Wall clock time and date at job start Tue Mar 31 2020 06:33:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86804 * 119.99613 * 2 1 4 4 H 1.48495 * 109.47006 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.47031 * 299.99992 * 3 2 1 6 6 H 1.48493 * 109.47107 * 60.00266 * 3 2 1 7 7 C 1.38809 * 120.00143 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99733 * 164.51471 * 7 2 1 9 9 N 1.36934 * 119.99814 * 344.51267 * 7 2 1 10 10 C 1.47004 * 121.37760 * 335.97601 * 9 7 2 11 11 C 1.50330 * 109.16260 * 222.97150 * 10 9 7 12 12 C 1.29452 * 123.65116 * 349.01076 * 11 10 9 13 13 C 1.50699 * 117.69181 * 180.86081 * 12 11 10 14 14 N 1.46495 * 109.46947 * 95.00964 * 13 12 11 15 15 C 1.34774 * 120.00316 * 180.02562 * 14 13 12 16 16 O 1.21634 * 119.99793 * 359.97438 * 15 14 13 17 17 C 1.47268 * 120.00443 * 179.97438 * 15 14 13 18 18 C 1.35210 * 123.14454 * 179.72875 * 17 15 14 19 19 S 1.70938 * 108.82918 * 179.87085 * 18 17 15 20 20 C 1.70777 * 91.12548 * 0.33314 * 19 18 17 21 21 N 1.28638 * 110.56121 * 359.80180 * 20 19 18 22 22 C 1.49971 * 124.61350 * 1.15086 * 12 11 10 23 23 C 1.47341 * 121.37388 * 155.99580 * 9 7 2 24 24 H 0.96998 * 120.00224 * 359.97438 * 1 2 3 25 25 H 1.08993 * 109.52419 * 103.06241 * 10 9 7 26 26 H 1.08998 * 109.52077 * 342.86874 * 10 9 7 27 27 H 1.07999 * 118.17340 * 169.00017 * 11 10 9 28 28 H 1.09004 * 109.47173 * 215.00484 * 13 12 11 29 29 H 1.08998 * 109.47299 * 335.00343 * 13 12 11 30 30 H 0.97005 * 120.00216 * 359.97438 * 14 13 12 31 31 H 1.08001 * 125.58340 * 0.02562 * 18 17 15 32 32 H 1.08010 * 124.71696 * 179.84209 * 20 19 18 33 33 H 1.08998 * 109.31561 * 101.00248 * 22 12 11 34 34 H 1.08991 * 109.31460 * 220.43316 * 22 12 11 35 35 H 1.09000 * 109.77864 * 237.78977 * 23 9 7 36 36 H 1.08999 * 109.77691 * 358.59247 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7101 1.3466 -0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8914 2.3964 1.2125 7 6 2.0104 -1.2021 -0.0005 8 1 3.0609 -1.2189 -0.2503 9 7 1.3630 -2.3666 0.3156 10 6 0.1445 -2.3660 1.1381 11 6 0.2249 -3.4839 2.1399 12 6 1.1205 -4.4178 2.1024 13 6 1.0641 -5.4853 3.1646 14 7 0.3204 -6.6407 2.6566 15 6 0.1410 -7.7236 3.4387 16 8 0.5970 -7.7417 4.5662 17 6 -0.6071 -8.8849 2.9283 18 6 -0.8200 -10.0048 3.6554 19 16 -1.7252 -11.1090 2.7155 20 6 -1.7587 -10.0165 1.4033 21 7 -1.1337 -8.9325 1.7018 22 6 2.2140 -4.5088 1.0801 23 6 1.8591 -3.6720 -0.1542 24 1 -0.4850 0.8400 0.0004 25 1 -0.7264 -2.5114 0.4990 26 1 0.0587 -1.4136 1.6612 27 1 -0.5052 -3.5092 2.9354 28 1 2.0771 -5.7916 3.4260 29 1 0.5639 -5.0915 4.0493 30 1 -0.0435 -6.6262 1.7575 31 1 -0.4768 -10.1730 4.6655 32 1 -2.2386 -10.2087 0.4549 33 1 3.1443 -4.1418 1.5136 34 1 2.3439 -5.5493 0.7828 35 1 1.0848 -4.1738 -0.7345 36 1 2.7476 -3.5292 -0.7692 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001000515250.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:33:13 Heat of formation + Delta-G solvation = 27.208591 kcal Electronic energy + Delta-G solvation = -20362.454919 eV Core-core repulsion = 17166.546766 eV Total energy + Delta-G solvation = -3195.908153 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 293.094 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.52642 -39.93551 -39.17335 -36.47822 -34.56320 -32.68149 -31.67333 -31.42285 -28.90622 -26.98802 -25.63327 -24.43966 -23.57267 -22.68876 -20.90363 -19.96490 -19.47305 -18.01521 -17.41335 -17.09439 -16.95059 -16.59952 -16.22737 -15.69318 -15.53128 -15.22639 -15.11423 -14.82793 -14.39942 -14.28707 -13.96711 -13.63276 -13.28495 -12.97999 -12.92384 -12.81531 -12.62130 -12.21990 -12.10610 -11.72224 -11.45524 -11.25017 -10.83812 -10.72704 -10.70417 -10.28644 -9.89067 -9.69431 -8.76623 -7.88980 -5.30627 -0.46410 0.33866 0.64076 0.93263 1.16384 1.46355 1.48209 1.58552 2.27515 2.39159 2.50749 3.15619 3.28049 3.59466 3.81820 3.93752 3.98386 4.16511 4.37267 4.40138 4.50894 4.59795 4.69624 4.81125 4.87814 4.90060 5.07611 5.18945 5.27230 5.37802 5.45666 5.60724 5.73318 6.13178 6.26780 6.33007 6.58889 7.04851 7.12409 7.81930 8.36390 9.19864 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.037812 B = 0.002861 C = 0.002793 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 740.318800 B = 9783.579666 C =10022.657776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.940 5.940 2 C -0.055 4.055 3 Si 0.969 3.031 4 H -0.267 1.267 5 H -0.292 1.292 6 H -0.291 1.291 7 C -0.256 4.256 8 H 0.071 0.929 9 N -0.615 5.615 10 C 0.206 3.794 11 C -0.141 4.141 12 C -0.141 4.141 13 C 0.165 3.835 14 N -0.698 5.698 15 C 0.586 3.414 16 O -0.575 6.575 17 C -0.023 4.023 18 C -0.238 4.238 19 S 0.301 5.699 20 C -0.007 4.007 21 N -0.474 5.474 22 C -0.084 4.084 23 C 0.139 3.861 24 H 0.250 0.750 25 H 0.014 0.986 26 H 0.059 0.941 27 H 0.112 0.888 28 H 0.074 0.926 29 H 0.066 0.934 30 H 0.414 0.586 31 H 0.192 0.808 32 H 0.239 0.761 33 H 0.067 0.933 34 H 0.083 0.917 35 H 0.026 0.974 36 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.234 -24.782 4.422 25.527 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.586 5.586 2 C -0.250 4.250 3 Si 0.797 3.203 4 H -0.191 1.191 5 H -0.219 1.219 6 H -0.218 1.218 7 C -0.386 4.386 8 H 0.089 0.911 9 N -0.339 5.339 10 C 0.081 3.919 11 C -0.161 4.161 12 C -0.142 4.142 13 C 0.043 3.957 14 N -0.347 5.347 15 C 0.371 3.629 16 O -0.456 6.456 17 C -0.158 4.158 18 C -0.381 4.381 19 S 0.557 5.443 20 C -0.305 4.305 21 N -0.189 5.189 22 C -0.122 4.122 23 C 0.014 3.986 24 H 0.059 0.941 25 H 0.032 0.968 26 H 0.077 0.923 27 H 0.130 0.870 28 H 0.092 0.908 29 H 0.085 0.915 30 H 0.251 0.749 31 H 0.209 0.791 32 H 0.255 0.745 33 H 0.085 0.915 34 H 0.102 0.898 35 H 0.044 0.956 36 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -4.334 -25.178 4.924 26.019 hybrid contribution 0.496 2.215 -0.109 2.272 sum -3.838 -22.964 4.815 23.775 Atomic orbital electron populations 1.70180 1.06523 1.25739 1.56200 1.25761 0.96197 1.01382 1.01639 0.85172 0.78546 0.79813 0.76724 1.19118 1.21869 1.21819 1.19557 0.92586 0.85538 1.40940 0.91104 1.44421 1.29391 1.02184 1.57918 1.19396 0.87737 0.94876 0.89901 1.22975 0.97921 0.96247 0.98962 1.20599 0.98528 0.96442 0.98587 1.20344 0.96681 0.84007 0.94713 1.45925 1.55055 1.15161 1.18597 1.17502 0.78949 0.82075 0.84349 1.90775 1.52334 1.82399 1.20084 1.20292 1.06704 0.97018 0.91794 1.26932 1.05171 0.98208 1.07781 1.82619 1.42612 1.16450 1.02611 1.29118 1.02260 0.92444 1.06719 1.66947 1.11069 1.25550 1.15366 1.20719 0.96335 1.00167 0.95017 1.21166 0.97378 0.85790 0.94270 0.94112 0.96845 0.92308 0.87019 0.90782 0.91531 0.74907 0.79073 0.74530 0.91473 0.89829 0.95584 0.92059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.93 11.08 21.65 0.24 -55.69 16 2 C -0.06 -3.11 5.01 84.86 0.43 -2.68 16 3 Si 0.97 45.41 29.58 68.60 2.03 47.43 16 4 H -0.27 -11.87 7.11 99.48 0.71 -11.17 16 5 H -0.29 -13.62 7.11 99.48 0.71 -12.91 16 6 H -0.29 -13.64 7.11 99.48 0.71 -12.94 16 7 C -0.26 -14.25 9.71 84.03 0.82 -13.43 16 8 H 0.07 3.82 7.88 -2.91 -0.02 3.80 16 9 N -0.62 -31.38 3.01 -703.04 -2.11 -33.49 16 10 C 0.21 10.18 5.23 85.42 0.45 10.63 16 11 C -0.14 -5.49 9.47 27.11 0.26 -5.23 16 12 C -0.14 -4.84 5.22 -15.14 -0.08 -4.92 16 13 C 0.17 5.01 5.66 85.63 0.48 5.49 16 14 N -0.70 -20.04 5.54 -470.26 -2.61 -22.65 16 15 C 0.59 17.50 7.80 86.62 0.68 18.18 16 16 O -0.58 -20.20 16.71 -4.14 -0.07 -20.26 16 17 C -0.02 -0.55 6.70 40.56 0.27 -0.28 16 18 C -0.24 -4.20 10.62 67.12 0.71 -3.49 16 19 S 0.30 2.66 22.97 -56.49 -1.30 1.37 16 20 C -0.01 -0.08 12.17 130.71 1.59 1.51 16 21 N -0.47 -10.09 10.12 -193.02 -1.95 -12.04 16 22 C -0.08 -2.84 5.95 29.72 0.18 -2.67 16 23 C 0.14 5.73 6.59 86.31 0.57 6.30 16 24 H 0.25 14.37 8.31 -92.71 -0.77 13.60 16 25 H 0.01 0.74 8.14 -2.39 -0.02 0.72 16 26 H 0.06 3.27 6.41 -2.39 -0.02 3.26 16 27 H 0.11 3.93 7.73 -2.91 -0.02 3.91 16 28 H 0.07 2.20 8.11 -2.38 -0.02 2.18 16 29 H 0.07 2.06 7.78 -2.39 -0.02 2.05 16 30 H 0.41 11.48 7.98 -92.70 -0.74 10.74 16 31 H 0.19 3.13 8.03 -2.91 -0.02 3.11 16 32 H 0.24 1.03 8.06 -2.91 -0.02 1.00 16 33 H 0.07 2.31 8.14 -2.39 -0.02 2.30 16 34 H 0.08 2.38 8.14 -2.39 -0.02 2.36 16 35 H 0.03 1.06 8.14 -2.39 -0.02 1.04 16 36 H 0.06 2.44 7.96 -2.39 -0.02 2.42 16 Total: -1.00 -71.41 321.27 0.94 -70.46 By element: Atomic # 1 Polarization: 15.09 SS G_CDS: 0.37 Total: 15.46 kcal Atomic # 6 Polarization: 3.07 SS G_CDS: 6.35 Total: 9.41 kcal Atomic # 7 Polarization: -117.44 SS G_CDS: -6.43 Total: -123.87 kcal Atomic # 8 Polarization: -20.20 SS G_CDS: -0.07 Total: -20.26 kcal Atomic # 14 Polarization: 45.41 SS G_CDS: 2.03 Total: 47.43 kcal Atomic # 16 Polarization: 2.66 SS G_CDS: -1.30 Total: 1.37 kcal Total: -71.41 0.94 -70.46 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001000515250.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.672 kcal (2) G-P(sol) polarization free energy of solvation -71.407 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.265 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.943 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.464 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds