 * 179.97438 * 7 6 5 10 10 C 1.37103 * 119.99616 * 179.97438 * 9 7 6 11 11 H 1.07997 * 119.99926 * 140.10534 * 10 9 7 12 12 C 1.38947 * 120.00055 * 320.11134 * 10 9 7 13 13 N 1.31414 * 119.99863 * 161.87779 * 12 10 9 14 14 Si 1.86798 * 120.00190 * 341.88023 * 12 10 9 15 15 H 1.48502 * 109.47460 * 93.80969 * 14 12 10 16 16 H 1.48502 * 109.47153 * 213.80915 * 14 12 10 17 17 H 1.48500 * 109.47037 * 333.80798 * 14 12 10 18 18 C 1.46501 * 120.00536 * 0.02562 * 9 7 6 19 19 C 1.53000 * 117.49828 * 182.28392 * 18 9 7 20 20 C 1.52995 * 59.99907 * 252.51043 * 19 18 9 21 21 C 1.38197 * 120.01287 * 0.02627 * 5 4 3 22 22 C 1.38329 * 120.00296 * 179.76634 * 2 1 3 23 23 Cl 1.73593 * 120.01513 * 0.02570 * 22 2 1 24 24 H 1.08997 * 109.47146 * 270.23723 * 1 2 3 25 25 H 1.09004 * 109.46697 * 30.23041 * 1 2 3 26 26 H 1.08997 * 109.47236 * 150.22837 * 1 2 3 27 27 H 1.08009 * 119.99229 * 359.97438 * 3 2 1 28 28 H 1.08002 * 119.98834 * 179.72224 * 4 3 2 29 29 H 1.09002 * 109.46994 * 30.02634 * 6 5 4 30 30 H 1.08999 * 109.46911 * 150.01855 * 6 5 4 31 31 H 0.97005 * 119.99865 * 179.97438 * 13 12 10 32 32 H 1.08996 * 115.54570 * 327.99015 * 18 9 7 33 33 H 1.09000 * 117.49914 * 0.02562 * 19 18 9 34 34 H 1.09004 * 117.49632 * 145.01871 * 19 18 9 35 35 H 1.09007 * 117.49910 * 252.50918 * 20 19 18 36 36 H 1.09002 * 117.51758 * 107.48549 * 20 19 18 37 37 H 1.08003 * 120.00153 * 180.02562 * 21 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1970 0.0000 4 6 3.5806 1.1972 -0.0054 5 6 4.2725 0.0002 -0.0053 6 6 5.7796 0.0012 -0.0106 7 6 6.2769 -0.0008 -1.4331 8 8 5.4856 -0.0033 -2.3523 9 7 7.6012 0.0002 -1.6839 10 6 8.0537 -0.0021 -2.9781 11 1 8.9086 0.5981 -3.2523 12 6 7.4124 -0.7767 -3.9369 13 7 7.5950 -0.5257 -5.2139 14 14 6.2905 -2.1746 -3.4109 15 1 4.8896 -1.6866 -3.3436 16 1 6.3824 -3.2809 -4.3973 17 1 6.7078 -2.6677 -2.0738 18 6 8.5570 0.0026 -0.5737 19 6 10.0456 0.0577 -0.9232 20 6 9.4320 -1.2393 -0.3921 21 6 3.5825 -1.1972 -0.0005 22 6 2.1988 -1.1979 0.0049 23 17 1.3313 -2.7015 0.0103 24 1 -0.3633 0.0043 1.0276 25 1 -0.3633 0.8880 -0.5174 26 1 -0.3633 -0.8920 -0.5103 27 1 1.6584 2.1324 -0.0004 28 1 4.1203 2.1327 -0.0099 29 1 6.1441 0.8922 0.5006 30 1 6.1452 -0.8877 0.5035 31 1 7.1475 -1.0667 -5.8833 32 1 8.2313 0.5247 0.3259 33 1 10.3136 0.0926 -1.9792 34 1 10.6994 0.6163 -0.2535 35 1 9.6822 -1.5341 0.6271 36 1 9.2962 -2.0584 -1.0984 37 1 4.1232 -2.1321 0.0000 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000930616462.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:41:38 Heat of formation + Delta-G solvation = 19.945106 kcal Electronic energy + Delta-G solvation = -21309.844786 eV Core-core repulsion = 18079.285207 eV Total energy + Delta-G solvation = -3230.559579 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 293.092 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.78109 -38.77869 -36.57401 -36.25020 -33.67002 -32.82159 -31.50002 -30.59655 -29.55361 -25.99401 -24.12699 -22.69013 -22.01278 -21.52926 -20.84013 -19.22486 -17.10728 -16.28992 -16.18292 -15.84287 -15.27212 -15.13159 -14.30326 -14.08791 -13.97150 -13.57314 -13.39012 -13.22546 -12.63450 -12.58178 -12.37649 -12.32032 -11.69267 -11.65757 -11.44479 -11.22886 -11.09519 -11.05275 -10.73872 -10.60522 -10.34507 -10.04639 -9.97023 -9.62337 -8.70889 -8.59323 -8.48608 -8.25457 -7.51273 -6.18153 -3.95981 1.33153 1.43298 2.24528 3.26895 3.47293 3.70706 3.71776 3.82275 4.36903 4.46987 4.65435 4.79482 4.85090 5.05790 5.15587 5.22751 5.37020 5.45990 5.51162 5.54288 5.57787 5.62201 5.65387 5.71114 5.79292 5.86970 6.02484 6.11823 6.13307 6.28186 6.35430 6.50123 6.63489 6.72664 6.82066 6.97705 7.83279 7.93497 8.74930 8.88668 9.41910 9.77997 10.85380 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.018569 B = 0.005381 C = 0.004955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1507.540294 B = 5202.246688 C = 5648.985052 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.087 4.087 3 C -0.109 4.109 4 C -0.095 4.095 5 C -0.041 4.041 6 C -0.100 4.100 7 C 0.447 3.553 8 O -0.531 6.531 9 N -0.435 5.435 10 C -0.349 4.349 11 H 0.097 0.903 12 C 0.089 3.911 13 N -0.867 5.867 14 Si 0.918 3.082 15 H -0.248 1.248 16 H -0.315 1.315 17 H -0.285 1.285 18 C 0.062 3.938 19 C -0.172 4.172 20 C -0.199 4.199 21 C -0.095 4.095 22 C -0.034 4.034 23 Cl -0.079 7.079 24 H 0.071 0.929 25 H 0.068 0.932 26 H 0.070 0.930 27 H 0.129 0.871 28 H 0.127 0.873 29 H 0.094 0.906 30 H 0.091 0.909 31 H 0.272 0.728 32 H 0.111 0.889 33 H 0.111 0.889 34 H 0.087 0.913 35 H 0.087 0.913 36 H 0.095 0.905 37 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.606 0.664 14.775 16.631 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.088 4.088 3 C -0.127 4.127 4 C -0.113 4.113 5 C -0.041 4.041 6 C -0.140 4.140 7 C 0.238 3.762 8 O -0.414 6.414 9 N -0.155 5.155 10 C -0.474 4.474 11 H 0.114 0.886 12 C -0.120 4.120 13 N -0.502 5.502 14 Si 0.750 3.250 15 H -0.174 1.174 16 H -0.246 1.246 17 H -0.211 1.211 18 C -0.044 4.044 19 C -0.209 4.209 20 C -0.238 4.238 21 C -0.114 4.114 22 C -0.060 4.060 23 Cl -0.050 7.050 24 H 0.089 0.911 25 H 0.087 0.913 26 H 0.089 0.911 27 H 0.147 0.853 28 H 0.145 0.855 29 H 0.113 0.887 30 H 0.109 0.891 31 H 0.082 0.918 32 H 0.129 0.871 33 H 0.129 0.871 34 H 0.106 0.894 35 H 0.105 0.895 36 H 0.114 0.886 37 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -8.108 0.523 14.098 16.272 hybrid contribution -0.310 -0.935 0.101 0.990 sum -8.417 -0.412 14.199 16.512 Atomic orbital electron populations 1.20814 0.90653 1.03260 1.02396 1.19661 0.96413 0.91477 1.01225 1.20885 0.94019 0.96814 1.00964 1.21067 0.94015 0.97814 0.98442 1.19347 0.94799 0.92491 0.97491 1.20708 0.91549 1.04110 0.97633 1.20046 0.83192 0.83236 0.89770 1.90551 1.53945 1.51502 1.45380 1.43148 1.02515 1.64731 1.05128 1.18774 1.18397 1.28839 0.81400 0.88567 1.25318 0.95543 0.96724 0.94389 1.69732 1.42117 1.37868 1.00503 0.86258 0.83708 0.78129 0.76857 1.17375 1.24597 1.21050 1.21828 0.88709 1.01327 0.92520 1.23121 0.94486 1.00096 1.03243 1.23276 1.05971 0.93237 1.01319 1.20854 0.91834 0.98771 0.99959 1.20664 0.92118 0.86268 1.06957 1.98329 1.76943 1.32717 1.97030 0.91078 0.91295 0.91068 0.85344 0.85470 0.88728 0.89103 0.91818 0.87092 0.87108 0.89418 0.89481 0.88615 0.85468 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.25 9.62 36.01 0.35 -0.91 16 2 C -0.09 -1.23 5.88 -104.59 -0.62 -1.84 16 3 C -0.11 -1.49 9.70 -39.59 -0.38 -1.87 16 4 C -0.10 -1.45 9.70 -39.58 -0.38 -1.84 16 5 C -0.04 -0.69 4.37 -104.63 -0.46 -1.15 16 6 C -0.10 -1.70 4.46 -29.03 -0.13 -1.83 16 7 C 0.45 10.34 5.87 -10.98 -0.06 10.27 16 8 O -0.53 -14.54 10.89 5.55 0.06 -14.48 16 9 N -0.43 -10.17 2.56 -107.73 -0.28 -10.45 16 10 C -0.35 -9.66 8.76 -14.93 -0.13 -9.79 16 11 H 0.10 2.78 6.96 -52.49 -0.37 2.41 16 12 C 0.09 2.64 4.90 -17.47 -0.09 2.55 16 13 N -0.87 -26.70 13.96 55.50 0.77 -25.92 16 14 Si 0.92 25.00 24.54 -169.99 -4.17 20.83 16 15 H -0.25 -7.13 6.10 56.52 0.34 -6.78 16 16 H -0.32 -8.55 7.11 56.52 0.40 -8.14 16 17 H -0.28 -7.38 7.11 56.52 0.40 -6.98 16 18 C 0.06 1.11 5.85 -67.93 -0.40 0.72 16 19 C -0.17 -2.86 9.80 -26.73 -0.26 -3.12 16 20 C -0.20 -3.29 10.37 -26.74 -0.28 -3.57 16 21 C -0.10 -1.64 9.49 -39.55 -0.38 -2.01 16 22 C -0.03 -0.53 6.31 -39.50 -0.25 -0.78 16 23 Cl -0.08 -1.12 27.30 -51.86 -1.42 -2.54 16 24 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 25 H 0.07 0.66 8.09 -51.93 -0.42 0.24 16 26 H 0.07 0.80 6.90 -51.93 -0.36 0.44 16 27 H 0.13 1.38 8.06 -52.48 -0.42 0.96 16 28 H 0.13 1.72 8.06 -52.49 -0.42 1.29 16 29 H 0.09 1.31 7.51 -51.93 -0.39 0.92 16 30 H 0.09 1.39 8.05 -51.93 -0.42 0.97 16 31 H 0.27 7.95 8.31 -40.82 -0.34 7.62 16 32 H 0.11 1.60 6.99 -51.93 -0.36 1.24 16 33 H 0.11 2.14 6.49 -51.93 -0.34 1.80 16 34 H 0.09 1.17 8.14 -51.93 -0.42 0.75 16 35 H 0.09 1.15 8.14 -51.92 -0.42 0.73 16 36 H 0.10 1.83 8.14 -51.93 -0.42 1.40 16 37 H 0.13 2.14 8.06 -52.48 -0.42 1.72 16 LS Contribution 320.69 15.07 4.83 4.83 Total: -1.00 -33.60 320.69 -8.46 -42.06 By element: Atomic # 1 Polarization: 5.62 SS G_CDS: -4.80 Total: 0.82 kcal Atomic # 6 Polarization: -11.69 SS G_CDS: -3.47 Total: -15.16 kcal Atomic # 7 Polarization: -36.87 SS G_CDS: 0.50 Total: -36.37 kcal Atomic # 8 Polarization: -14.54 SS G_CDS: 0.06 Total: -14.48 kcal Atomic # 14 Polarization: 25.00 SS G_CDS: -4.17 Total: 20.83 kcal Atomic # 17 Polarization: -1.12 SS G_CDS: -1.42 Total: -2.54 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -33.60 -8.46 -42.06 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930616462.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.005 kcal (2) G-P(sol) polarization free energy of solvation -33.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.060 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.945 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds