Wall clock time and date at job start Tue Mar 31 2020 06:56:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.29525 * 121.52702 * 2 1 4 4 S 1.69484 * 107.83918 * 180.21472 * 3 2 1 5 5 C 1.72012 * 96.02715 * 359.74457 * 4 3 2 6 6 C 1.37900 * 105.36780 * 0.02562 * 5 4 3 7 7 C 1.47340 * 123.08953 * 179.97438 * 6 5 4 8 8 O 1.21607 * 120.00643 * 180.02562 * 7 6 5 9 9 N 1.34781 * 119.99825 * 0.02562 * 7 6 5 10 10 C 1.46495 * 120.00100 * 179.97438 * 9 7 6 11 11 H 1.09003 * 115.51821 * 350.41910 * 10 9 7 12 12 C 1.52997 * 117.44582 * 205.00332 * 10 9 7 13 13 H 1.08998 * 119.53829 * 5.75645 * 12 10 9 14 14 C 1.54392 * 118.12572 * 160.85373 * 12 10 9 15 15 N 1.48152 * 104.61485 * 87.18854 * 14 12 10 16 16 C 1.36931 * 127.83363 * 140.41470 * 15 14 12 17 17 H 1.08000 * 120.00270 * 195.57151 * 16 15 14 18 18 C 1.38819 * 120.00398 * 15.57438 * 16 15 14 19 19 N 1.31620 * 119.99411 * 9.09852 * 18 16 15 20 20 Si 1.86795 * 120.00280 * 189.09162 * 18 16 15 21 21 H 1.48500 * 109.46732 * 90.00153 * 20 18 16 22 22 H 1.48497 * 109.47295 * 209.99808 * 20 18 16 23 23 H 1.48497 * 109.47280 * 330.00500 * 20 18 16 24 24 C 1.48141 * 104.32668 * 320.41713 * 15 14 12 25 25 C 1.53000 * 117.40510 * 135.77312 * 10 9 7 26 26 H 1.09002 * 120.26471 * 356.19146 * 25 10 9 27 27 H 1.09000 * 109.47089 * 270.25121 * 1 2 3 28 28 H 1.08999 * 109.47251 * 30.25244 * 1 2 3 29 29 H 1.09001 * 109.47073 * 150.24939 * 1 2 3 30 30 H 1.08004 * 127.31848 * 180.02562 * 5 4 3 31 31 H 0.97002 * 119.99759 * 0.02562 * 9 7 6 32 32 H 1.09000 * 110.40349 * 328.40714 * 14 12 10 33 33 H 1.09002 * 110.40794 * 205.97283 * 14 12 10 34 34 H 0.97005 * 119.99784 * 180.02562 * 19 18 16 35 35 H 1.08999 * 110.40844 * 158.37208 * 24 15 14 36 36 H 1.09003 * 110.40500 * 280.80635 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1843 1.1041 0.0000 4 16 3.8310 0.7030 -0.0060 5 6 3.6017 -1.0018 -0.0010 6 6 2.2352 -1.1867 0.0046 7 6 1.6036 -2.5179 0.0097 8 8 0.3915 -2.6159 0.0141 9 7 2.3694 -3.6270 0.0095 10 6 1.7415 -4.9506 0.0151 11 1 0.6645 -4.9587 0.1830 12 6 2.5532 -6.1137 0.5887 13 1 3.5180 -5.9168 1.0561 14 6 1.7947 -7.3868 1.0219 15 7 1.7059 -8.2061 -0.2093 16 6 1.8440 -9.5634 -0.3267 17 1 2.0063 -10.0078 -1.2975 18 6 1.7752 -10.3684 0.8022 19 7 1.4013 -9.8547 1.9549 20 14 2.2132 -12.1805 0.6854 21 1 3.6633 -12.3574 0.9519 22 1 1.4288 -12.9450 1.6880 23 1 1.8958 -12.6796 -0.6767 24 6 1.4340 -7.2240 -1.2844 25 6 2.3154 -6.0063 -0.9319 26 1 3.1181 -5.7469 -1.6222 27 1 -0.3633 0.0045 1.0277 28 1 -0.3634 0.8877 -0.5177 29 1 -0.3633 -0.8922 -0.5100 30 1 4.3657 -1.7652 -0.0021 31 1 3.3362 -3.5489 0.0063 32 1 0.7978 -7.1315 1.3812 33 1 2.3530 -7.9182 1.7926 34 1 1.3536 -10.4170 2.7439 35 1 1.7201 -7.6325 -2.2536 36 1 0.3808 -6.9432 -1.2852 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000958617526.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:56:23 Heat of formation + Delta-G solvation = 69.943754 kcal Electronic energy + Delta-G solvation = -20408.582583 eV Core-core repulsion = 17214.527566 eV Total energy + Delta-G solvation = -3194.055017 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 293.094 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.54116 -39.01793 -37.81371 -34.67630 -33.05061 -31.67660 -30.11931 -29.72430 -27.20184 -25.87043 -24.70861 -22.46514 -20.96340 -20.52515 -19.60609 -19.34391 -18.46333 -17.15847 -16.89025 -16.10196 -15.52738 -14.92012 -14.75704 -14.28742 -14.18659 -13.66584 -13.57521 -13.29145 -12.80165 -12.59564 -12.56224 -12.21965 -11.65709 -11.59762 -11.54349 -11.03008 -11.00264 -10.86326 -10.44754 -10.27196 -10.18229 -10.08836 -9.84079 -9.76504 -9.25687 -9.04109 -8.77078 -8.41123 -6.90759 -5.83102 -3.17568 0.08569 1.01646 1.42262 1.59039 2.96794 3.06529 3.36316 3.41642 3.43715 4.12821 4.25014 4.43787 4.60393 4.66090 4.95721 5.08341 5.16953 5.29747 5.33049 5.45028 5.51680 5.56100 5.78216 5.85559 5.97160 6.09221 6.15748 6.41373 6.47264 6.65395 6.71225 6.85087 7.30043 7.42534 7.49220 7.67897 8.11127 8.16769 9.07452 9.70122 10.46697 11.31239 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.041126 B = 0.002863 C = 0.002791 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 680.665099 B = 9777.172170 C =10028.463493 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C 0.167 3.833 3 N -0.470 5.470 4 S 0.286 5.714 5 C -0.175 4.175 6 C -0.206 4.206 7 C 0.586 3.414 8 O -0.525 6.525 9 N -0.689 5.689 10 C 0.097 3.903 11 H 0.135 0.865 12 C -0.179 4.179 13 H 0.103 0.897 14 C 0.185 3.815 15 N -0.593 5.593 16 C -0.228 4.228 17 H 0.077 0.923 18 C -0.005 4.005 19 N -0.915 5.915 20 Si 0.914 3.086 21 H -0.288 1.288 22 H -0.290 1.290 23 H -0.280 1.280 24 C 0.155 3.845 25 C -0.182 4.182 26 H 0.103 0.897 27 H 0.085 0.915 28 H 0.073 0.927 29 H 0.113 0.887 30 H 0.191 0.809 31 H 0.397 0.603 32 H 0.027 0.973 33 H 0.092 0.908 34 H 0.255 0.745 35 H 0.052 0.948 36 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.687 19.569 -3.533 20.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.010 4.010 3 N -0.291 5.291 4 S 0.442 5.558 5 C -0.324 4.324 6 C -0.228 4.228 7 C 0.371 3.629 8 O -0.402 6.402 9 N -0.336 5.336 10 C -0.008 4.008 11 H 0.153 0.847 12 C -0.201 4.201 13 H 0.121 0.879 14 C 0.059 3.941 15 N -0.316 5.316 16 C -0.356 4.356 17 H 0.095 0.905 18 C -0.202 4.202 19 N -0.561 5.561 20 Si 0.744 3.256 21 H -0.215 1.215 22 H -0.216 1.216 23 H -0.205 1.205 24 C 0.028 3.972 25 C -0.203 4.203 26 H 0.121 0.879 27 H 0.104 0.896 28 H 0.092 0.908 29 H 0.131 0.869 30 H 0.208 0.792 31 H 0.231 0.769 32 H 0.045 0.955 33 H 0.110 0.890 34 H 0.065 0.935 35 H 0.070 0.930 36 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges 5.687 21.315 -3.401 22.322 hybrid contribution 0.301 -2.511 0.036 2.530 sum 5.989 18.804 -3.365 20.019 Atomic orbital electron populations 1.20959 0.85187 1.05267 1.04446 1.21491 0.99714 0.86585 0.93213 1.76514 1.00147 1.26147 1.26318 1.84063 1.10969 0.95541 1.65226 1.27446 0.99368 1.04848 1.00756 1.20456 0.92147 0.96225 1.13969 1.17220 0.86568 0.82663 0.76474 1.90735 1.13250 1.86367 1.49877 1.45215 1.09495 1.05026 1.73912 1.21896 0.97872 0.77236 1.03827 0.84738 1.24669 1.01332 0.97127 0.96927 0.87894 1.21075 0.96553 0.85665 0.90842 1.45176 1.82261 1.02026 1.02153 1.19003 1.42631 0.79795 0.94215 0.90481 1.24908 1.00910 0.98224 0.96189 1.69895 1.51440 1.35025 0.99715 0.86096 0.77912 0.84337 0.77273 1.21513 1.21620 1.20515 1.21135 0.95177 0.87710 0.93157 1.24377 1.03467 0.98651 0.93851 0.87902 0.89634 0.90821 0.86883 0.79169 0.76910 0.95529 0.89023 0.93497 0.92958 0.95378 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.04 9.51 36.01 0.34 -0.70 16 2 C 0.17 1.94 6.75 -83.19 -0.56 1.38 16 3 N -0.47 -5.40 11.97 32.50 0.39 -5.01 16 4 S 0.29 2.39 23.69 -107.50 -2.55 -0.16 16 5 C -0.17 -1.41 10.79 30.61 0.33 -1.07 16 6 C -0.21 -2.29 5.86 -105.95 -0.62 -2.91 16 7 C 0.59 7.86 7.78 -12.56 -0.10 7.76 16 8 O -0.52 -8.56 13.32 5.27 0.07 -8.49 16 9 N -0.69 -8.61 5.53 -54.91 -0.30 -8.91 16 10 C 0.10 1.55 5.98 -67.93 -0.41 1.14 16 11 H 0.14 2.42 7.40 -51.93 -0.38 2.04 16 12 C -0.18 -3.21 7.06 -89.22 -0.63 -3.84 16 13 H 0.10 1.66 8.14 -51.93 -0.42 1.24 16 14 C 0.18 4.32 5.70 -2.40 -0.01 4.30 16 15 N -0.59 -14.88 3.38 -168.85 -0.57 -15.45 16 16 C -0.23 -6.25 10.35 -15.06 -0.16 -6.41 16 17 H 0.08 2.04 7.84 -52.49 -0.41 1.63 16 18 C -0.01 -0.14 5.40 -17.43 -0.09 -0.23 16 19 N -0.91 -26.38 10.86 55.49 0.60 -25.78 16 20 Si 0.91 21.60 29.56 -169.99 -5.03 16.57 16 21 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 22 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 23 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 24 C 0.15 3.18 7.04 -2.41 -0.02 3.17 16 25 C -0.18 -3.09 7.06 -89.21 -0.63 -3.72 16 26 H 0.10 1.55 8.14 -51.93 -0.42 1.12 16 27 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 28 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.11 1.36 5.63 -51.93 -0.29 1.07 16 30 H 0.19 0.90 7.20 -52.48 -0.38 0.52 16 31 H 0.40 3.73 7.40 -40.82 -0.30 3.43 16 32 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.09 2.39 6.51 -51.93 -0.34 2.05 16 34 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 35 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 36 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 LS Contribution 316.20 15.07 4.77 4.77 Total: -1.00 -31.55 316.20 -9.37 -40.92 By element: Atomic # 1 Polarization: 6.85 SS G_CDS: -4.20 Total: 2.65 kcal Atomic # 6 Polarization: 1.43 SS G_CDS: -2.55 Total: -1.12 kcal Atomic # 7 Polarization: -55.26 SS G_CDS: 0.12 Total: -55.15 kcal Atomic # 8 Polarization: -8.56 SS G_CDS: 0.07 Total: -8.49 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.03 Total: 16.57 kcal Atomic # 16 Polarization: 2.39 SS G_CDS: -2.55 Total: -0.16 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -31.55 -9.37 -40.92 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958617526.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.867 kcal (2) G-P(sol) polarization free energy of solvation -31.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.923 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds