Wall clock time and date at job start Tue Mar 31 2020 06:57:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.30893 * 125.14909 * 2 1 4 4 N 1.37155 * 116.61542 * 180.02562 * 3 2 1 5 5 C 1.35372 * 113.82855 * 359.97438 * 4 3 2 6 6 N 1.33049 * 121.33933 * 179.71994 * 5 4 3 7 7 C 1.32422 * 121.90689 * 0.57965 * 6 5 4 8 8 C 1.50703 * 120.26065 * 179.70811 * 7 6 5 9 9 N 1.46899 * 109.47107 * 294.72320 * 8 7 6 10 10 C 1.46904 * 111.00029 * 179.97438 * 9 8 7 11 11 H 1.08998 * 109.46835 * 325.00273 * 10 9 8 12 12 C 1.52997 * 109.46874 * 85.00270 * 10 9 8 13 13 C 1.50699 * 109.46851 * 204.99994 * 10 9 8 14 14 H 1.07998 * 120.00472 * 0.02562 * 13 10 9 15 15 C 1.37879 * 119.99705 * 180.02562 * 13 10 9 16 16 N 1.31516 * 119.99689 * 0.02562 * 15 13 10 17 17 Si 1.86794 * 120.00273 * 180.02562 * 15 13 10 18 18 H 1.48505 * 109.46883 * 0.02562 * 17 15 13 19 19 H 1.48503 * 109.47106 * 119.99879 * 17 15 13 20 20 H 1.48500 * 109.47397 * 240.00177 * 17 15 13 21 21 C 1.37875 * 119.47786 * 359.43227 * 7 6 5 22 22 C 1.36341 * 127.31532 * 180.02562 * 4 3 2 23 23 O 1.22103 * 120.19512 * 0.02562 * 22 4 3 24 24 S 1.75721 * 125.15057 * 179.97438 * 2 1 3 25 25 H 1.08998 * 109.47433 * 90.00546 * 1 2 3 26 26 H 1.09004 * 109.47196 * 210.00626 * 1 2 3 27 27 H 1.09003 * 109.47222 * 330.00157 * 1 2 3 28 28 H 1.08000 * 121.69404 * 359.97184 * 3 2 1 29 29 H 1.09002 * 109.47152 * 174.72407 * 8 7 6 30 30 H 1.09001 * 109.46980 * 54.72507 * 8 7 6 31 31 H 1.00908 * 110.99847 * 56.05051 * 9 8 7 32 32 H 1.09007 * 109.47004 * 300.00081 * 12 10 9 33 33 H 1.09007 * 109.47280 * 59.99720 * 12 10 9 34 34 H 1.08997 * 109.47489 * 179.97438 * 12 10 9 35 35 H 0.97006 * 119.99890 * 179.97438 * 16 15 13 36 36 H 1.07997 * 120.59701 * 180.29430 * 21 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2605 1.0703 0.0000 4 7 3.6169 0.8667 -0.0005 5 6 3.9740 -0.4390 -0.0005 6 7 5.2526 -0.8068 -0.0065 7 6 6.2360 0.0801 -0.0015 8 6 7.6717 -0.3779 -0.0020 9 7 7.9609 -1.0842 1.2532 10 6 9.3547 -1.5468 1.2879 11 1 9.6659 -1.8383 0.2848 12 6 10.2545 -0.4171 1.7929 13 6 9.4680 -2.7309 2.2132 14 1 8.5922 -3.1029 2.7239 15 6 10.6899 -3.3394 2.4076 16 7 11.7566 -2.8860 1.7860 17 14 10.8304 -4.8076 3.5539 18 1 9.4955 -5.1190 4.1252 19 1 11.3296 -5.9822 2.7947 20 1 11.7775 -4.4892 4.6524 21 6 5.9360 1.4258 -0.0016 22 6 4.5952 1.8164 -0.0002 23 8 4.3007 3.0014 0.0012 24 16 2.5186 -1.4368 0.0006 25 1 -0.3634 -0.0001 -1.0276 26 1 -0.3634 -0.8899 0.5139 27 1 -0.3634 0.8900 0.5138 28 1 1.8358 2.0632 -0.0005 29 1 8.3290 0.4870 -0.0920 30 1 7.8384 -1.0500 -0.8438 31 1 7.3216 -1.8527 1.3912 32 1 10.1725 0.4395 1.1237 33 1 9.9433 -0.1255 2.7961 34 1 11.2887 -0.7604 1.8192 35 1 12.6163 -3.3138 1.9231 36 1 6.7237 2.1646 -0.0023 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000930866190.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:57:53 Heat of formation + Delta-G solvation = 17.290004 kcal Electronic energy + Delta-G solvation = -20379.678364 eV Core-core repulsion = 17183.340108 eV Total energy + Delta-G solvation = -3196.338255 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 293.094 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -43.49456 -39.15101 -39.07415 -37.38866 -34.85060 -33.89602 -32.30596 -30.81399 -28.70439 -27.40798 -27.10317 -26.22148 -23.23883 -22.31939 -21.74444 -20.00064 -19.49882 -18.79931 -18.15967 -17.89063 -16.87709 -16.63122 -16.09137 -15.51354 -15.42529 -15.26627 -14.99388 -14.90935 -14.37812 -14.19826 -14.07848 -13.63611 -13.43012 -13.16606 -13.03062 -12.78303 -12.59785 -12.35557 -12.25759 -12.18591 -11.97651 -11.54735 -11.24775 -11.00855 -10.87360 -10.58913 -10.44714 -9.14461 -8.82648 -8.12683 -6.26399 -1.05202 -0.58053 0.16229 0.30415 0.68784 1.09073 1.42862 1.44715 1.56591 2.26003 2.43609 2.84756 3.07955 3.16362 3.48367 3.80873 3.90629 4.00457 4.18088 4.28675 4.55346 4.58221 4.72239 4.77819 4.80997 4.85903 5.04142 5.10211 5.16444 5.20452 5.24747 5.45763 5.66505 5.85403 6.22508 6.35545 6.40743 6.43846 6.69734 6.95093 7.43521 8.93215 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.022961 B = 0.003545 C = 0.003155 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1219.144740 B = 7897.574025 C = 8872.900459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C -0.169 4.169 3 C 0.017 3.983 4 N -0.455 5.455 5 C 0.278 3.722 6 N -0.530 5.530 7 C 0.236 3.764 8 C 0.109 3.891 9 N -0.679 5.679 10 C 0.216 3.784 11 H -0.021 1.021 12 C -0.116 4.116 13 C -0.538 4.538 14 H 0.057 0.943 15 C 0.015 3.985 16 N -0.916 5.916 17 Si 0.963 3.037 18 H -0.267 1.267 19 H -0.279 1.279 20 H -0.280 1.280 21 C -0.318 4.318 22 C 0.521 3.479 23 O -0.568 6.568 24 S 0.265 5.735 25 H 0.104 0.896 26 H 0.097 0.903 27 H 0.102 0.898 28 H 0.202 0.798 29 H 0.097 0.903 30 H 0.050 0.950 31 H 0.338 0.662 32 H 0.027 0.973 33 H 0.026 0.974 34 H 0.059 0.941 35 H 0.263 0.737 36 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.853 3.375 -5.643 25.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.287 4.287 3 C -0.107 4.107 4 N -0.164 5.164 5 C -0.086 4.086 6 N -0.258 5.258 7 C 0.105 3.895 8 C -0.021 4.021 9 N -0.311 5.311 10 C 0.108 3.892 11 H -0.003 1.003 12 C -0.175 4.175 13 C -0.576 4.576 14 H 0.076 0.924 15 C -0.185 4.185 16 N -0.555 5.555 17 Si 0.788 3.212 18 H -0.192 1.192 19 H -0.205 1.205 20 H -0.206 1.206 21 C -0.347 4.347 22 C 0.327 3.673 23 O -0.450 6.450 24 S 0.517 5.483 25 H 0.122 0.878 26 H 0.115 0.885 27 H 0.121 0.879 28 H 0.219 0.781 29 H 0.116 0.884 30 H 0.068 0.932 31 H 0.156 0.844 32 H 0.046 0.954 33 H 0.045 0.955 34 H 0.078 0.922 35 H 0.072 0.928 36 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -24.665 2.542 -5.320 25.360 hybrid contribution 0.999 0.973 -0.095 1.398 sum -23.665 3.514 -5.415 24.530 Atomic orbital electron populations 1.20615 0.81536 1.05938 1.05538 1.24522 1.03552 0.93279 1.07389 1.21059 0.79720 1.04006 1.05942 1.45148 1.09035 1.08288 1.53958 1.26877 0.99822 0.85878 0.96066 1.67934 0.95546 1.36265 1.26059 1.21373 0.94661 0.89051 0.84377 1.20909 0.88233 0.99942 0.92984 1.60748 1.06103 1.32276 1.31948 1.18970 0.83749 0.92516 0.93927 1.00318 1.21579 1.01362 0.96317 0.98202 1.21577 0.94810 1.13703 1.27517 0.92434 1.25706 0.95347 1.00025 0.97398 1.70023 0.99855 1.41940 1.43719 0.85433 0.78200 0.78965 0.78572 1.19162 1.20473 1.20629 1.22578 0.94898 0.97686 1.19582 1.17308 0.85909 0.84932 0.79146 1.90921 1.83398 1.16218 1.54457 1.85275 0.84650 1.02001 1.76382 0.87752 0.88468 0.87902 0.78078 0.88443 0.93205 0.84434 0.95384 0.95474 0.92184 0.92773 0.81555 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.20 10.36 71.23 0.74 0.54 16 2 C -0.17 -1.94 6.42 25.75 0.17 -1.78 16 3 C 0.02 0.31 10.31 83.93 0.87 1.18 16 4 N -0.46 -12.20 2.82 -481.03 -1.36 -13.56 16 5 C 0.28 7.41 8.32 179.40 1.49 8.90 16 6 N -0.53 -17.21 10.27 -182.42 -1.87 -19.08 16 7 C 0.24 8.07 6.34 42.38 0.27 8.34 16 8 C 0.11 4.04 5.89 85.56 0.50 4.54 16 9 N -0.68 -29.84 6.29 -499.46 -3.14 -32.98 16 10 C 0.22 11.10 2.60 44.17 0.11 11.22 16 11 H -0.02 -1.15 7.80 -2.39 -0.02 -1.17 16 12 C -0.12 -5.82 9.19 71.98 0.66 -5.16 16 13 C -0.54 -29.81 8.59 25.60 0.22 -29.59 16 14 H 0.06 3.16 7.62 -2.91 -0.02 3.13 16 15 C 0.01 0.81 5.30 84.65 0.45 1.26 16 16 N -0.92 -52.61 11.32 21.45 0.24 -52.37 16 17 Si 0.96 43.55 29.54 68.60 2.03 45.57 16 18 H -0.27 -11.75 7.11 99.48 0.71 -11.05 16 19 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 20 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 21 C -0.32 -10.62 9.67 22.53 0.22 -10.40 16 22 C 0.52 17.41 7.51 84.33 0.63 18.04 16 23 O -0.57 -21.39 17.46 -5.65 -0.10 -21.49 16 24 S 0.27 4.17 23.36 -56.49 -1.32 2.85 16 25 H 0.10 0.00 8.14 -2.39 -0.02 -0.02 16 26 H 0.10 0.02 8.14 -2.39 -0.02 0.01 16 27 H 0.10 0.04 8.14 -2.39 -0.02 0.02 16 28 H 0.20 2.98 8.00 -2.91 -0.02 2.96 16 29 H 0.10 3.42 7.21 -2.39 -0.02 3.40 16 30 H 0.05 1.85 8.05 -2.39 -0.02 1.83 16 31 H 0.34 14.99 8.14 -89.69 -0.73 14.26 16 32 H 0.03 1.23 7.45 -2.38 -0.02 1.21 16 33 H 0.03 1.34 8.14 -2.38 -0.02 1.32 16 34 H 0.06 3.28 6.07 -2.39 -0.01 3.27 16 35 H 0.26 14.28 8.31 -92.70 -0.77 13.51 16 36 H 0.17 5.23 7.98 -2.91 -0.02 5.21 16 Total: -1.00 -70.63 322.09 1.20 -69.44 By element: Atomic # 1 Polarization: 14.14 SS G_CDS: 0.39 Total: 14.53 kcal Atomic # 6 Polarization: 0.76 SS G_CDS: 6.33 Total: 7.09 kcal Atomic # 7 Polarization: -111.85 SS G_CDS: -6.13 Total: -117.98 kcal Atomic # 8 Polarization: -21.39 SS G_CDS: -0.10 Total: -21.49 kcal Atomic # 14 Polarization: 43.55 SS G_CDS: 2.03 Total: 45.57 kcal Atomic # 16 Polarization: 4.17 SS G_CDS: -1.32 Total: 2.85 kcal Total: -70.63 1.20 -69.44 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930866190.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.727 kcal (2) G-P(sol) polarization free energy of solvation -70.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.437 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds