Wall clock time and date at job start Tue Mar 31 2020 06:33:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86804 * 119.99613 * 2 1 4 4 H 1.48495 * 109.47006 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.47031 * 299.99992 * 3 2 1 6 6 H 1.48493 * 109.47107 * 60.00266 * 3 2 1 7 7 C 1.38809 * 120.00143 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99733 * 164.51471 * 7 2 1 9 9 N 1.36934 * 119.99814 * 344.51267 * 7 2 1 10 10 C 1.47004 * 121.37760 * 335.97601 * 9 7 2 11 11 C 1.50330 * 109.16260 * 222.97150 * 10 9 7 12 12 C 1.29452 * 123.65116 * 349.01076 * 11 10 9 13 13 C 1.50699 * 117.69181 * 180.86081 * 12 11 10 14 14 N 1.46495 * 109.46947 * 95.00964 * 13 12 11 15 15 C 1.34774 * 120.00316 * 180.02562 * 14 13 12 16 16 O 1.21634 * 119.99793 * 359.97438 * 15 14 13 17 17 C 1.47268 * 120.00443 * 179.97438 * 15 14 13 18 18 C 1.35210 * 123.14454 * 179.72875 * 17 15 14 19 19 S 1.70938 * 108.82918 * 179.87085 * 18 17 15 20 20 C 1.70777 * 91.12548 * 0.33314 * 19 18 17 21 21 N 1.28638 * 110.56121 * 359.80180 * 20 19 18 22 22 C 1.49971 * 124.61350 * 1.15086 * 12 11 10 23 23 C 1.47341 * 121.37388 * 155.99580 * 9 7 2 24 24 H 0.96998 * 120.00224 * 359.97438 * 1 2 3 25 25 H 1.08993 * 109.52419 * 103.06241 * 10 9 7 26 26 H 1.08998 * 109.52077 * 342.86874 * 10 9 7 27 27 H 1.07999 * 118.17340 * 169.00017 * 11 10 9 28 28 H 1.09004 * 109.47173 * 215.00484 * 13 12 11 29 29 H 1.08998 * 109.47299 * 335.00343 * 13 12 11 30 30 H 0.97005 * 120.00216 * 359.97438 * 14 13 12 31 31 H 1.08001 * 125.58340 * 0.02562 * 18 17 15 32 32 H 1.08010 * 124.71696 * 179.84209 * 20 19 18 33 33 H 1.08998 * 109.31561 * 101.00248 * 22 12 11 34 34 H 1.08991 * 109.31460 * 220.43316 * 22 12 11 35 35 H 1.09000 * 109.77864 * 237.78977 * 23 9 7 36 36 H 1.08999 * 109.77691 * 358.59247 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7101 1.3466 -0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8914 2.3964 1.2125 7 6 2.0104 -1.2021 -0.0005 8 1 3.0609 -1.2189 -0.2503 9 7 1.3630 -2.3666 0.3156 10 6 0.1445 -2.3660 1.1381 11 6 0.2249 -3.4839 2.1399 12 6 1.1205 -4.4178 2.1024 13 6 1.0641 -5.4853 3.1646 14 7 0.3204 -6.6407 2.6566 15 6 0.1410 -7.7236 3.4387 16 8 0.5970 -7.7417 4.5662 17 6 -0.6071 -8.8849 2.9283 18 6 -0.8200 -10.0048 3.6554 19 16 -1.7252 -11.1090 2.7155 20 6 -1.7587 -10.0165 1.4033 21 7 -1.1337 -8.9325 1.7018 22 6 2.2140 -4.5088 1.0801 23 6 1.8591 -3.6720 -0.1542 24 1 -0.4850 0.8400 0.0004 25 1 -0.7264 -2.5114 0.4990 26 1 0.0587 -1.4136 1.6612 27 1 -0.5052 -3.5092 2.9354 28 1 2.0771 -5.7916 3.4260 29 1 0.5639 -5.0915 4.0493 30 1 -0.0435 -6.6262 1.7575 31 1 -0.4768 -10.1730 4.6655 32 1 -2.2386 -10.2087 0.4549 33 1 3.1443 -4.1418 1.5136 34 1 2.3439 -5.5493 0.7828 35 1 1.0848 -4.1738 -0.7345 36 1 2.7476 -3.5292 -0.7692 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001000515250.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:33:13 Heat of formation + Delta-G solvation = 49.450835 kcal Electronic energy + Delta-G solvation = -20361.490423 eV Core-core repulsion = 17166.546766 eV Total energy + Delta-G solvation = -3194.943657 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 293.094 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.61308 -38.82766 -37.66047 -34.96611 -32.87646 -31.07841 -30.74377 -29.71387 -27.44954 -25.81234 -24.18837 -22.82635 -22.40740 -21.04087 -19.92615 -19.16363 -17.64995 -16.98260 -16.18962 -15.71690 -15.55799 -15.28915 -15.00556 -14.32776 -14.15225 -13.78168 -13.66787 -13.53158 -13.35814 -12.89897 -12.29151 -12.25232 -12.02982 -11.55416 -11.35399 -10.91996 -10.74802 -10.43647 -10.29461 -10.25762 -10.13722 -10.06846 -9.82340 -9.58888 -9.39519 -8.92752 -8.68505 -8.05788 -6.74612 -5.79839 -3.18631 0.22591 0.92174 1.27268 1.77026 2.61308 3.26609 3.37897 3.45614 3.47761 3.50434 3.92458 4.49449 4.71102 4.91230 5.00265 5.16417 5.35859 5.40195 5.53833 5.61193 5.82517 5.93879 6.08879 6.18237 6.35090 6.44166 6.53087 6.74179 6.88493 7.05724 7.17592 7.26143 7.33692 7.61904 7.73447 7.82705 8.17304 8.37846 9.19368 9.82134 10.40296 11.30636 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.037812 B = 0.002861 C = 0.002793 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 740.318800 B = 9783.579666 C =10022.657776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C -0.002 4.002 3 Si 0.905 3.095 4 H -0.278 1.278 5 H -0.291 1.291 6 H -0.289 1.289 7 C -0.245 4.245 8 H 0.069 0.931 9 N -0.596 5.596 10 C 0.194 3.806 11 C -0.122 4.122 12 C -0.167 4.167 13 C 0.156 3.844 14 N -0.700 5.700 15 C 0.588 3.412 16 O -0.542 6.542 17 C 0.009 3.991 18 C -0.224 4.224 19 S 0.203 5.797 20 C 0.001 3.999 21 N -0.439 5.439 22 C -0.090 4.090 23 C 0.144 3.856 24 H 0.253 0.747 25 H 0.042 0.958 26 H 0.094 0.906 27 H 0.094 0.906 28 H 0.068 0.932 29 H 0.068 0.932 30 H 0.411 0.589 31 H 0.190 0.810 32 H 0.206 0.794 33 H 0.065 0.935 34 H 0.053 0.947 35 H 0.024 0.976 36 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.445 -22.182 4.394 23.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.200 4.200 3 Si 0.735 3.265 4 H -0.203 1.203 5 H -0.218 1.218 6 H -0.216 1.216 7 C -0.374 4.374 8 H 0.087 0.913 9 N -0.319 5.319 10 C 0.069 3.931 11 C -0.143 4.143 12 C -0.167 4.167 13 C 0.034 3.966 14 N -0.350 5.350 15 C 0.371 3.629 16 O -0.420 6.420 17 C -0.126 4.126 18 C -0.366 4.366 19 S 0.458 5.542 20 C -0.299 4.299 21 N -0.153 5.153 22 C -0.129 4.129 23 C 0.017 3.983 24 H 0.063 0.937 25 H 0.060 0.940 26 H 0.111 0.889 27 H 0.112 0.888 28 H 0.087 0.913 29 H 0.086 0.914 30 H 0.247 0.753 31 H 0.207 0.793 32 H 0.223 0.777 33 H 0.083 0.917 34 H 0.071 0.929 35 H 0.042 0.958 36 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -4.546 -22.531 4.915 23.504 hybrid contribution 0.601 1.621 -0.058 1.730 sum -3.945 -20.910 4.857 21.826 Atomic orbital electron populations 1.70021 1.05164 1.25392 1.54918 1.24996 0.95410 0.98308 1.01282 0.86178 0.79249 0.83859 0.77242 1.20311 1.21763 1.21593 1.19230 0.92260 0.84328 1.41582 0.91297 1.44142 1.29215 1.01240 1.57285 1.19762 0.88825 0.94741 0.89762 1.23293 0.95694 0.96689 0.98649 1.20473 1.00123 0.97094 0.99052 1.20539 0.96131 0.84260 0.95704 1.46045 1.55091 1.15407 1.18432 1.17100 0.79399 0.81524 0.84874 1.90809 1.50803 1.81634 1.18789 1.20599 1.04590 0.97054 0.90374 1.26640 1.05133 0.97671 1.07147 1.82926 1.45922 1.19771 1.05623 1.28509 1.03587 0.92928 1.04876 1.66970 1.09440 1.23426 1.15506 1.20785 0.96513 0.99090 0.96512 1.20991 0.97361 0.87150 0.92764 0.93666 0.94049 0.88853 0.88768 0.91327 0.91401 0.75274 0.79318 0.77719 0.91688 0.92878 0.95785 0.92455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -26.21 11.08 55.49 0.61 -25.59 16 2 C 0.00 -0.06 5.01 -17.43 -0.09 -0.15 16 3 Si 0.90 21.76 29.58 -169.99 -5.03 16.73 16 4 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 5 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 6 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 7 C -0.24 -6.71 9.71 -15.06 -0.15 -6.86 16 8 H 0.07 1.86 7.88 -52.49 -0.41 1.44 16 9 N -0.60 -14.95 3.01 -173.57 -0.52 -15.47 16 10 C 0.19 4.62 5.23 -5.10 -0.03 4.60 16 11 C -0.12 -2.38 9.47 -35.78 -0.34 -2.71 16 12 C -0.17 -2.95 5.22 -100.99 -0.53 -3.47 16 13 C 0.16 2.45 5.66 -5.20 -0.03 2.43 16 14 N -0.70 -10.36 5.54 -62.62 -0.35 -10.71 16 15 C 0.59 8.92 7.80 -12.59 -0.10 8.82 16 16 O -0.54 -9.56 16.71 5.25 0.09 -9.47 16 17 C 0.01 0.11 6.70 -84.52 -0.57 -0.46 16 18 C -0.22 -2.18 10.62 29.65 0.31 -1.86 16 19 S 0.20 1.25 22.97 -107.50 -2.47 -1.21 16 20 C 0.00 0.01 12.17 51.42 0.63 0.63 16 21 N -0.44 -5.03 10.12 -12.36 -0.13 -5.16 16 22 C -0.09 -1.60 5.95 -28.09 -0.17 -1.77 16 23 C 0.14 3.00 6.59 -3.43 -0.02 2.98 16 24 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16 25 H 0.04 1.05 8.14 -51.93 -0.42 0.63 16 26 H 0.09 2.47 6.41 -51.93 -0.33 2.14 16 27 H 0.09 1.65 7.73 -52.49 -0.41 1.24 16 28 H 0.07 1.08 8.11 -51.93 -0.42 0.66 16 29 H 0.07 1.08 7.78 -51.93 -0.40 0.68 16 30 H 0.41 5.89 7.98 -40.82 -0.33 5.56 16 31 H 0.19 1.67 8.03 -52.49 -0.42 1.24 16 32 H 0.21 0.84 8.06 -52.48 -0.42 0.42 16 33 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 34 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 35 H 0.02 0.50 8.14 -51.93 -0.42 0.07 16 36 H 0.06 1.16 7.96 -51.93 -0.41 0.75 16 LS Contribution 321.27 15.07 4.84 4.84 Total: -1.00 -32.11 321.27 -8.40 -40.51 By element: Atomic # 1 Polarization: 7.74 SS G_CDS: -4.39 Total: 3.36 kcal Atomic # 6 Polarization: 3.24 SS G_CDS: -1.07 Total: 2.17 kcal Atomic # 7 Polarization: -56.55 SS G_CDS: -0.38 Total: -56.93 kcal Atomic # 8 Polarization: -9.56 SS G_CDS: 0.09 Total: -9.47 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.03 Total: 16.73 kcal Atomic # 16 Polarization: 1.25 SS G_CDS: -2.47 Total: -1.21 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -32.11 -8.40 -40.51 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001000515250.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.964 kcal (2) G-P(sol) polarization free energy of solvation -32.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.854 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.513 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.451 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds