Wall clock time and date at job start Tue Mar 31 2020 06:36:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86798 * 120.00215 * 2 1 4 4 H 1.48506 * 109.46904 * 274.45085 * 3 2 1 5 5 H 1.48500 * 109.47002 * 34.45104 * 3 2 1 6 6 H 1.48502 * 109.47294 * 154.45403 * 3 2 1 7 7 C 1.38813 * 119.99431 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99372 * 164.49741 * 7 2 1 9 9 N 1.36930 * 120.00187 * 344.49960 * 7 2 1 10 10 C 1.47003 * 121.37908 * 335.97249 * 9 7 2 11 11 C 1.50322 * 109.16965 * 222.97228 * 10 9 7 12 12 C 1.29450 * 123.65194 * 349.02352 * 11 10 9 13 13 C 1.50694 * 117.69548 * 180.85932 * 12 11 10 14 14 N 1.46500 * 109.47558 * 94.99752 * 13 12 11 15 15 C 1.34775 * 120.00554 * 180.02562 * 14 13 12 16 16 O 1.21694 * 119.99725 * 0.02562 * 15 14 13 17 17 C 1.46678 * 120.00328 * 180.02562 * 15 14 13 18 18 C 1.35664 * 126.13315 * 180.02562 * 17 15 14 19 19 N 1.30934 * 114.19079 * 179.97438 * 18 17 15 20 20 C 1.29423 * 117.36892 * 359.97438 * 19 18 17 21 21 S 1.70959 * 110.38809 * 0.02562 * 20 19 18 22 22 C 1.49967 * 124.60909 * 1.13760 * 12 11 10 23 23 C 1.47343 * 121.37600 * 156.00258 * 9 7 2 24 24 H 0.97003 * 119.99461 * 0.02562 * 1 2 3 25 25 H 1.09001 * 109.52116 * 103.06052 * 10 9 7 26 26 H 1.08999 * 109.52010 * 342.88552 * 10 9 7 27 27 H 1.08004 * 118.17310 * 168.99982 * 11 10 9 28 28 H 1.09006 * 109.47008 * 334.99682 * 13 12 11 29 29 H 1.08994 * 109.47415 * 215.00135 * 13 12 11 30 30 H 0.97002 * 119.99328 * 359.97438 * 14 13 12 31 31 H 1.08004 * 122.90073 * 359.70153 * 18 17 15 32 32 H 1.08001 * 124.80961 * 179.97438 * 20 19 18 33 33 H 1.09001 * 109.31693 * 101.01176 * 22 12 11 34 34 H 1.09002 * 109.31236 * 220.43634 * 22 12 11 35 35 H 1.09001 * 109.77777 * 237.79162 * 23 9 7 36 36 H 1.09005 * 109.77540 * 358.59171 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4037 2.1007 -1.3959 5 1 1.4979 2.6236 0.7920 6 1 3.5917 1.4148 0.6038 7 6 2.0101 -1.2022 0.0005 8 1 3.0607 -1.2193 -0.2495 9 7 1.3628 -2.3663 0.3180 10 6 0.1446 -2.3649 1.1407 11 6 0.2249 -3.4817 2.1437 12 6 1.1206 -4.4156 2.1071 13 6 1.0643 -5.4821 3.1703 14 7 0.3204 -6.6380 2.6637 15 6 0.1411 -7.7200 3.4470 16 8 0.5967 -7.7366 4.5753 17 6 -0.6033 -8.8776 2.9395 18 6 -0.8569 -10.0252 3.6171 19 7 -1.5451 -10.9082 2.9382 20 6 -1.8940 -10.5917 1.7328 21 16 -1.3292 -9.0264 1.3409 22 6 2.2139 -4.5077 1.0847 23 6 1.8588 -3.6723 -0.1505 24 1 -0.4849 0.8401 -0.0004 25 1 -0.7265 -2.5108 0.5020 26 1 0.0588 -1.4119 1.6628 27 1 -0.5050 -3.5061 2.9393 28 1 0.5642 -5.0873 4.0547 29 1 2.0772 -5.7881 3.4319 30 1 -0.0437 -6.6243 1.7647 31 1 -0.5166 -10.1973 4.6276 32 1 -2.4610 -11.2267 1.0681 33 1 3.1443 -4.1404 1.5176 34 1 2.3437 -5.5487 0.7885 35 1 1.0844 -4.1746 -0.7302 36 1 2.7473 -3.5302 -0.7658 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001000490541.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:36:17 Heat of formation + Delta-G solvation = 51.931987 kcal Electronic energy + Delta-G solvation = -20315.207175 eV Core-core repulsion = 17120.371109 eV Total energy + Delta-G solvation = -3194.836066 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 293.094 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.36546 -39.27977 -37.77959 -35.06311 -33.03016 -31.32803 -30.62911 -29.76178 -27.35394 -26.06727 -24.25944 -22.84097 -21.96110 -21.10369 -20.29072 -19.21942 -17.71966 -17.15213 -16.22525 -15.78811 -15.57660 -15.16493 -14.91584 -14.45288 -14.32214 -14.11757 -13.84413 -13.64521 -13.46521 -13.01353 -12.33754 -12.13089 -11.92099 -11.62255 -11.43642 -10.96516 -10.76839 -10.53510 -10.40665 -10.35247 -10.06363 -9.90046 -9.88015 -9.66716 -9.44245 -9.11906 -8.73816 -8.14339 -6.80316 -5.84984 -3.23738 -0.07579 0.84794 1.23608 2.18485 2.45558 2.99755 3.34054 3.35146 3.42261 3.44608 3.93347 4.45294 4.63415 4.79263 4.96433 5.09141 5.27447 5.34320 5.51702 5.71633 5.73415 5.84893 5.99958 6.09116 6.25650 6.27405 6.44183 6.66481 6.80420 7.08643 7.17573 7.18628 7.24966 7.37876 7.66715 7.76239 7.97557 8.32619 9.14163 9.76848 10.34521 11.25567 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.035065 B = 0.003060 C = 0.002964 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 798.324884 B = 9149.002059 C = 9445.954504 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C -0.001 4.001 3 Si 0.905 3.095 4 H -0.288 1.288 5 H -0.289 1.289 6 H -0.279 1.279 7 C -0.247 4.247 8 H 0.069 0.931 9 N -0.595 5.595 10 C 0.193 3.807 11 C -0.121 4.121 12 C -0.170 4.170 13 C 0.157 3.843 14 N -0.712 5.712 15 C 0.591 3.409 16 O -0.530 6.530 17 C -0.286 4.286 18 C 0.112 3.888 19 N -0.477 5.477 20 C 0.028 3.972 21 S 0.176 5.824 22 C -0.090 4.090 23 C 0.144 3.856 24 H 0.254 0.746 25 H 0.042 0.958 26 H 0.094 0.906 27 H 0.095 0.905 28 H 0.070 0.930 29 H 0.070 0.930 30 H 0.400 0.600 31 H 0.189 0.811 32 H 0.206 0.794 33 H 0.066 0.934 34 H 0.052 0.948 35 H 0.024 0.976 36 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.619 -18.122 2.037 18.592 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.199 4.199 3 Si 0.734 3.266 4 H -0.215 1.215 5 H -0.215 1.215 6 H -0.205 1.205 7 C -0.376 4.376 8 H 0.087 0.913 9 N -0.318 5.318 10 C 0.068 3.932 11 C -0.141 4.141 12 C -0.170 4.170 13 C 0.035 3.965 14 N -0.363 5.363 15 C 0.376 3.624 16 O -0.408 6.408 17 C -0.410 4.410 18 C -0.046 4.046 19 N -0.190 5.190 20 C -0.266 4.266 21 S 0.430 5.570 22 C -0.130 4.130 23 C 0.017 3.983 24 H 0.064 0.936 25 H 0.060 0.940 26 H 0.112 0.888 27 H 0.113 0.887 28 H 0.088 0.912 29 H 0.089 0.911 30 H 0.234 0.766 31 H 0.206 0.794 32 H 0.222 0.778 33 H 0.084 0.916 34 H 0.071 0.929 35 H 0.042 0.958 36 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -3.629 -17.852 2.104 18.339 hybrid contribution 0.369 0.649 0.441 0.867 sum -3.260 -17.204 2.545 17.694 Atomic orbital electron populations 1.70007 1.05188 1.25548 1.54726 1.24990 0.95405 0.98332 1.01156 0.86241 0.79142 0.83580 0.77599 1.21474 1.21544 1.20454 1.19178 0.92256 0.84338 1.41841 0.91340 1.44127 1.29231 1.01218 1.57259 1.19773 0.88861 0.94790 0.89745 1.23326 0.95656 0.96574 0.98584 1.20485 1.00199 0.97248 0.99117 1.20545 0.96184 0.83962 0.95763 1.46134 1.56307 1.16170 1.17698 1.16750 0.79357 0.81154 0.85153 1.90845 1.50199 1.81311 1.18488 1.25919 1.13170 1.02568 0.99349 1.22262 0.94157 0.86836 1.01333 1.66267 1.13741 1.33009 1.05990 1.28845 1.02865 0.98522 0.96413 1.84178 1.45647 1.14925 1.12299 1.20797 0.96587 0.99041 0.96535 1.20993 0.97387 0.87182 0.92725 0.93586 0.93995 0.88783 0.88696 0.91206 0.91121 0.76553 0.79446 0.77757 0.91590 0.92937 0.95846 0.92392 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -25.59 11.08 55.49 0.61 -24.97 16 2 C 0.00 -0.03 5.01 -17.43 -0.09 -0.11 16 3 Si 0.90 21.32 29.58 -169.99 -5.03 16.29 16 4 H -0.29 -6.79 7.11 56.52 0.40 -6.38 16 5 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 6 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 7 C -0.25 -6.60 9.71 -15.06 -0.15 -6.75 16 8 H 0.07 1.80 7.88 -52.49 -0.41 1.38 16 9 N -0.60 -14.39 3.01 -173.56 -0.52 -14.91 16 10 C 0.19 4.41 5.23 -5.10 -0.03 4.38 16 11 C -0.12 -2.20 9.47 -35.78 -0.34 -2.53 16 12 C -0.17 -2.78 5.22 -100.99 -0.53 -3.31 16 13 C 0.16 2.27 5.66 -5.20 -0.03 2.24 16 14 N -0.71 -9.19 5.54 -62.80 -0.35 -9.54 16 15 C 0.59 8.07 7.79 -12.85 -0.10 7.97 16 16 O -0.53 -8.88 16.87 5.19 0.09 -8.80 16 17 C -0.29 -3.19 6.48 -37.10 -0.24 -3.43 16 18 C 0.11 1.21 11.09 -18.85 -0.21 1.00 16 19 N -0.48 -4.88 10.51 -15.38 -0.16 -5.04 16 20 C 0.03 0.21 12.22 51.75 0.63 0.84 16 21 S 0.18 1.40 22.35 -107.50 -2.40 -1.00 16 22 C -0.09 -1.51 5.95 -28.09 -0.17 -1.67 16 23 C 0.14 2.84 6.59 -3.43 -0.02 2.81 16 24 H 0.25 6.93 8.31 -40.82 -0.34 6.60 16 25 H 0.04 1.02 8.14 -51.93 -0.42 0.60 16 26 H 0.09 2.41 6.41 -51.93 -0.33 2.08 16 27 H 0.10 1.55 7.73 -52.48 -0.41 1.14 16 28 H 0.07 1.03 7.78 -51.93 -0.40 0.63 16 29 H 0.07 1.03 8.11 -51.93 -0.42 0.61 16 30 H 0.40 4.60 7.65 -40.82 -0.31 4.29 16 31 H 0.19 1.89 8.06 -52.48 -0.42 1.46 16 32 H 0.21 0.74 8.06 -52.49 -0.42 0.32 16 33 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 34 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.06 1.12 7.96 -51.93 -0.41 0.71 16 LS Contribution 321.19 15.07 4.84 4.84 Total: -1.00 -31.18 321.19 -8.56 -39.74 By element: Atomic # 1 Polarization: 6.31 SS G_CDS: -4.37 Total: 1.94 kcal Atomic # 6 Polarization: 2.71 SS G_CDS: -1.26 Total: 1.45 kcal Atomic # 7 Polarization: -54.04 SS G_CDS: -0.42 Total: -54.46 kcal Atomic # 8 Polarization: -8.88 SS G_CDS: 0.09 Total: -8.80 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.03 Total: 16.29 kcal Atomic # 16 Polarization: 1.40 SS G_CDS: -2.40 Total: -1.00 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -31.18 -8.56 -39.74 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001000490541.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.669 kcal (2) G-P(sol) polarization free energy of solvation -31.180 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.557 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.737 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.932 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds