Wall clock time and date at job start Tue Mar 31 2020 07:00:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.29433 * 124.80317 * 2 1 4 4 C 1.30937 * 117.36045 * 180.02562 * 3 2 1 5 5 C 1.35658 * 114.19838 * 0.02562 * 4 3 2 6 6 C 1.46683 * 126.13335 * 180.02562 * 5 4 3 7 7 O 1.21683 * 120.00399 * 359.97438 * 6 5 4 8 8 N 1.34781 * 119.99899 * 180.02562 * 6 5 4 9 9 C 1.46501 * 120.00069 * 179.97438 * 8 6 5 10 10 H 1.09006 * 115.51258 * 350.58337 * 9 8 6 11 11 C 1.52996 * 117.44537 * 205.16501 * 9 8 6 12 12 H 1.08996 * 119.53573 * 4.11877 * 11 9 8 13 13 C 1.54388 * 118.12602 * 159.21041 * 11 9 8 14 14 N 1.48147 * 104.61664 * 87.19168 * 13 11 9 15 15 C 1.36935 * 127.83956 * 140.42177 * 14 13 11 16 16 H 1.07996 * 120.00044 * 195.57550 * 15 14 13 17 17 C 1.38806 * 120.00128 * 15.56474 * 15 14 13 18 18 N 1.31631 * 119.99740 * 9.10430 * 17 15 14 19 19 Si 1.86799 * 120.00383 * 189.10230 * 17 15 14 20 20 H 1.48501 * 109.46977 * 89.99960 * 19 17 15 21 21 H 1.48497 * 109.47303 * 210.00515 * 19 17 15 22 22 H 1.48504 * 109.46877 * 330.00546 * 19 17 15 23 23 C 1.48153 * 104.32307 * 320.41649 * 14 13 11 24 24 C 1.52995 * 117.44285 * 135.99122 * 9 8 6 25 25 H 1.09002 * 119.54094 * 355.88794 * 24 9 8 26 26 S 1.70956 * 124.80726 * 180.35917 * 2 1 3 27 27 H 1.08993 * 109.46912 * 89.97586 * 1 2 3 28 28 H 1.09003 * 109.46910 * 209.97435 * 1 2 3 29 29 H 1.09000 * 109.47194 * 329.96868 * 1 2 3 30 30 H 1.08009 * 122.90376 * 179.97438 * 4 3 2 31 31 H 0.97002 * 120.00377 * 359.97438 * 8 6 5 32 32 H 1.08997 * 110.41032 * 205.97795 * 13 11 9 33 33 H 1.09007 * 110.40372 * 328.29108 * 13 11 9 34 34 H 0.96998 * 119.99619 * 179.97438 * 18 17 15 35 35 H 1.08998 * 110.40532 * 158.36955 * 23 14 13 36 36 H 1.09001 * 110.40592 * 280.79796 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2457 1.0628 0.0000 4 6 3.5441 0.8932 -0.0005 5 6 3.9352 -0.4058 -0.0015 6 6 5.3189 -0.8925 -0.0018 7 8 6.2426 -0.1003 -0.0015 8 7 5.5673 -2.2172 -0.0034 9 6 6.9493 -2.7033 -0.0042 10 1 7.7142 -1.9434 -0.1644 11 6 7.2067 -4.0959 -0.5832 12 1 6.3838 -4.6510 -1.0335 13 6 8.6391 -4.4382 -1.0464 14 7 9.3145 -4.9451 0.1708 15 6 10.1948 -5.9893 0.2699 16 1 10.4208 -6.4152 1.2362 17 6 10.7965 -6.5006 -0.8717 18 7 10.6641 -5.8745 -2.0221 19 14 11.7941 -8.0769 -0.7757 20 1 10.9057 -9.2408 -1.0236 21 1 12.8679 -8.0465 -1.8010 22 1 12.4017 -8.1967 0.5740 23 6 8.8216 -4.0658 1.2565 24 6 7.2906 -3.8596 0.9378 25 1 6.5303 -4.2389 1.6206 26 16 2.4828 -1.4037 -0.0088 27 1 -0.3633 0.0004 -1.0276 28 1 -0.3633 -0.8902 0.5135 29 1 -0.3633 0.8897 0.5143 30 1 4.2433 1.7164 -0.0010 31 1 4.8311 -2.8488 -0.0040 32 1 8.6155 -5.2089 -1.8168 33 1 9.1418 -3.5453 -1.4184 34 1 11.0849 -6.2316 -2.8197 35 1 8.9358 -4.5556 2.2236 36 1 9.3536 -3.1145 1.2462 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000958359135.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:00:28 Heat of formation + Delta-G solvation = 72.795621 kcal Electronic energy + Delta-G solvation = -20077.152877 eV Core-core repulsion = 16883.221526 eV Total energy + Delta-G solvation = -3193.931351 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 293.094 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.40123 -39.50168 -38.16177 -34.56753 -32.93237 -32.44343 -30.42089 -28.94376 -27.05460 -25.76162 -24.68387 -22.78346 -21.15437 -20.58776 -19.60053 -19.32521 -18.66332 -17.09635 -16.77651 -16.24907 -15.60016 -15.24474 -14.72903 -14.60988 -14.36215 -13.83744 -13.65277 -13.31804 -12.98945 -12.84114 -12.77080 -12.29579 -11.93530 -11.59700 -11.50838 -11.02106 -10.85584 -10.43290 -10.34793 -10.27114 -10.16588 -9.98179 -9.84739 -9.76085 -9.28220 -9.24747 -8.77780 -8.41044 -6.90447 -5.82365 -3.17015 -0.07662 0.80424 1.21869 2.17827 2.92476 3.01008 3.37001 3.42191 3.44352 3.70814 4.27467 4.44170 4.55239 4.62486 4.93665 4.96245 5.02157 5.09365 5.31580 5.35571 5.38590 5.53227 5.69134 5.77532 5.81761 6.04950 6.15721 6.46934 6.65400 6.69305 6.84769 7.23386 7.30866 7.40107 7.50172 7.68775 8.04535 8.17343 9.08036 9.70706 10.47311 11.31998 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.043542 B = 0.002797 C = 0.002739 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 642.897224 B =10006.811504 C =10219.651450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.057 3.943 3 N -0.480 5.480 4 C 0.120 3.880 5 C -0.288 4.288 6 C 0.597 3.403 7 O -0.521 6.521 8 N -0.691 5.691 9 C 0.091 3.909 10 H 0.136 0.864 11 C -0.178 4.178 12 H 0.102 0.898 13 C 0.185 3.815 14 N -0.592 5.592 15 C -0.228 4.228 16 H 0.078 0.922 17 C -0.005 4.005 18 N -0.915 5.915 19 Si 0.914 3.086 20 H -0.288 1.288 21 H -0.290 1.290 22 H -0.280 1.280 23 C 0.158 3.842 24 C -0.184 4.184 25 H 0.107 0.893 26 S 0.163 5.837 27 H 0.091 0.909 28 H 0.084 0.916 29 H 0.093 0.907 30 H 0.190 0.810 31 H 0.396 0.604 32 H 0.092 0.908 33 H 0.027 0.973 34 H 0.255 0.745 35 H 0.051 0.949 36 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.347 8.858 3.685 23.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.218 4.218 3 N -0.194 5.194 4 C -0.037 4.037 5 C -0.412 4.412 6 C 0.382 3.618 7 O -0.399 6.399 8 N -0.339 5.339 9 C -0.014 4.014 10 H 0.153 0.847 11 C -0.199 4.199 12 H 0.120 0.880 13 C 0.059 3.941 14 N -0.315 5.315 15 C -0.356 4.356 16 H 0.095 0.905 17 C -0.203 4.203 18 N -0.561 5.561 19 Si 0.744 3.256 20 H -0.215 1.215 21 H -0.216 1.216 22 H -0.205 1.205 23 C 0.031 3.969 24 C -0.205 4.205 25 H 0.125 0.875 26 S 0.419 5.581 27 H 0.110 0.890 28 H 0.103 0.897 29 H 0.112 0.888 30 H 0.207 0.793 31 H 0.230 0.770 32 H 0.110 0.890 33 H 0.045 0.955 34 H 0.065 0.935 35 H 0.070 0.930 36 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -20.982 8.659 3.533 22.971 hybrid contribution 0.579 -0.453 -0.031 0.735 sum -20.403 8.206 3.502 22.269 Atomic orbital electron populations 1.20541 0.84634 1.04675 1.04351 1.27509 1.02265 0.91046 1.00941 1.66243 1.04821 1.31142 1.17221 1.22210 0.90692 0.95596 0.95196 1.25810 0.97896 0.97847 1.19628 1.16644 0.85862 0.82568 0.76711 1.90856 1.44135 1.55051 1.49842 1.45297 1.08596 1.05921 1.74040 1.21968 0.82748 0.92181 1.04488 0.84684 1.24642 1.02461 0.95818 0.97006 0.88027 1.21079 0.83880 0.98217 0.90931 1.45120 1.49835 1.33947 1.02646 1.18997 1.16704 1.05908 0.93970 0.90453 1.24913 0.99498 0.99757 0.96094 1.69899 1.47894 1.39041 0.99255 0.86090 0.79368 0.82863 0.77253 1.21501 1.21625 1.20507 1.21716 0.88093 0.94149 0.92991 1.25111 1.00060 1.01434 0.93915 0.87474 1.83925 0.96685 1.11535 1.65986 0.89042 0.89689 0.88828 0.79317 0.77006 0.88988 0.95471 0.93488 0.93017 0.95025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.38 10.46 36.01 0.38 0.00 16 2 C 0.06 0.49 7.39 -13.29 -0.10 0.39 16 3 N -0.48 -5.27 10.51 -11.50 -0.12 -5.39 16 4 C 0.12 1.40 11.09 -18.86 -0.21 1.19 16 5 C -0.29 -3.44 6.48 -37.10 -0.24 -3.68 16 6 C 0.60 8.87 7.79 -12.85 -0.10 8.77 16 7 O -0.52 -9.55 16.43 5.20 0.09 -9.46 16 8 N -0.69 -9.66 5.56 -55.11 -0.31 -9.96 16 9 C 0.09 1.55 5.93 -67.93 -0.40 1.14 16 10 H 0.14 2.57 7.40 -51.93 -0.38 2.18 16 11 C -0.18 -3.31 6.97 -89.29 -0.62 -3.94 16 12 H 0.10 1.72 8.14 -51.93 -0.42 1.30 16 13 C 0.19 4.41 5.70 -2.41 -0.01 4.40 16 14 N -0.59 -15.06 3.38 -166.70 -0.56 -15.63 16 15 C -0.23 -6.29 10.35 -15.06 -0.16 -6.44 16 16 H 0.08 2.06 7.84 -52.49 -0.41 1.65 16 17 C -0.01 -0.15 5.40 -17.43 -0.09 -0.24 16 18 N -0.91 -26.62 10.86 55.49 0.60 -26.01 16 19 Si 0.91 21.76 29.56 -169.99 -5.03 16.73 16 20 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 21 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 22 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 23 C 0.16 3.30 7.10 -0.54 0.00 3.30 16 24 C -0.18 -3.23 7.34 -87.43 -0.64 -3.87 16 25 H 0.11 1.67 8.14 -51.93 -0.42 1.25 16 26 S 0.16 1.38 22.31 -107.50 -2.40 -1.02 16 27 H 0.09 0.32 8.14 -51.93 -0.42 -0.11 16 28 H 0.08 0.23 8.14 -51.93 -0.42 -0.19 16 29 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.19 2.05 8.06 -52.48 -0.42 1.63 16 31 H 0.40 4.51 8.01 -40.82 -0.33 4.19 16 32 H 0.09 2.43 6.51 -51.93 -0.34 2.09 16 33 H 0.03 0.69 8.14 -51.92 -0.42 0.27 16 34 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 35 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 36 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 LS Contribution 323.20 15.07 4.87 4.87 Total: -1.00 -32.52 323.20 -9.46 -41.98 By element: Atomic # 1 Polarization: 7.27 SS G_CDS: -4.40 Total: 2.87 kcal Atomic # 6 Polarization: 3.22 SS G_CDS: -2.21 Total: 1.01 kcal Atomic # 7 Polarization: -56.60 SS G_CDS: -0.39 Total: -56.99 kcal Atomic # 8 Polarization: -9.55 SS G_CDS: 0.09 Total: -9.46 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.03 Total: 16.73 kcal Atomic # 16 Polarization: 1.38 SS G_CDS: -2.40 Total: -1.02 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -32.52 -9.46 -41.98 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958359135.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.779 kcal (2) G-P(sol) polarization free energy of solvation -32.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.461 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.983 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds