Wall clock time and date at job start Tue Mar 31 2020 06:56:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.29525 * 121.52702 * 2 1 4 4 S 1.69484 * 107.83918 * 180.21472 * 3 2 1 5 5 C 1.72012 * 96.02715 * 359.74457 * 4 3 2 6 6 C 1.37900 * 105.36780 * 0.02562 * 5 4 3 7 7 C 1.47340 * 123.08953 * 179.97438 * 6 5 4 8 8 O 1.21607 * 120.00643 * 180.02562 * 7 6 5 9 9 N 1.34781 * 119.99825 * 0.02562 * 7 6 5 10 10 C 1.46495 * 120.00100 * 179.97438 * 9 7 6 11 11 H 1.09003 * 115.51821 * 350.41910 * 10 9 7 12 12 C 1.52997 * 117.44582 * 205.00332 * 10 9 7 13 13 H 1.08998 * 119.53829 * 5.75645 * 12 10 9 14 14 C 1.54392 * 118.12572 * 160.85373 * 12 10 9 15 15 N 1.48152 * 104.61485 * 87.18854 * 14 12 10 16 16 C 1.36931 * 127.83363 * 140.41470 * 15 14 12 17 17 H 1.08000 * 120.00270 * 195.57151 * 16 15 14 18 18 C 1.38819 * 120.00398 * 15.57438 * 16 15 14 19 19 N 1.31620 * 119.99411 * 9.09852 * 18 16 15 20 20 Si 1.86795 * 120.00280 * 189.09162 * 18 16 15 21 21 H 1.48500 * 109.46732 * 90.00153 * 20 18 16 22 22 H 1.48497 * 109.47295 * 209.99808 * 20 18 16 23 23 H 1.48497 * 109.47280 * 330.00500 * 20 18 16 24 24 C 1.48141 * 104.32668 * 320.41713 * 15 14 12 25 25 C 1.53000 * 117.40510 * 135.77312 * 10 9 7 26 26 H 1.09002 * 120.26471 * 356.19146 * 25 10 9 27 27 H 1.09000 * 109.47089 * 270.25121 * 1 2 3 28 28 H 1.08999 * 109.47251 * 30.25244 * 1 2 3 29 29 H 1.09001 * 109.47073 * 150.24939 * 1 2 3 30 30 H 1.08004 * 127.31848 * 180.02562 * 5 4 3 31 31 H 0.97002 * 119.99759 * 0.02562 * 9 7 6 32 32 H 1.09000 * 110.40349 * 328.40714 * 14 12 10 33 33 H 1.09002 * 110.40794 * 205.97283 * 14 12 10 34 34 H 0.97005 * 119.99784 * 180.02562 * 19 18 16 35 35 H 1.08999 * 110.40844 * 158.37208 * 24 15 14 36 36 H 1.09003 * 110.40500 * 280.80635 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1843 1.1041 0.0000 4 16 3.8310 0.7030 -0.0060 5 6 3.6017 -1.0018 -0.0010 6 6 2.2352 -1.1867 0.0046 7 6 1.6036 -2.5179 0.0097 8 8 0.3915 -2.6159 0.0141 9 7 2.3694 -3.6270 0.0095 10 6 1.7415 -4.9506 0.0151 11 1 0.6645 -4.9587 0.1830 12 6 2.5532 -6.1137 0.5887 13 1 3.5180 -5.9168 1.0561 14 6 1.7947 -7.3868 1.0219 15 7 1.7059 -8.2061 -0.2093 16 6 1.8440 -9.5634 -0.3267 17 1 2.0063 -10.0078 -1.2975 18 6 1.7752 -10.3684 0.8022 19 7 1.4013 -9.8547 1.9549 20 14 2.2132 -12.1805 0.6854 21 1 3.6633 -12.3574 0.9519 22 1 1.4288 -12.9450 1.6880 23 1 1.8958 -12.6796 -0.6767 24 6 1.4340 -7.2240 -1.2844 25 6 2.3154 -6.0063 -0.9319 26 1 3.1181 -5.7469 -1.6222 27 1 -0.3633 0.0045 1.0277 28 1 -0.3634 0.8877 -0.5177 29 1 -0.3633 -0.8922 -0.5100 30 1 4.3657 -1.7652 -0.0021 31 1 3.3362 -3.5489 0.0063 32 1 0.7978 -7.1315 1.3812 33 1 2.3530 -7.9182 1.7926 34 1 1.3536 -10.4170 2.7439 35 1 1.7201 -7.6325 -2.2536 36 1 0.3808 -6.9432 -1.2852 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000958617526.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:56:23 Heat of formation + Delta-G solvation = 48.785098 kcal Electronic energy + Delta-G solvation = -20409.500092 eV Core-core repulsion = 17214.527566 eV Total energy + Delta-G solvation = -3194.972525 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 293.094 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.55113 -40.33105 -38.91132 -36.14308 -34.57423 -32.88403 -31.66276 -30.54526 -28.91319 -27.66866 -25.69045 -23.81471 -22.28956 -21.93409 -20.88389 -20.49289 -19.35949 -18.82705 -18.06824 -17.37296 -16.70150 -16.44845 -15.88099 -15.56207 -15.20467 -15.04596 -14.89823 -14.62402 -14.34839 -13.80157 -13.39050 -13.34442 -13.26875 -13.21398 -12.85641 -12.70212 -12.36348 -12.12658 -12.01485 -11.87206 -11.78137 -11.65683 -10.95178 -10.84590 -10.80477 -10.67245 -9.87181 -9.60108 -8.91454 -7.91215 -5.27897 -0.62689 0.33420 0.68326 0.70920 1.48180 1.49575 1.58787 1.87927 2.07223 2.49328 2.88062 3.29265 3.45818 3.58954 3.75855 3.83813 3.87811 3.93475 4.15239 4.30479 4.41075 4.41109 4.53782 4.65372 4.70390 4.81623 4.90547 5.01266 5.19335 5.30002 5.43241 5.45920 5.54736 5.60131 5.66032 6.17636 6.44954 7.01229 7.12575 7.68124 8.46270 9.22588 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.041126 B = 0.002863 C = 0.002791 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 680.665099 B = 9777.172170 C =10028.463493 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C 0.156 3.844 3 N -0.505 5.505 4 S 0.338 5.662 5 C -0.148 4.148 6 C -0.234 4.234 7 C 0.588 3.412 8 O -0.561 6.561 9 N -0.674 5.674 10 C 0.121 3.879 11 H 0.110 0.890 12 C -0.178 4.178 13 H 0.130 0.870 14 C 0.187 3.813 15 N -0.617 5.617 16 C -0.241 4.241 17 H 0.083 0.917 18 C -0.062 4.062 19 N -0.948 5.948 20 Si 0.981 3.019 21 H -0.283 1.283 22 H -0.296 1.296 23 H -0.268 1.268 24 C 0.147 3.853 25 C -0.164 4.164 26 H 0.138 0.862 27 H 0.085 0.915 28 H 0.083 0.917 29 H 0.096 0.904 30 H 0.230 0.770 31 H 0.417 0.583 32 H -0.004 1.004 33 H 0.059 0.941 34 H 0.250 0.750 35 H 0.063 0.937 36 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.338 20.742 -4.662 22.836 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.020 4.020 3 N -0.327 5.327 4 S 0.493 5.507 5 C -0.298 4.298 6 C -0.255 4.255 7 C 0.374 3.626 8 O -0.441 6.441 9 N -0.324 5.324 10 C 0.014 3.986 11 H 0.127 0.873 12 C -0.199 4.199 13 H 0.148 0.852 14 C 0.061 3.939 15 N -0.341 5.341 16 C -0.370 4.370 17 H 0.101 0.899 18 C -0.256 4.256 19 N -0.595 5.595 20 Si 0.809 3.191 21 H -0.210 1.210 22 H -0.223 1.223 23 H -0.192 1.192 24 C 0.021 3.979 25 C -0.185 4.185 26 H 0.155 0.845 27 H 0.103 0.897 28 H 0.101 0.899 29 H 0.115 0.885 30 H 0.247 0.753 31 H 0.254 0.746 32 H 0.014 0.986 33 H 0.077 0.923 34 H 0.059 0.941 35 H 0.081 0.919 36 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges 8.363 22.526 -4.561 24.457 hybrid contribution -0.505 -2.764 0.365 2.834 sum 7.859 19.761 -4.195 21.677 Atomic orbital electron populations 1.20877 0.85617 1.04844 1.04318 1.21539 0.99949 0.86982 0.93521 1.76362 1.02332 1.26682 1.27326 1.83942 1.08383 0.94954 1.63394 1.27941 0.98780 1.05957 0.97101 1.20181 0.93320 0.94554 1.17436 1.17536 0.86157 0.83479 0.75392 1.90734 1.15027 1.86947 1.51424 1.44928 1.10436 1.03250 1.73758 1.21387 0.96623 0.78483 1.02149 0.87254 1.24342 1.01955 0.95882 0.97693 0.85227 1.20810 0.95201 0.87854 0.89990 1.45483 1.82624 1.02225 1.03798 1.19402 1.41784 0.81314 0.94493 0.89947 1.25753 1.01426 1.02471 0.95936 1.70097 1.52960 1.36244 1.00219 0.85042 0.77448 0.79188 0.77417 1.20976 1.22260 1.19236 1.21278 0.95533 0.88473 0.92597 1.24278 1.03233 0.97446 0.93559 0.84460 0.89682 0.89867 0.88546 0.75330 0.74553 0.98639 0.92269 0.94105 0.91854 0.96342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.06 9.51 71.24 0.68 -1.38 16 2 C 0.16 3.45 6.75 43.14 0.29 3.74 16 3 N -0.51 -10.71 11.97 -51.09 -0.61 -11.32 16 4 S 0.34 4.49 23.69 -56.49 -1.34 3.15 16 5 C -0.15 -1.77 10.79 67.74 0.73 -1.04 16 6 C -0.23 -4.66 5.86 -20.72 -0.12 -4.78 16 7 C 0.59 14.86 7.78 86.64 0.67 15.53 16 8 O -0.56 -18.40 13.32 -4.05 -0.05 -18.46 16 9 N -0.67 -14.96 5.53 -445.89 -2.47 -17.43 16 10 C 0.12 3.66 5.98 44.99 0.27 3.93 16 11 H 0.11 4.00 7.40 -2.39 -0.02 3.98 16 12 C -0.18 -6.12 7.06 -9.89 -0.07 -6.19 16 13 H 0.13 3.80 8.14 -2.39 -0.02 3.78 16 14 C 0.19 9.03 5.70 86.53 0.49 9.53 16 15 N -0.62 -31.42 3.38 -688.13 -2.33 -33.75 16 16 C -0.24 -13.35 10.35 84.04 0.87 -12.48 16 17 H 0.08 4.34 7.84 -2.91 -0.02 4.32 16 18 C -0.06 -3.49 5.40 84.86 0.46 -3.03 16 19 N -0.95 -56.52 10.86 21.65 0.24 -56.28 16 20 Si 0.98 44.86 29.56 68.60 2.03 46.89 16 21 H -0.28 -12.61 7.11 99.48 0.71 -11.91 16 22 H -0.30 -13.70 7.11 99.48 0.71 -12.99 16 23 H -0.27 -11.57 7.11 99.48 0.71 -10.87 16 24 C 0.15 5.97 7.04 86.54 0.61 6.57 16 25 C -0.16 -5.19 7.06 -9.88 -0.07 -5.26 16 26 H 0.14 3.48 8.14 -2.39 -0.02 3.47 16 27 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 28 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 29 H 0.10 2.42 5.63 -2.39 -0.01 2.40 16 30 H 0.23 0.76 7.20 -2.91 -0.02 0.74 16 31 H 0.42 5.92 7.40 -92.71 -0.69 5.23 16 32 H 0.00 -0.23 8.14 -2.39 -0.02 -0.25 16 33 H 0.06 3.21 6.51 -2.39 -0.02 3.20 16 34 H 0.25 14.44 8.31 -92.70 -0.77 13.67 16 35 H 0.06 2.40 8.14 -2.39 -0.02 2.38 16 36 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 Total: -1.00 -71.54 316.20 0.72 -70.82 By element: Atomic # 1 Polarization: 10.78 SS G_CDS: 0.44 Total: 11.22 kcal Atomic # 6 Polarization: 0.34 SS G_CDS: 4.81 Total: 5.15 kcal Atomic # 7 Polarization: -113.61 SS G_CDS: -5.17 Total: -118.77 kcal Atomic # 8 Polarization: -18.40 SS G_CDS: -0.05 Total: -18.46 kcal Atomic # 14 Polarization: 44.86 SS G_CDS: 2.03 Total: 46.89 kcal Atomic # 16 Polarization: 4.49 SS G_CDS: -1.34 Total: 3.15 kcal Total: -71.54 0.72 -70.82 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958617526.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.610 kcal (2) G-P(sol) polarization free energy of solvation -71.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.825 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds