Wall clock time and date at job start Tue Mar 31 2020 06:41:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38234 * 120.00929 * 2 1 4 4 C 1.38220 * 120.01649 * 180.25641 * 3 2 1 5 5 C 1.38262 * 120.02279 * 359.74151 * 4 3 2 6 6 C 1.50704 * 119.99336 * 180.02562 * 5 4 3 7 7 C 1.50697 * 109.46955 * 270.02520 * 6 5 4 8 8 O 1.21286 * 120.00744 * 359.97438 * 7 6 5 9 9 N 1.34781 * 119.99284 * 179.97438 * 7 6 5 10 10 C 1.37103 * 119.99616 * 179.97438 * 9 7 6 11 11 H 1.07997 * 119.99926 * 140.10534 * 10 9 7 12 12 C 1.38947 * 120.00055 * 320.11134 * 10 9 7 13 13 N 1.31414 * 119.99863 * 161.87779 * 12 10 9 14 14 Si 1.86798 * 120.00190 * 341.88023 * 12 10 9 15 15 H 1.48502 * 109.47460 * 93.80969 * 14 12 10 16 16 H 1.48502 * 109.47153 * 213.80915 * 14 12 10 17 17 H 1.48500 * 109.47037 * 333.80798 * 14 12 10 18 18 C 1.46501 * 120.00536 * 0.02562 * 9 7 6 19 19 C 1.53000 * 117.49828 * 182.28392 * 18 9 7 20 20 C 1.52995 * 59.99907 * 252.51043 * 19 18 9 21 21 C 1.38197 * 120.01287 * 0.02627 * 5 4 3 22 22 C 1.38329 * 120.00296 * 179.76634 * 2 1 3 23 23 Cl 1.73593 * 120.01513 * 0.02570 * 22 2 1 24 24 H 1.08997 * 109.47146 * 270.23723 * 1 2 3 25 25 H 1.09004 * 109.46697 * 30.23041 * 1 2 3 26 26 H 1.08997 * 109.47236 * 150.22837 * 1 2 3 27 27 H 1.08009 * 119.99229 * 359.97438 * 3 2 1 28 28 H 1.08002 * 119.98834 * 179.72224 * 4 3 2 29 29 H 1.09002 * 109.46994 * 30.02634 * 6 5 4 30 30 H 1.08999 * 109.46911 * 150.01855 * 6 5 4 31 31 H 0.97005 * 119.99865 * 179.97438 * 13 12 10 32 32 H 1.08996 * 115.54570 * 327.99015 * 18 9 7 33 33 H 1.09000 * 117.49914 * 0.02562 * 19 18 9 34 34 H 1.09004 * 117.49632 * 145.01871 * 19 18 9 35 35 H 1.09007 * 117.49910 * 252.50918 * 20 19 18 36 36 H 1.09002 * 117.51758 * 107.48549 * 20 19 18 37 37 H 1.08003 * 120.00153 * 180.02562 * 21 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1970 0.0000 4 6 3.5806 1.1972 -0.0054 5 6 4.2725 0.0002 -0.0053 6 6 5.7796 0.0012 -0.0106 7 6 6.2769 -0.0008 -1.4331 8 8 5.4856 -0.0033 -2.3523 9 7 7.6012 0.0002 -1.6839 10 6 8.0537 -0.0021 -2.9781 11 1 8.9086 0.5981 -3.2523 12 6 7.4124 -0.7767 -3.9369 13 7 7.5950 -0.5257 -5.2139 14 14 6.2905 -2.1746 -3.4109 15 1 4.8896 -1.6866 -3.3436 16 1 6.3824 -3.2809 -4.3973 17 1 6.7078 -2.6677 -2.0738 18 6 8.5570 0.0026 -0.5737 19 6 10.0456 0.0577 -0.9232 20 6 9.4320 -1.2393 -0.3921 21 6 3.5825 -1.1972 -0.0005 22 6 2.1988 -1.1979 0.0049 23 17 1.3313 -2.7015 0.0103 24 1 -0.3633 0.0043 1.0276 25 1 -0.3633 0.8880 -0.5174 26 1 -0.3633 -0.8920 -0.5103 27 1 1.6584 2.1324 -0.0004 28 1 4.1203 2.1327 -0.0099 29 1 6.1441 0.8922 0.5006 30 1 6.1452 -0.8877 0.5035 31 1 7.1475 -1.0667 -5.8833 32 1 8.2313 0.5247 0.3259 33 1 10.3136 0.0926 -1.9792 34 1 10.6994 0.6163 -0.2535 35 1 9.6822 -1.5341 0.6271 36 1 9.2962 -2.0584 -1.0984 37 1 4.1232 -2.1321 0.0000 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000930616462.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:41:37 Heat of formation + Delta-G solvation = -0.030158 kcal Electronic energy + Delta-G solvation = -21310.710978 eV Core-core repulsion = 18079.285207 eV Total energy + Delta-G solvation = -3231.425771 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 293.092 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.25839 -40.17781 -38.06994 -37.46065 -35.12117 -34.54144 -33.40913 -31.72598 -30.83280 -27.53262 -25.70588 -23.82729 -23.43626 -22.94837 -22.11412 -20.97146 -18.96861 -17.88201 -17.54502 -17.16519 -16.87310 -16.31370 -15.85140 -15.80596 -15.22228 -15.01124 -14.74761 -14.71185 -14.63915 -13.83727 -13.58502 -13.52132 -13.29479 -12.99480 -12.82631 -12.59062 -12.37072 -12.27566 -12.20216 -12.14908 -11.99591 -11.71002 -11.57900 -11.19521 -10.73363 -10.43066 -9.80023 -9.47860 -9.37823 -8.42516 -6.16036 0.18464 0.28090 1.11176 1.17464 1.27850 1.50372 1.93057 2.41971 2.47361 2.82626 2.96268 3.24799 3.64461 3.77839 3.95678 4.01050 4.10879 4.17265 4.22170 4.28353 4.35383 4.45485 4.60986 4.67999 4.77135 4.78978 4.89782 4.90789 5.02487 5.17278 5.25107 5.26733 5.42828 5.47233 5.54470 5.68502 5.83474 5.89345 6.75322 6.89887 7.35205 7.87651 8.64417 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.018569 B = 0.005381 C = 0.004955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1507.540294 B = 5202.246688 C = 5648.985052 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.089 4.089 3 C -0.108 4.108 4 C -0.103 4.103 5 C -0.065 4.065 6 C -0.087 4.087 7 C 0.444 3.556 8 O -0.580 6.580 9 N -0.453 5.453 10 C -0.333 4.333 11 H 0.073 0.927 12 C 0.040 3.960 13 N -0.914 5.914 14 Si 0.968 3.032 15 H -0.275 1.275 16 H -0.321 1.321 17 H -0.267 1.267 18 C 0.044 3.956 19 C -0.170 4.170 20 C -0.187 4.187 21 C -0.117 4.117 22 C -0.052 4.052 23 Cl -0.073 7.073 24 H 0.090 0.910 25 H 0.086 0.914 26 H 0.065 0.935 27 H 0.161 0.839 28 H 0.144 0.856 29 H 0.134 0.866 30 H 0.112 0.888 31 H 0.270 0.730 32 H 0.159 0.841 33 H 0.072 0.928 34 H 0.130 0.870 35 H 0.133 0.867 36 H 0.062 0.938 37 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.186 1.499 18.289 20.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.090 4.090 3 C -0.126 4.126 4 C -0.121 4.121 5 C -0.066 4.066 6 C -0.126 4.126 7 C 0.236 3.764 8 O -0.465 6.465 9 N -0.174 5.174 10 C -0.460 4.460 11 H 0.091 0.909 12 C -0.163 4.163 13 N -0.553 5.553 14 Si 0.801 3.199 15 H -0.202 1.202 16 H -0.252 1.252 17 H -0.192 1.192 18 C -0.060 4.060 19 C -0.207 4.207 20 C -0.226 4.226 21 C -0.136 4.136 22 C -0.078 4.078 23 Cl -0.044 7.044 24 H 0.109 0.891 25 H 0.105 0.895 26 H 0.084 0.916 27 H 0.179 0.821 28 H 0.162 0.838 29 H 0.152 0.848 30 H 0.130 0.870 31 H 0.079 0.921 32 H 0.176 0.824 33 H 0.091 0.909 34 H 0.148 0.852 35 H 0.151 0.849 36 H 0.081 0.919 37 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -8.654 1.346 17.660 19.713 hybrid contribution -0.150 -1.099 -0.913 1.437 sum -8.804 0.247 16.747 18.922 Atomic orbital electron populations 1.20889 0.88407 1.03873 1.03821 1.20112 0.98167 0.91039 0.99683 1.21301 0.93748 0.98011 0.99553 1.21380 0.94957 0.97888 0.97894 1.19470 0.94890 0.93113 0.99085 1.20684 0.91741 1.06975 0.93231 1.21168 0.82542 0.80634 0.92078 1.90510 1.55216 1.53130 1.47660 1.43365 1.03983 1.65070 1.04954 1.18683 1.16689 1.26880 0.83737 0.90903 1.25904 0.97061 0.98741 0.94585 1.69818 1.44501 1.39587 1.01348 0.85430 0.81042 0.76322 0.77095 1.20224 1.25227 1.19230 1.22308 0.88168 1.03357 0.92161 1.23150 0.94428 1.01019 1.02104 1.23321 1.04600 0.91738 1.02908 1.20966 0.92701 0.98782 1.01179 1.20880 0.92067 0.87311 1.07569 1.98322 1.76641 1.32443 1.97031 0.89129 0.89530 0.91616 0.82111 0.83829 0.84804 0.86971 0.92108 0.82351 0.90908 0.85170 0.84871 0.91946 0.86275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.16 9.62 71.24 0.68 -1.48 16 2 C -0.09 -2.32 5.88 -19.84 -0.12 -2.44 16 3 C -0.11 -2.65 9.70 22.26 0.22 -2.44 16 4 C -0.10 -2.88 9.70 22.27 0.22 -2.66 16 5 C -0.06 -2.08 4.37 -19.87 -0.09 -2.17 16 6 C -0.09 -2.69 4.46 29.10 0.13 -2.56 16 7 C 0.44 19.94 5.87 87.66 0.51 20.45 16 8 O -0.58 -31.93 10.89 -3.05 -0.03 -31.97 16 9 N -0.45 -20.72 2.56 -613.15 -1.57 -22.29 16 10 C -0.33 -18.84 8.76 84.04 0.74 -18.10 16 11 H 0.07 4.38 6.96 -2.91 -0.02 4.36 16 12 C 0.04 2.47 4.90 84.93 0.42 2.89 16 13 N -0.91 -58.84 13.96 21.66 0.30 -58.54 16 14 Si 0.97 53.53 24.54 68.60 1.68 55.22 16 15 H -0.27 -16.26 6.10 99.48 0.61 -15.65 16 16 H -0.32 -17.65 7.11 99.48 0.71 -16.94 16 17 H -0.27 -13.67 7.11 99.48 0.71 -12.96 16 18 C 0.04 1.44 5.85 44.99 0.26 1.70 16 19 C -0.17 -5.21 9.80 30.59 0.30 -4.91 16 20 C -0.19 -5.58 10.37 30.59 0.32 -5.26 16 21 C -0.12 -3.92 9.49 22.29 0.21 -3.71 16 22 C -0.05 -1.57 6.31 22.32 0.14 -1.43 16 23 Cl -0.07 -2.01 27.30 -2.72 -0.07 -2.09 16 24 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 25 H 0.09 1.35 8.09 -2.38 -0.02 1.33 16 26 H 0.06 1.34 6.90 -2.39 -0.02 1.32 16 27 H 0.16 2.80 8.06 -2.91 -0.02 2.77 16 28 H 0.14 3.41 8.06 -2.91 -0.02 3.39 16 29 H 0.13 3.05 7.51 -2.39 -0.02 3.03 16 30 H 0.11 3.01 8.05 -2.39 -0.02 2.99 16 31 H 0.27 16.59 8.31 -92.70 -0.77 15.82 16 32 H 0.16 3.65 6.99 -2.39 -0.02 3.63 16 33 H 0.07 2.82 6.49 -2.39 -0.02 2.81 16 34 H 0.13 2.89 8.14 -2.39 -0.02 2.87 16 35 H 0.13 2.77 8.14 -2.38 -0.02 2.75 16 36 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 37 H 0.12 3.99 8.06 -2.91 -0.02 3.97 16 Total: -1.00 -77.87 320.69 5.23 -72.64 By element: Atomic # 1 Polarization: 8.16 SS G_CDS: 0.98 Total: 9.14 kcal Atomic # 6 Polarization: -26.06 SS G_CDS: 3.94 Total: -22.12 kcal Atomic # 7 Polarization: -79.56 SS G_CDS: -1.27 Total: -80.83 kcal Atomic # 8 Polarization: -31.93 SS G_CDS: -0.03 Total: -31.97 kcal Atomic # 14 Polarization: 53.53 SS G_CDS: 1.68 Total: 55.22 kcal Atomic # 17 Polarization: -2.01 SS G_CDS: -0.07 Total: -2.09 kcal Total: -77.87 5.23 -72.64 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930616462.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.613 kcal (2) G-P(sol) polarization free energy of solvation -77.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.644 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds