Wall clock time and date at job start Tue Mar 31 2020 06:55:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35013 * 127.27194 * 2 1 4 4 C 1.39483 * 111.68307 * 180.17351 * 3 2 1 5 5 C 1.47691 * 122.10436 * 179.78414 * 4 3 2 6 6 O 1.21579 * 119.99410 * 359.73230 * 5 4 3 7 7 N 1.34773 * 120.00357 * 179.73725 * 5 4 3 8 8 C 1.46497 * 120.00197 * 180.02562 * 7 5 4 9 9 H 1.09003 * 115.51384 * 350.41219 * 8 7 5 10 10 C 1.53001 * 117.44106 * 205.00079 * 8 7 5 11 11 H 1.09002 * 119.53987 * 4.15796 * 10 8 7 12 12 C 1.54391 * 118.12276 * 159.25371 * 10 8 7 13 13 N 1.51826 * 102.86597 * 88.01620 * 12 10 8 14 14 C 1.36943 * 127.61033 * 140.54207 * 13 12 10 15 15 H 1.07994 * 119.99697 * 179.66525 * 14 13 12 16 16 C 1.38808 * 119.99940 * 359.67089 * 14 13 12 17 17 N 1.31624 * 120.00089 * 359.97438 * 16 14 13 18 18 Si 1.86798 * 120.00176 * 179.97438 * 16 14 13 19 19 H 1.48505 * 109.47106 * 359.97438 * 18 16 14 20 20 H 1.48494 * 109.47548 * 119.99631 * 18 16 14 21 21 H 1.48507 * 109.47147 * 239.99977 * 18 16 14 22 22 C 1.48144 * 104.55308 * 320.27435 * 13 12 10 23 23 C 1.52992 * 117.40891 * 135.77194 * 8 7 5 24 24 H 1.09007 * 119.54057 * 355.89599 * 23 8 7 25 25 N 1.30608 * 115.79352 * 359.51019 * 4 3 2 26 26 S 1.56147 * 109.79735 * 0.27648 * 25 4 3 27 27 H 1.09002 * 109.46448 * 180.29692 * 1 2 3 28 28 H 1.08995 * 109.46620 * 300.28839 * 1 2 3 29 29 H 1.09000 * 109.47410 * 60.29427 * 1 2 3 30 30 H 1.08001 * 124.15336 * 359.96879 * 3 2 1 31 31 H 0.97005 * 119.99799 * 359.97438 * 7 5 4 32 32 H 1.08992 * 110.40800 * 207.99366 * 12 10 8 33 33 H 1.08999 * 110.40393 * 330.42441 * 12 10 8 34 34 H 0.96995 * 119.99945 * 180.02562 * 17 16 14 35 35 H 1.09002 * 110.40706 * 281.07236 * 22 13 12 36 36 H 1.09001 * 110.41178 * 158.64223 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3247 1.0744 0.0000 4 6 3.6682 0.6996 -0.0039 5 6 4.7604 1.6937 -0.0094 6 8 4.5011 2.8815 -0.0156 7 7 6.0444 1.2842 -0.0078 8 6 7.1278 2.2703 -0.0127 9 1 6.8221 3.3028 -0.1814 10 6 8.4775 1.8321 -0.5847 11 1 8.5771 0.8413 -1.0281 12 6 9.4599 2.9275 -1.0522 13 7 10.2317 3.2524 0.2143 14 6 11.5703 3.5156 0.3329 15 1 11.9929 3.7389 1.3014 16 6 12.3839 3.4956 -0.7915 17 7 11.8689 3.2231 -1.9718 18 14 14.2098 3.8554 -0.6298 19 1 14.5360 4.1303 0.7926 20 1 14.9891 2.6816 -1.0988 21 1 14.5557 5.0409 -1.4546 22 6 9.2118 3.2270 1.2884 23 6 8.3039 2.0291 0.9356 24 1 8.2743 1.1851 1.6248 25 7 3.8996 -0.5858 0.0032 26 16 2.5474 -1.3666 0.0075 27 1 -0.3632 -1.0277 0.0053 28 1 -0.3632 0.5183 0.8874 29 1 -0.3634 0.5092 -0.8926 30 1 1.9806 2.0981 -0.0005 31 1 6.2512 0.3364 -0.0025 32 1 10.1059 2.5463 -1.8431 33 1 8.9140 3.8058 -1.3965 34 1 12.4375 3.2088 -2.7574 35 1 8.6365 4.1529 1.2883 36 1 9.6849 3.0727 2.2582 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000958684114.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:55:45 Heat of formation + Delta-G solvation = 50.349459 kcal Electronic energy + Delta-G solvation = -20154.677652 eV Core-core repulsion = 16959.772962 eV Total energy + Delta-G solvation = -3194.904690 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 293.094 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.64891 -40.35986 -39.11521 -36.08865 -34.63296 -33.94570 -32.04100 -29.22444 -28.86378 -27.94194 -26.55317 -23.55120 -22.04386 -21.98705 -21.09357 -20.84094 -19.32746 -18.93375 -18.39487 -17.50289 -16.73469 -16.64395 -16.03562 -15.50830 -15.29360 -14.96522 -14.78819 -14.59876 -14.01108 -13.84138 -13.80947 -13.48845 -13.27747 -13.11992 -13.02687 -12.76124 -12.35002 -12.11184 -11.98764 -11.88308 -11.77028 -11.69003 -11.23135 -10.98089 -10.71910 -10.48233 -9.96593 -9.67415 -8.98224 -7.76916 -5.24513 -0.51197 0.43011 0.63364 0.74421 1.48117 1.49241 1.59630 1.83409 1.99434 2.48929 2.81892 3.31553 3.45373 3.55097 3.76180 3.80117 3.86580 4.09947 4.18329 4.28244 4.32401 4.50403 4.67833 4.74937 4.78813 4.86276 4.90638 4.95635 5.16658 5.23387 5.25666 5.36730 5.44530 5.46205 5.75519 6.23778 6.33842 6.95005 7.01100 7.67950 8.42773 9.25066 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.049583 B = 0.002703 C = 0.002663 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 564.571470 B =10356.293909 C =10511.375963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C -0.235 4.235 3 C -0.163 4.163 4 C 0.036 3.964 5 C 0.590 3.410 6 O -0.564 6.564 7 N -0.670 5.670 8 C 0.112 3.888 9 H 0.115 0.885 10 C -0.173 4.173 11 H 0.116 0.884 12 C 0.155 3.845 13 N -0.624 5.624 14 C -0.229 4.229 15 H 0.086 0.914 16 C -0.072 4.072 17 N -0.950 5.950 18 Si 0.986 3.014 19 H -0.266 1.266 20 H -0.291 1.291 21 H -0.293 1.293 22 C 0.155 3.845 23 C -0.169 4.169 24 H 0.128 0.872 25 N -0.555 5.555 26 S 0.539 5.461 27 H 0.096 0.904 28 H 0.091 0.909 29 H 0.091 0.909 30 H 0.169 0.831 31 H 0.417 0.583 32 H 0.110 0.890 33 H 0.001 0.999 34 H 0.249 0.751 35 H 0.027 0.973 36 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.820 -12.438 4.518 28.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.366 4.366 3 C -0.195 4.195 4 C -0.136 4.136 5 C 0.373 3.627 6 O -0.442 6.442 7 N -0.319 5.319 8 C 0.006 3.994 9 H 0.133 0.867 10 C -0.194 4.194 11 H 0.134 0.866 12 C 0.031 3.969 13 N -0.349 5.349 14 C -0.358 4.358 15 H 0.103 0.897 16 C -0.263 4.263 17 N -0.600 5.600 18 Si 0.814 3.186 19 H -0.191 1.191 20 H -0.218 1.218 21 H -0.220 1.220 22 C 0.029 3.971 23 C -0.190 4.190 24 H 0.146 0.854 25 N -0.392 5.392 26 S 0.694 5.306 27 H 0.115 0.885 28 H 0.110 0.890 29 H 0.109 0.891 30 H 0.186 0.814 31 H 0.254 0.746 32 H 0.127 0.873 33 H 0.019 0.981 34 H 0.059 0.941 35 H 0.044 0.956 36 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -23.987 -13.547 4.444 27.905 hybrid contribution 1.011 1.967 -0.208 2.222 sum -22.976 -11.580 4.236 26.075 Atomic orbital electron populations 1.20430 0.83302 1.05219 1.04579 1.26565 1.05059 0.99226 1.05751 1.21275 0.89866 1.02921 1.05426 1.20752 0.94611 0.89036 1.09234 1.17661 0.82224 0.87070 0.75751 1.90779 1.83948 1.17739 1.51720 1.45085 1.03978 1.10406 1.72396 1.21566 0.81668 0.93344 1.02848 0.86686 1.24328 0.95767 1.01841 0.97440 0.86623 1.22306 0.91037 0.92328 0.91265 1.46430 1.03606 1.81697 1.03190 1.19540 0.82788 1.38956 0.94508 0.89651 1.25635 1.02729 1.02972 0.95003 1.69748 1.34623 1.57051 0.98575 0.84892 0.79230 0.76778 0.77690 1.19084 1.21751 1.22048 1.21206 0.89368 0.94158 0.92343 1.24323 0.98985 1.02051 0.93655 0.85432 1.71953 1.32436 1.10446 1.24365 1.80157 0.85343 1.10466 1.54618 0.88479 0.89011 0.89083 0.81402 0.74584 0.87304 0.98127 0.94118 0.95554 0.91807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.42 10.46 71.24 0.75 0.33 16 2 C -0.24 -3.11 6.58 24.94 0.16 -2.94 16 3 C -0.16 -3.34 9.93 21.83 0.22 -3.13 16 4 C 0.04 0.92 6.66 42.12 0.28 1.20 16 5 C 0.59 18.96 7.81 86.74 0.68 19.63 16 6 O -0.56 -21.63 16.22 -3.96 -0.06 -21.70 16 7 N -0.67 -20.76 5.56 -445.56 -2.48 -23.24 16 8 C 0.11 4.07 5.97 44.99 0.27 4.34 16 9 H 0.12 4.65 7.40 -2.39 -0.02 4.64 16 10 C -0.17 -6.96 6.96 -9.89 -0.07 -7.03 16 11 H 0.12 4.34 8.14 -2.39 -0.02 4.32 16 12 C 0.16 7.91 6.43 85.80 0.55 8.46 16 13 N -0.62 -33.16 3.46 -678.18 -2.35 -35.51 16 14 C -0.23 -13.02 10.42 84.03 0.88 -12.15 16 15 H 0.09 4.61 7.83 -2.91 -0.02 4.59 16 16 C -0.07 -4.09 5.50 84.86 0.47 -3.62 16 17 N -0.95 -56.93 10.12 21.65 0.22 -56.71 16 18 Si 0.99 46.03 29.55 68.60 2.03 48.06 16 19 H -0.27 -11.70 7.11 99.48 0.71 -11.00 16 20 H -0.29 -13.46 7.11 99.48 0.71 -12.76 16 21 H -0.29 -13.74 7.11 99.48 0.71 -13.03 16 22 C 0.15 6.71 7.05 86.53 0.61 7.32 16 23 C -0.17 -6.26 7.06 -9.89 -0.07 -6.33 16 24 H 0.13 4.14 8.14 -2.38 -0.02 4.12 16 25 N -0.56 -12.28 10.71 -75.30 -0.81 -13.08 16 26 S 0.54 7.05 23.20 -56.49 -1.31 5.74 16 27 H 0.10 0.11 8.14 -2.39 -0.02 0.09 16 28 H 0.09 0.39 8.14 -2.39 -0.02 0.37 16 29 H 0.09 0.40 8.14 -2.39 -0.02 0.38 16 30 H 0.17 3.43 7.99 -2.91 -0.02 3.41 16 31 H 0.42 11.35 8.29 -92.70 -0.77 10.58 16 32 H 0.11 6.23 5.34 -2.39 -0.01 6.22 16 33 H 0.00 0.04 8.14 -2.39 -0.02 0.02 16 34 H 0.25 14.40 8.31 -92.71 -0.77 13.63 16 35 H 0.03 1.15 8.14 -2.39 -0.02 1.13 16 36 H 0.06 2.58 8.14 -2.39 -0.02 2.56 16 Total: -1.00 -71.40 321.27 0.31 -71.09 By element: Atomic # 1 Polarization: 18.93 SS G_CDS: 0.35 Total: 19.28 kcal Atomic # 6 Polarization: 1.35 SS G_CDS: 4.72 Total: 6.07 kcal Atomic # 7 Polarization: -123.13 SS G_CDS: -5.41 Total: -128.54 kcal Atomic # 8 Polarization: -21.63 SS G_CDS: -0.06 Total: -21.70 kcal Atomic # 14 Polarization: 46.03 SS G_CDS: 2.03 Total: 48.06 kcal Atomic # 16 Polarization: 7.05 SS G_CDS: -1.31 Total: 5.74 kcal Total: -71.40 0.31 -71.09 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958684114.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.439 kcal (2) G-P(sol) polarization free energy of solvation -71.398 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.090 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.349 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds