Wall clock time and date at job start Tue Mar 31 2020 06:36:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86798 * 120.00215 * 2 1 4 4 H 1.48506 * 109.46904 * 274.45085 * 3 2 1 5 5 H 1.48500 * 109.47002 * 34.45104 * 3 2 1 6 6 H 1.48502 * 109.47294 * 154.45403 * 3 2 1 7 7 C 1.38813 * 119.99431 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99372 * 164.49741 * 7 2 1 9 9 N 1.36930 * 120.00187 * 344.49960 * 7 2 1 10 10 C 1.47003 * 121.37908 * 335.97249 * 9 7 2 11 11 C 1.50322 * 109.16965 * 222.97228 * 10 9 7 12 12 C 1.29450 * 123.65194 * 349.02352 * 11 10 9 13 13 C 1.50694 * 117.69548 * 180.85932 * 12 11 10 14 14 N 1.46500 * 109.47558 * 94.99752 * 13 12 11 15 15 C 1.34775 * 120.00554 * 180.02562 * 14 13 12 16 16 O 1.21694 * 119.99725 * 0.02562 * 15 14 13 17 17 C 1.46678 * 120.00328 * 180.02562 * 15 14 13 18 18 C 1.35664 * 126.13315 * 180.02562 * 17 15 14 19 19 N 1.30934 * 114.19079 * 179.97438 * 18 17 15 20 20 C 1.29423 * 117.36892 * 359.97438 * 19 18 17 21 21 S 1.70959 * 110.38809 * 0.02562 * 20 19 18 22 22 C 1.49967 * 124.60909 * 1.13760 * 12 11 10 23 23 C 1.47343 * 121.37600 * 156.00258 * 9 7 2 24 24 H 0.97003 * 119.99461 * 0.02562 * 1 2 3 25 25 H 1.09001 * 109.52116 * 103.06052 * 10 9 7 26 26 H 1.08999 * 109.52010 * 342.88552 * 10 9 7 27 27 H 1.08004 * 118.17310 * 168.99982 * 11 10 9 28 28 H 1.09006 * 109.47008 * 334.99682 * 13 12 11 29 29 H 1.08994 * 109.47415 * 215.00135 * 13 12 11 30 30 H 0.97002 * 119.99328 * 359.97438 * 14 13 12 31 31 H 1.08004 * 122.90073 * 359.70153 * 18 17 15 32 32 H 1.08001 * 124.80961 * 179.97438 * 20 19 18 33 33 H 1.09001 * 109.31693 * 101.01176 * 22 12 11 34 34 H 1.09002 * 109.31236 * 220.43634 * 22 12 11 35 35 H 1.09001 * 109.77777 * 237.79162 * 23 9 7 36 36 H 1.09005 * 109.77540 * 358.59171 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4037 2.1007 -1.3959 5 1 1.4979 2.6236 0.7920 6 1 3.5917 1.4148 0.6038 7 6 2.0101 -1.2022 0.0005 8 1 3.0607 -1.2193 -0.2495 9 7 1.3628 -2.3663 0.3180 10 6 0.1446 -2.3649 1.1407 11 6 0.2249 -3.4817 2.1437 12 6 1.1206 -4.4156 2.1071 13 6 1.0643 -5.4821 3.1703 14 7 0.3204 -6.6380 2.6637 15 6 0.1411 -7.7200 3.4470 16 8 0.5967 -7.7366 4.5753 17 6 -0.6033 -8.8776 2.9395 18 6 -0.8569 -10.0252 3.6171 19 7 -1.5451 -10.9082 2.9382 20 6 -1.8940 -10.5917 1.7328 21 16 -1.3292 -9.0264 1.3409 22 6 2.2139 -4.5077 1.0847 23 6 1.8588 -3.6723 -0.1505 24 1 -0.4849 0.8401 -0.0004 25 1 -0.7265 -2.5108 0.5020 26 1 0.0588 -1.4119 1.6628 27 1 -0.5050 -3.5061 2.9393 28 1 0.5642 -5.0873 4.0547 29 1 2.0772 -5.7881 3.4319 30 1 -0.0437 -6.6243 1.7647 31 1 -0.5166 -10.1973 4.6276 32 1 -2.4610 -11.2267 1.0681 33 1 3.1443 -4.1404 1.5176 34 1 2.3437 -5.5487 0.7885 35 1 1.0844 -4.1746 -0.7302 36 1 2.7473 -3.5302 -0.7658 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001000490541.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:36:17 Heat of formation + Delta-G solvation = 30.884819 kcal Electronic energy + Delta-G solvation = -20316.119849 eV Core-core repulsion = 17120.371109 eV Total energy + Delta-G solvation = -3195.748740 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 293.094 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.26773 -40.24793 -39.26797 -36.48039 -34.61991 -32.80587 -31.72981 -31.35587 -28.73512 -27.08964 -25.77457 -24.41135 -23.19064 -22.51456 -21.13523 -20.09057 -19.45573 -18.12669 -17.40252 -17.15402 -16.99559 -16.54602 -16.05829 -15.62142 -15.46475 -15.18172 -15.14275 -14.96856 -14.79206 -14.44208 -13.97874 -13.64280 -13.27449 -12.94980 -12.81161 -12.62081 -12.57798 -12.23859 -12.11497 -11.71041 -11.52484 -11.25842 -10.80961 -10.69141 -10.67762 -10.24057 -10.06963 -9.68588 -8.74683 -7.88452 -5.29187 -0.80150 0.16837 0.56034 1.12001 1.38068 1.46976 1.49194 1.58395 2.06587 2.23336 2.51535 3.29081 3.31255 3.60099 3.72060 3.86832 3.95177 4.14116 4.33614 4.41625 4.53265 4.62602 4.71892 4.82962 4.90762 4.99049 5.09128 5.18620 5.22734 5.39463 5.48099 5.61945 5.74780 6.14304 6.29379 6.34237 6.53903 6.95261 7.13935 7.83926 8.37314 9.20130 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.035065 B = 0.003060 C = 0.002964 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 798.324884 B = 9149.002059 C = 9445.954504 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.053 4.053 3 Si 0.966 3.034 4 H -0.286 1.286 5 H -0.294 1.294 6 H -0.272 1.272 7 C -0.257 4.257 8 H 0.070 0.930 9 N -0.616 5.616 10 C 0.204 3.796 11 C -0.138 4.138 12 C -0.143 4.143 13 C 0.167 3.833 14 N -0.706 5.706 15 C 0.595 3.405 16 O -0.568 6.568 17 C -0.318 4.318 18 C 0.113 3.887 19 N -0.504 5.504 20 C 0.045 3.955 21 S 0.218 5.782 22 C -0.085 4.085 23 C 0.138 3.862 24 H 0.250 0.750 25 H 0.017 0.983 26 H 0.057 0.943 27 H 0.114 0.886 28 H 0.068 0.932 29 H 0.075 0.925 30 H 0.408 0.592 31 H 0.185 0.815 32 H 0.246 0.754 33 H 0.065 0.935 34 H 0.087 0.913 35 H 0.030 0.970 36 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.345 -20.032 1.453 20.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.585 5.585 2 C -0.248 4.248 3 Si 0.795 3.205 4 H -0.213 1.213 5 H -0.220 1.220 6 H -0.196 1.196 7 C -0.387 4.387 8 H 0.088 0.912 9 N -0.340 5.340 10 C 0.079 3.921 11 C -0.159 4.159 12 C -0.143 4.143 13 C 0.044 3.956 14 N -0.357 5.357 15 C 0.381 3.619 16 O -0.449 6.449 17 C -0.443 4.443 18 C -0.045 4.045 19 N -0.218 5.218 20 C -0.249 4.249 21 S 0.473 5.527 22 C -0.124 4.124 23 C 0.013 3.987 24 H 0.059 0.941 25 H 0.034 0.966 26 H 0.075 0.925 27 H 0.131 0.869 28 H 0.086 0.914 29 H 0.094 0.906 30 H 0.244 0.756 31 H 0.202 0.798 32 H 0.261 0.739 33 H 0.083 0.917 34 H 0.106 0.894 35 H 0.048 0.952 36 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -3.349 -19.789 1.484 20.125 hybrid contribution 0.268 1.110 0.524 1.256 sum -3.082 -18.679 2.008 19.037 Atomic orbital electron populations 1.70160 1.06441 1.25749 1.56141 1.25715 0.96163 1.01256 1.01689 0.85274 0.78108 0.79797 0.77357 1.21261 1.22008 1.19643 1.19503 0.92562 0.85640 1.40970 0.91231 1.44409 1.29437 1.02165 1.57945 1.19414 0.87786 0.94923 0.89952 1.22991 0.97967 0.96045 0.98847 1.20592 0.98517 0.96602 0.98615 1.20340 0.96747 0.83745 0.94764 1.45953 1.56099 1.15596 1.18054 1.16984 0.78799 0.81562 0.84542 1.90820 1.51894 1.82119 1.20096 1.25678 1.14953 1.01938 1.01718 1.22337 0.93780 0.86926 1.01483 1.66334 1.14928 1.33274 1.07242 1.29579 1.00961 0.98538 0.95783 1.84032 1.44419 1.14731 1.09539 1.20738 0.96279 1.00361 0.94986 1.21187 0.97460 0.85740 0.94302 0.94132 0.96583 0.92454 0.86858 0.91386 0.90645 0.75557 0.79806 0.73852 0.91700 0.89428 0.95162 0.92221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -54.36 11.08 21.65 0.24 -54.12 16 2 C -0.05 -2.93 5.01 84.86 0.43 -2.51 16 3 Si 0.97 44.40 29.58 68.60 2.03 46.43 16 4 H -0.29 -12.94 7.11 99.48 0.71 -12.23 16 5 H -0.29 -13.58 7.11 99.48 0.71 -12.87 16 6 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 7 C -0.26 -13.85 9.71 84.03 0.82 -13.03 16 8 H 0.07 3.65 7.88 -2.91 -0.02 3.62 16 9 N -0.62 -29.96 3.01 -703.03 -2.11 -32.08 16 10 C 0.20 9.56 5.23 85.42 0.45 10.01 16 11 C -0.14 -4.95 9.47 27.11 0.26 -4.70 16 12 C -0.14 -4.41 5.22 -15.14 -0.08 -4.49 16 13 C 0.17 4.46 5.66 85.63 0.48 4.95 16 14 N -0.71 -16.76 5.54 -470.83 -2.61 -19.37 16 15 C 0.59 15.48 7.79 86.45 0.67 16.15 16 16 O -0.57 -18.76 16.87 -4.33 -0.07 -18.84 16 17 C -0.32 -6.60 6.48 23.88 0.15 -6.45 16 18 C 0.11 2.33 11.09 84.23 0.93 3.27 16 19 N -0.50 -9.22 10.51 -202.56 -2.13 -11.35 16 20 C 0.05 0.52 12.22 130.60 1.60 2.11 16 21 S 0.22 2.83 22.35 -56.49 -1.26 1.57 16 22 C -0.09 -2.62 5.95 29.71 0.18 -2.44 16 23 C 0.14 5.29 6.59 86.31 0.57 5.86 16 24 H 0.25 14.05 8.31 -92.71 -0.77 13.28 16 25 H 0.02 0.83 8.14 -2.39 -0.02 0.81 16 26 H 0.06 3.07 6.41 -2.39 -0.02 3.05 16 27 H 0.11 3.62 7.73 -2.91 -0.02 3.60 16 28 H 0.07 1.90 7.78 -2.38 -0.02 1.88 16 29 H 0.08 2.01 8.11 -2.39 -0.02 1.99 16 30 H 0.41 8.33 7.65 -92.71 -0.71 7.62 16 31 H 0.19 3.70 8.06 -2.91 -0.02 3.67 16 32 H 0.25 0.61 8.06 -2.91 -0.02 0.59 16 33 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 34 H 0.09 2.14 8.14 -2.39 -0.02 2.12 16 35 H 0.03 1.12 8.14 -2.39 -0.02 1.10 16 36 H 0.06 2.23 7.96 -2.38 -0.02 2.21 16 Total: -1.00 -68.74 321.19 0.93 -67.81 By element: Atomic # 1 Polarization: 10.82 SS G_CDS: 0.40 Total: 11.22 kcal Atomic # 6 Polarization: 2.28 SS G_CDS: 6.45 Total: 8.74 kcal Atomic # 7 Polarization: -110.31 SS G_CDS: -6.61 Total: -116.92 kcal Atomic # 8 Polarization: -18.76 SS G_CDS: -0.07 Total: -18.84 kcal Atomic # 14 Polarization: 44.40 SS G_CDS: 2.03 Total: 46.43 kcal Atomic # 16 Polarization: 2.83 SS G_CDS: -1.26 Total: 1.57 kcal Total: -68.74 0.93 -67.81 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001000490541.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.692 kcal (2) G-P(sol) polarization free energy of solvation -68.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.950 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.934 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.807 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds