Wall clock time and date at job start Tue Mar 31 2020 06:57:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.30893 * 125.14909 * 2 1 4 4 N 1.37155 * 116.61542 * 180.02562 * 3 2 1 5 5 C 1.35372 * 113.82855 * 359.97438 * 4 3 2 6 6 N 1.33049 * 121.33933 * 179.71994 * 5 4 3 7 7 C 1.32422 * 121.90689 * 0.57965 * 6 5 4 8 8 C 1.50703 * 120.26065 * 179.70811 * 7 6 5 9 9 N 1.46899 * 109.47107 * 294.72320 * 8 7 6 10 10 C 1.46904 * 111.00029 * 179.97438 * 9 8 7 11 11 H 1.08998 * 109.46835 * 325.00273 * 10 9 8 12 12 C 1.52997 * 109.46874 * 85.00270 * 10 9 8 13 13 C 1.50699 * 109.46851 * 204.99994 * 10 9 8 14 14 H 1.07998 * 120.00472 * 0.02562 * 13 10 9 15 15 C 1.37879 * 119.99705 * 180.02562 * 13 10 9 16 16 N 1.31516 * 119.99689 * 0.02562 * 15 13 10 17 17 Si 1.86794 * 120.00273 * 180.02562 * 15 13 10 18 18 H 1.48505 * 109.46883 * 0.02562 * 17 15 13 19 19 H 1.48503 * 109.47106 * 119.99879 * 17 15 13 20 20 H 1.48500 * 109.47397 * 240.00177 * 17 15 13 21 21 C 1.37875 * 119.47786 * 359.43227 * 7 6 5 22 22 C 1.36341 * 127.31532 * 180.02562 * 4 3 2 23 23 O 1.22103 * 120.19512 * 0.02562 * 22 4 3 24 24 S 1.75721 * 125.15057 * 179.97438 * 2 1 3 25 25 H 1.08998 * 109.47433 * 90.00546 * 1 2 3 26 26 H 1.09004 * 109.47196 * 210.00626 * 1 2 3 27 27 H 1.09003 * 109.47222 * 330.00157 * 1 2 3 28 28 H 1.08000 * 121.69404 * 359.97184 * 3 2 1 29 29 H 1.09002 * 109.47152 * 174.72407 * 8 7 6 30 30 H 1.09001 * 109.46980 * 54.72507 * 8 7 6 31 31 H 1.00908 * 110.99847 * 56.05051 * 9 8 7 32 32 H 1.09007 * 109.47004 * 300.00081 * 12 10 9 33 33 H 1.09007 * 109.47280 * 59.99720 * 12 10 9 34 34 H 1.08997 * 109.47489 * 179.97438 * 12 10 9 35 35 H 0.97006 * 119.99890 * 179.97438 * 16 15 13 36 36 H 1.07997 * 120.59701 * 180.29430 * 21 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2605 1.0703 0.0000 4 7 3.6169 0.8667 -0.0005 5 6 3.9740 -0.4390 -0.0005 6 7 5.2526 -0.8068 -0.0065 7 6 6.2360 0.0801 -0.0015 8 6 7.6717 -0.3779 -0.0020 9 7 7.9609 -1.0842 1.2532 10 6 9.3547 -1.5468 1.2879 11 1 9.6659 -1.8383 0.2848 12 6 10.2545 -0.4171 1.7929 13 6 9.4680 -2.7309 2.2132 14 1 8.5922 -3.1029 2.7239 15 6 10.6899 -3.3394 2.4076 16 7 11.7566 -2.8860 1.7860 17 14 10.8304 -4.8076 3.5539 18 1 9.4955 -5.1190 4.1252 19 1 11.3296 -5.9822 2.7947 20 1 11.7775 -4.4892 4.6524 21 6 5.9360 1.4258 -0.0016 22 6 4.5952 1.8164 -0.0002 23 8 4.3007 3.0014 0.0012 24 16 2.5186 -1.4368 0.0006 25 1 -0.3634 -0.0001 -1.0276 26 1 -0.3634 -0.8899 0.5139 27 1 -0.3634 0.8900 0.5138 28 1 1.8358 2.0632 -0.0005 29 1 8.3290 0.4870 -0.0920 30 1 7.8384 -1.0500 -0.8438 31 1 7.3216 -1.8527 1.3912 32 1 10.1725 0.4395 1.1237 33 1 9.9433 -0.1255 2.7961 34 1 11.2887 -0.7604 1.8192 35 1 12.6163 -3.3138 1.9231 36 1 6.7237 2.1646 -0.0023 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000930866190.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:57:53 Heat of formation + Delta-G solvation = 38.212500 kcal Electronic energy + Delta-G solvation = -20378.771096 eV Core-core repulsion = 17183.340108 eV Total energy + Delta-G solvation = -3195.430988 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 293.094 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.41675 -38.02208 -37.82980 -35.72314 -33.60010 -32.38865 -31.00613 -29.25320 -27.68857 -26.04063 -25.49099 -24.70787 -21.93438 -21.48174 -19.82721 -19.03923 -18.33427 -17.45119 -16.80344 -16.50362 -15.43090 -14.96294 -14.56011 -14.50317 -14.29540 -14.09653 -13.71158 -13.58911 -13.36505 -13.26018 -12.93617 -12.33981 -12.06393 -11.85417 -11.63042 -11.22656 -10.92638 -10.75446 -10.47154 -10.31447 -10.20345 -10.14793 -10.14144 -9.89954 -9.40399 -8.83903 -8.48977 -7.81458 -7.36952 -6.03847 -4.10046 0.02925 0.34890 1.09373 1.10778 1.77341 2.07950 3.29104 3.36920 3.41285 3.47131 4.00028 4.06513 4.39361 4.43024 4.58132 4.87254 4.99298 5.02171 5.27334 5.30981 5.42222 5.46106 5.49584 5.69479 5.94512 6.06244 6.20121 6.32688 6.84452 7.11517 7.18591 7.43934 7.53766 7.60734 7.76909 7.86421 8.24716 8.32026 8.60385 8.99239 9.55830 11.02587 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.022961 B = 0.003545 C = 0.003155 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1219.144740 B = 7897.574025 C = 8872.900459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.206 4.206 3 C 0.057 3.943 4 N -0.458 5.458 5 C 0.300 3.700 6 N -0.500 5.500 7 C 0.233 3.767 8 C 0.105 3.895 9 N -0.680 5.680 10 C 0.211 3.789 11 H 0.005 0.995 12 C -0.126 4.126 13 C -0.517 4.517 14 H 0.061 0.939 15 C 0.062 3.938 16 N -0.890 5.890 17 Si 0.898 3.102 18 H -0.273 1.273 19 H -0.285 1.285 20 H -0.284 1.284 21 C -0.301 4.301 22 C 0.527 3.473 23 O -0.535 6.535 24 S 0.207 5.793 25 H 0.083 0.917 26 H 0.079 0.921 27 H 0.084 0.916 28 H 0.189 0.811 29 H 0.091 0.909 30 H 0.051 0.949 31 H 0.340 0.660 32 H 0.005 0.995 33 H 0.032 0.968 34 H 0.082 0.918 35 H 0.261 0.739 36 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.894 4.406 -5.893 23.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.325 4.325 3 C -0.070 4.070 4 N -0.169 5.169 5 C -0.067 4.067 6 N -0.227 5.227 7 C 0.105 3.895 8 C -0.025 4.025 9 N -0.313 5.313 10 C 0.104 3.896 11 H 0.022 0.978 12 C -0.185 4.185 13 C -0.556 4.556 14 H 0.079 0.921 15 C -0.140 4.140 16 N -0.529 5.529 17 Si 0.725 3.275 18 H -0.197 1.197 19 H -0.211 1.211 20 H -0.210 1.210 21 C -0.330 4.330 22 C 0.332 3.668 23 O -0.415 6.415 24 S 0.458 5.542 25 H 0.102 0.898 26 H 0.098 0.902 27 H 0.103 0.897 28 H 0.206 0.794 29 H 0.109 0.891 30 H 0.069 0.931 31 H 0.158 0.842 32 H 0.024 0.976 33 H 0.051 0.949 34 H 0.101 0.899 35 H 0.071 0.929 36 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -21.630 3.589 -5.563 22.620 hybrid contribution 0.342 0.749 0.033 0.824 sum -21.287 4.338 -5.530 22.418 Atomic orbital electron populations 1.20306 0.85003 1.04218 1.03729 1.23882 1.01878 0.94912 1.11862 1.20685 0.81261 1.02322 1.02752 1.45219 1.07809 1.08711 1.55149 1.26115 0.99167 0.84871 0.96597 1.67995 0.94547 1.36062 1.24062 1.21706 0.95183 0.88826 0.83811 1.20967 0.86673 1.00268 0.94627 1.60879 1.07992 1.32705 1.29683 1.19168 0.81817 0.92806 0.95766 0.97759 1.21744 1.02929 0.95720 0.98088 1.21274 0.94679 1.12651 1.26995 0.92073 1.24912 0.95694 0.97399 0.95986 1.69906 0.99445 1.40804 1.42697 0.86448 0.78147 0.82277 0.80581 1.19715 1.21071 1.20983 1.22588 0.94366 0.97793 1.18222 1.17366 0.85368 0.84973 0.79115 1.90957 1.82808 1.15165 1.52524 1.85323 0.87343 1.02545 1.78997 0.89816 0.90186 0.89691 0.79444 0.89088 0.93109 0.84170 0.97561 0.94855 0.89932 0.92945 0.81782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.27 10.36 36.00 0.37 0.10 16 2 C -0.21 -1.55 6.42 -36.00 -0.23 -1.78 16 3 C 0.06 0.56 10.31 -16.86 -0.17 0.39 16 4 N -0.46 -6.27 2.82 -66.36 -0.19 -6.46 16 5 C 0.30 4.11 8.32 -87.91 -0.73 3.38 16 6 N -0.50 -8.09 10.27 -9.01 -0.09 -8.18 16 7 C 0.23 3.90 6.34 -82.47 -0.52 3.37 16 8 C 0.10 1.89 5.89 -4.98 -0.03 1.86 16 9 N -0.68 -14.66 6.29 -109.22 -0.69 -15.35 16 10 C 0.21 5.31 2.60 -68.86 -0.18 5.13 16 11 H 0.00 0.13 7.80 -51.93 -0.40 -0.28 16 12 C -0.13 -3.12 9.19 37.16 0.34 -2.78 16 13 C -0.52 -14.16 8.59 -34.44 -0.30 -14.46 16 14 H 0.06 1.66 7.62 -52.49 -0.40 1.26 16 15 C 0.06 1.70 5.30 -17.82 -0.09 1.61 16 16 N -0.89 -25.23 11.32 55.43 0.63 -24.60 16 17 Si 0.90 21.21 29.54 -169.99 -5.02 16.19 16 18 H -0.27 -6.37 7.11 56.52 0.40 -5.96 16 19 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 20 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 21 C -0.30 -4.86 9.67 -39.19 -0.38 -5.24 16 22 C 0.53 8.63 7.51 -15.02 -0.11 8.52 16 23 O -0.54 -9.85 17.46 4.82 0.08 -9.77 16 24 S 0.21 1.93 23.36 -107.50 -2.51 -0.59 16 25 H 0.08 0.22 8.14 -51.93 -0.42 -0.20 16 26 H 0.08 0.23 8.14 -51.93 -0.42 -0.20 16 27 H 0.08 0.22 8.14 -51.93 -0.42 -0.20 16 28 H 0.19 1.55 8.00 -52.49 -0.42 1.13 16 29 H 0.09 1.56 7.21 -51.93 -0.37 1.19 16 30 H 0.05 0.91 8.05 -51.93 -0.42 0.49 16 31 H 0.34 7.40 8.14 -39.29 -0.32 7.08 16 32 H 0.01 0.12 7.45 -51.92 -0.39 -0.27 16 33 H 0.03 0.82 8.14 -51.93 -0.42 0.39 16 34 H 0.08 2.21 6.07 -51.93 -0.32 1.90 16 35 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 36 H 0.16 2.46 7.98 -52.49 -0.42 2.04 16 LS Contribution 322.09 15.07 4.85 4.85 Total: -1.00 -32.02 322.09 -9.25 -41.27 By element: Atomic # 1 Polarization: 6.80 SS G_CDS: -4.28 Total: 2.52 kcal Atomic # 6 Polarization: 2.15 SS G_CDS: -2.04 Total: 0.11 kcal Atomic # 7 Polarization: -54.25 SS G_CDS: -0.34 Total: -54.59 kcal Atomic # 8 Polarization: -9.85 SS G_CDS: 0.08 Total: -9.77 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Atomic # 16 Polarization: 1.93 SS G_CDS: -2.51 Total: -0.59 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -32.02 -9.25 -41.27 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930866190.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.481 kcal (2) G-P(sol) polarization free energy of solvation -32.015 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.465 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.268 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds