Wall clock time and date at job start Tue Mar 31 2020 07:03:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.46935 * 2 1 4 4 C 1.53003 * 109.47015 * 119.99925 * 2 1 3 5 5 C 1.50697 * 109.46994 * 175.00335 * 4 2 1 6 6 N 1.29381 * 124.70314 * 89.97690 * 5 4 2 7 7 C 1.30946 * 117.46298 * 180.02562 * 6 5 4 8 8 C 1.36773 * 113.92404 * 359.97438 * 7 6 5 9 9 C 1.46566 * 126.17526 * 180.02562 * 8 7 6 10 10 O 1.21723 * 120.00051 * 2.79634 * 9 8 7 11 11 N 1.34775 * 119.99393 * 182.79465 * 9 8 7 12 12 C 1.36895 * 119.99546 * 186.33723 * 11 9 8 13 13 H 1.08003 * 120.00271 * 339.60527 * 12 11 9 14 14 C 1.39007 * 120.00003 * 159.60929 * 12 11 9 15 15 N 1.31395 * 119.99958 * 342.82154 * 14 12 11 16 16 Si 1.86798 * 120.00322 * 162.82164 * 14 12 11 17 17 H 1.48501 * 109.47036 * 59.99741 * 16 14 12 18 18 H 1.48501 * 109.47514 * 179.97438 * 16 14 12 19 19 H 1.48503 * 109.46970 * 300.00029 * 16 14 12 20 20 C 1.46505 * 120.00512 * 6.33632 * 11 9 8 21 21 C 1.47202 * 109.46877 * 276.52136 * 20 11 9 22 22 N 6.34339 * 123.70462 * 167.21180 * 2 1 3 23 23 S 1.70923 * 124.70090 * 269.99274 * 5 4 2 24 24 H 1.08997 * 109.47374 * 300.00387 * 1 2 3 25 25 H 1.09000 * 109.47086 * 60.00220 * 1 2 3 26 26 H 1.09001 * 109.46929 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47374 * 239.99613 * 2 1 3 28 28 H 1.09003 * 109.47516 * 60.00057 * 3 2 1 29 29 H 1.09008 * 109.46986 * 179.97438 * 3 2 1 30 30 H 1.09001 * 109.47158 * 299.99256 * 3 2 1 31 31 H 1.08990 * 109.47256 * 55.00180 * 4 2 1 32 32 H 1.09008 * 109.47054 * 295.00136 * 4 2 1 33 33 H 1.08004 * 123.03319 * 179.73059 * 7 6 5 34 34 H 0.97005 * 120.00410 * 180.02562 * 15 14 12 35 35 H 1.09003 * 109.46723 * 36.52148 * 20 11 9 36 36 H 1.08996 * 109.46882 * 156.52289 * 20 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 3.5418 -0.8293 1.1890 6 7 4.3633 0.0512 1.6622 7 6 5.6444 -0.1866 1.5317 8 6 5.9281 -1.3643 0.8969 9 6 7.2650 -1.8925 0.6105 10 8 8.2518 -1.2905 0.9918 11 7 7.4015 -3.0449 -0.0750 12 6 8.6404 -3.6059 -0.2307 13 1 9.5265 -3.0003 -0.1104 14 6 8.7581 -4.9552 -0.5437 15 7 7.7377 -5.7630 -0.3628 16 14 10.3667 -5.6200 -1.2216 17 1 11.4537 -5.3839 -0.2377 18 1 10.2339 -7.0778 -1.4714 19 1 10.6918 -4.9268 -2.4941 20 6 6.2241 -3.6971 -0.6536 21 6 5.5611 -4.5149 0.3752 22 7 5.0500 -5.1462 1.1681 23 16 4.3962 -2.1319 0.4856 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8933 -0.5139 -0.8899 28 1 1.6766 1.9564 0.8900 29 1 3.1300 1.4425 0.0005 30 1 1.6767 1.9563 -0.8901 31 1 1.6054 -1.7197 1.2952 32 1 1.7515 -0.1583 2.1371 33 1 6.4078 0.4885 1.8894 34 1 7.8198 -6.7046 -0.5809 35 1 5.5308 -2.9387 -1.0174 36 1 6.5324 -4.3349 -1.4819 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000931298268.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:03:33 Heat of formation + Delta-G solvation = 22.405816 kcal Electronic energy + Delta-G solvation = -21061.525202 eV Core-core repulsion = 17865.408785 eV Total energy + Delta-G solvation = -3196.116417 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 293.094 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.09137 -40.35882 -37.76857 -37.18516 -36.31858 -33.98807 -31.92408 -29.60925 -29.20055 -27.94129 -26.89161 -25.10287 -22.89889 -21.24189 -20.10204 -19.83102 -19.52922 -18.37331 -17.55664 -17.06390 -16.35502 -16.01480 -15.89740 -15.68130 -15.35729 -15.21898 -14.83345 -14.45740 -14.28400 -13.88366 -13.57085 -13.43834 -13.25401 -13.01026 -12.97599 -12.68697 -12.56157 -12.48666 -12.46733 -12.13132 -12.04232 -11.76599 -11.57441 -11.26625 -10.85989 -10.49882 -10.32479 -10.12825 -9.73790 -8.52452 -6.09935 -0.71222 0.21335 0.63433 1.35951 1.47281 1.56294 1.57182 1.77380 2.11703 2.26104 2.30881 2.86620 2.91851 3.13561 3.30469 3.84138 3.89149 3.98309 4.05112 4.21991 4.31440 4.41915 4.65659 4.69457 4.72539 4.87152 4.91613 5.05155 5.08887 5.21338 5.30625 5.37275 5.49474 5.50575 5.85251 6.22632 6.66359 6.83297 6.92047 7.11159 7.67084 8.51168 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.027519 B = 0.004678 C = 0.004282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1017.216565 B = 5983.593141 C = 6538.160263 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.088 4.088 3 C -0.145 4.145 4 C -0.042 4.042 5 C 0.032 3.968 6 N -0.485 5.485 7 C 0.097 3.903 8 C -0.297 4.297 9 C 0.514 3.486 10 O -0.603 6.603 11 N -0.437 5.437 12 C -0.341 4.341 13 H 0.092 0.908 14 C 0.009 3.991 15 N -0.887 5.887 16 Si 0.998 3.002 17 H -0.280 1.280 18 H -0.274 1.274 19 H -0.258 1.258 20 C 0.212 3.788 21 C 0.250 3.750 22 N -0.473 5.473 23 S 0.193 5.807 24 H 0.062 0.938 25 H 0.066 0.934 26 H 0.065 0.935 27 H 0.072 0.928 28 H 0.058 0.942 29 H 0.036 0.964 30 H 0.063 0.937 31 H 0.101 0.899 32 H 0.100 0.900 33 H 0.183 0.817 34 H 0.282 0.718 35 H 0.118 0.882 36 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.889 6.542 -4.901 16.116 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.108 4.108 3 C -0.202 4.202 4 C -0.083 4.083 5 C -0.242 4.242 6 N -0.199 5.199 7 C -0.061 4.061 8 C -0.421 4.421 9 C 0.304 3.696 10 O -0.490 6.490 11 N -0.154 5.154 12 C -0.468 4.468 13 H 0.110 0.890 14 C -0.194 4.194 15 N -0.524 5.524 16 Si 0.821 3.179 17 H -0.205 1.205 18 H -0.199 1.199 19 H -0.182 1.182 20 C 0.084 3.916 21 C -0.069 4.069 22 N -0.154 5.154 23 S 0.453 5.547 24 H 0.081 0.919 25 H 0.085 0.915 26 H 0.084 0.916 27 H 0.090 0.910 28 H 0.077 0.923 29 H 0.055 0.945 30 H 0.082 0.918 31 H 0.120 0.880 32 H 0.118 0.882 33 H 0.199 0.801 34 H 0.093 0.907 35 H 0.134 0.866 36 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -14.773 5.214 -3.832 16.128 hybrid contribution 2.143 0.300 0.112 2.167 sum -12.630 5.514 -3.720 14.274 Atomic orbital electron populations 1.21795 0.92520 1.02738 1.02786 1.21130 0.97358 0.96174 0.96116 1.21827 1.00348 0.95914 1.02138 1.20641 0.82775 1.03541 1.01346 1.28339 1.02765 0.94389 0.98689 1.66244 1.01723 1.30664 1.21246 1.22392 0.92692 0.94342 0.96664 1.26076 0.97585 1.03057 1.15374 1.17089 0.86781 0.84051 0.81672 1.90636 1.39806 1.61243 1.57356 1.43616 1.07207 1.19440 1.45156 1.19761 0.84344 0.93780 1.48957 0.88971 1.26093 1.02624 0.94767 0.95950 1.69839 1.33123 1.05858 1.43564 0.84912 0.76804 0.77138 0.79084 1.20543 1.19859 1.18184 1.19218 0.85622 0.94302 0.92452 1.28989 0.91056 0.92501 0.94374 1.80845 1.13204 1.11175 1.10130 1.84254 0.95208 1.22089 1.53117 0.91899 0.91503 0.91642 0.90961 0.92274 0.94523 0.91761 0.88022 0.88193 0.80052 0.90720 0.86571 0.83747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.70 9.19 71.98 0.66 -1.04 16 2 C -0.09 -1.49 2.91 -10.79 -0.03 -1.52 16 3 C -0.14 -2.75 8.99 71.98 0.65 -2.11 16 4 C -0.04 -0.85 5.27 29.85 0.16 -0.69 16 5 C 0.03 0.92 5.87 88.47 0.52 1.44 16 6 N -0.48 -15.93 9.73 -189.51 -1.84 -17.77 16 7 C 0.10 3.60 11.17 84.48 0.94 4.55 16 8 C -0.30 -11.95 6.23 24.10 0.15 -11.80 16 9 C 0.51 25.12 7.52 86.41 0.65 25.77 16 10 O -0.60 -33.47 16.54 -4.42 -0.07 -33.55 16 11 N -0.44 -20.95 2.60 -650.05 -1.69 -22.64 16 12 C -0.34 -17.55 9.33 84.09 0.78 -16.76 16 13 H 0.09 5.05 7.36 -2.91 -0.02 5.02 16 14 C 0.01 0.44 4.95 84.94 0.42 0.86 16 15 N -0.89 -42.41 9.35 21.67 0.20 -42.21 16 16 Si 1.00 38.33 29.59 68.60 2.03 40.36 16 17 H -0.28 -11.16 7.11 99.48 0.71 -10.46 16 18 H -0.27 -10.10 7.11 99.48 0.71 -9.39 16 19 H -0.26 -9.40 7.11 99.48 0.71 -8.69 16 20 C 0.21 8.44 4.73 84.57 0.40 8.84 16 21 C 0.25 10.67 10.36 89.45 0.93 11.60 16 22 N -0.47 -21.35 18.53 20.00 0.37 -20.97 16 23 S 0.19 6.16 16.10 -56.49 -0.91 5.25 16 24 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 25 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 26 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 27 H 0.07 1.25 8.14 -2.39 -0.02 1.24 16 28 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 29 H 0.04 0.88 6.79 -2.38 -0.02 0.87 16 30 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 31 H 0.10 1.71 8.14 -2.39 -0.02 1.69 16 32 H 0.10 1.89 8.14 -2.38 -0.02 1.87 16 33 H 0.18 6.54 8.06 -2.91 -0.02 6.52 16 34 H 0.28 12.88 8.31 -92.70 -0.77 12.11 16 35 H 0.12 3.82 5.04 -18.35 -0.09 3.73 16 36 H 0.15 5.66 6.47 -2.39 -0.02 5.65 16 Total: -1.00 -63.45 317.43 5.35 -58.10 By element: Atomic # 1 Polarization: 13.27 SS G_CDS: 1.03 Total: 14.29 kcal Atomic # 6 Polarization: 12.91 SS G_CDS: 6.23 Total: 19.14 kcal Atomic # 7 Polarization: -100.64 SS G_CDS: -2.96 Total: -103.59 kcal Atomic # 8 Polarization: -33.47 SS G_CDS: -0.07 Total: -33.55 kcal Atomic # 14 Polarization: 38.33 SS G_CDS: 2.03 Total: 40.36 kcal Atomic # 16 Polarization: 6.16 SS G_CDS: -0.91 Total: 5.25 kcal Total: -63.45 5.35 -58.10 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931298268.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.507 kcal (2) G-P(sol) polarization free energy of solvation -63.447 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.346 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.102 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds