Wall clock time and date at job start Tue Mar 31 2020 06:34:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86795 * 120.00063 * 2 1 4 4 H 1.48505 * 109.47514 * 274.45668 * 3 2 1 5 5 H 1.48501 * 109.47415 * 34.46006 * 3 2 1 6 6 H 1.48496 * 109.47175 * 154.45816 * 3 2 1 7 7 C 1.38810 * 119.99844 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00206 * 164.49597 * 7 2 1 9 9 N 1.36939 * 119.99774 * 344.48214 * 7 2 1 10 10 C 1.47002 * 121.38032 * 335.99040 * 9 7 2 11 11 C 1.50325 * 109.16712 * 222.96540 * 10 9 7 12 12 C 1.29455 * 123.64933 * 349.01593 * 11 10 9 13 13 C 1.50699 * 117.69520 * 180.85907 * 12 11 10 14 14 N 1.46493 * 109.46957 * 95.00167 * 13 12 11 15 15 C 1.34779 * 119.99948 * 180.02562 * 14 13 12 16 16 O 1.21631 * 120.00056 * 0.27654 * 15 14 13 17 17 C 1.47101 * 120.00038 * 180.02562 * 15 14 13 18 18 C 1.38389 * 127.99541 * 179.70529 * 17 15 14 19 19 C 1.37579 * 111.25785 * 179.88629 * 18 17 15 20 20 N 1.29555 * 117.95318 * 0.43286 * 19 18 17 21 21 S 1.56309 * 110.37806 * 359.75424 * 20 19 18 22 22 C 1.49974 * 124.61147 * 1.14644 * 12 11 10 23 23 C 1.47344 * 121.37126 * 156.00303 * 9 7 2 24 24 H 0.97007 * 119.99802 * 359.97438 * 1 2 3 25 25 H 1.08997 * 109.52525 * 103.05342 * 10 9 7 26 26 H 1.09005 * 109.52019 * 342.87003 * 10 9 7 27 27 H 1.07995 * 118.17162 * 168.99725 * 11 10 9 28 28 H 1.08999 * 109.46798 * 335.00243 * 13 12 11 29 29 H 1.09004 * 109.47172 * 215.00631 * 13 12 11 30 30 H 0.97003 * 120.00272 * 0.02562 * 14 13 12 31 31 H 1.07999 * 124.37289 * 359.97438 * 18 17 15 32 32 H 1.08004 * 121.02033 * 180.16242 * 19 18 17 33 33 H 1.08992 * 109.32044 * 101.00471 * 22 12 11 34 34 H 1.09006 * 109.30925 * 220.43627 * 22 12 11 35 35 H 1.08995 * 109.78152 * 237.79296 * 23 9 7 36 36 H 1.09004 * 109.77908 * 358.60766 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4035 2.1009 -1.3958 5 1 1.4980 2.6236 0.7922 6 1 3.5916 1.4147 0.6036 7 6 2.0102 -1.2021 -0.0005 8 1 3.0608 -1.2191 -0.2506 9 7 1.3629 -2.3666 0.3162 10 6 0.1447 -2.3657 1.1390 11 6 0.2251 -3.4833 2.1411 12 6 1.1208 -4.4172 2.1037 13 6 1.0647 -5.4844 3.1662 14 7 0.3208 -6.6399 2.6588 15 6 0.1415 -7.7225 3.4413 16 8 0.5931 -7.7382 4.5705 17 6 -0.6050 -8.8831 2.9316 18 6 -0.8804 -10.0721 3.5837 19 6 -1.6082 -10.9227 2.7839 20 7 -1.9131 -10.5218 1.5903 21 16 -1.3522 -9.0846 1.3390 22 6 2.2141 -4.5085 1.0812 23 6 1.8589 -3.6721 -0.1533 24 1 -0.4850 0.8401 0.0004 25 1 -0.7264 -2.5112 0.5002 26 1 0.0589 -1.4131 1.6618 27 1 -0.5048 -3.5082 2.9367 28 1 0.5646 -5.0903 4.0509 29 1 2.0776 -5.7906 3.4275 30 1 -0.0428 -6.6259 1.7596 31 1 -0.5661 -10.3021 4.5910 32 1 -1.9121 -11.8966 3.1386 33 1 3.1445 -4.1414 1.5143 34 1 2.3438 -5.5493 0.7842 35 1 1.0845 -4.1741 -0.7332 36 1 2.7474 -3.5296 -0.7685 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001000742927.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:34:27 Heat of formation + Delta-G solvation = 28.538074 kcal Electronic energy + Delta-G solvation = -20297.958777 eV Core-core repulsion = 17102.108274 eV Total energy + Delta-G solvation = -3195.850502 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 293.094 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.03243 -39.99020 -39.23913 -36.46314 -34.60784 -32.94515 -32.28788 -31.40104 -28.88200 -27.09763 -25.65410 -24.38755 -23.24344 -22.56247 -21.21958 -19.79578 -19.41942 -18.20749 -17.37731 -17.04827 -16.99353 -16.50886 -16.18463 -15.62097 -15.49531 -15.21107 -15.17435 -14.75551 -14.44370 -14.23987 -13.96247 -13.62642 -13.25943 -12.93263 -12.80079 -12.57755 -12.41308 -12.22236 -12.08636 -11.76366 -11.69513 -11.37835 -11.22374 -10.82781 -10.67530 -10.22184 -9.82891 -9.66674 -8.73480 -7.87533 -5.28246 -0.76738 0.24156 0.86966 1.13757 1.21586 1.47478 1.49570 1.58806 1.98578 2.22326 2.52241 3.29924 3.58589 3.64285 3.86477 3.97686 4.02427 4.09826 4.44224 4.55544 4.62439 4.72427 4.76433 4.85524 4.88712 4.92989 5.11023 5.20396 5.24597 5.41300 5.48890 5.50134 5.62875 5.76969 6.16631 6.33757 6.35264 6.96565 7.14938 7.85133 8.38368 9.20982 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.034598 B = 0.003055 C = 0.002956 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 809.090951 B = 9161.977750 C = 9470.048666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.054 4.054 3 Si 0.966 3.034 4 H -0.286 1.286 5 H -0.294 1.294 6 H -0.271 1.271 7 C -0.256 4.256 8 H 0.070 0.930 9 N -0.616 5.616 10 C 0.204 3.796 11 C -0.138 4.138 12 C -0.143 4.143 13 C 0.167 3.833 14 N -0.706 5.706 15 C 0.597 3.403 16 O -0.564 6.564 17 C -0.290 4.290 18 C -0.103 4.103 19 C 0.063 3.937 20 N -0.542 5.542 21 S 0.442 5.558 22 C -0.085 4.085 23 C 0.137 3.863 24 H 0.249 0.751 25 H 0.016 0.984 26 H 0.057 0.943 27 H 0.115 0.885 28 H 0.070 0.930 29 H 0.077 0.923 30 H 0.409 0.591 31 H 0.189 0.811 32 H 0.216 0.784 33 H 0.065 0.935 34 H 0.089 0.911 35 H 0.030 0.970 36 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.968 -20.481 5.196 21.221 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.585 5.585 2 C -0.249 4.249 3 Si 0.795 3.205 4 H -0.213 1.213 5 H -0.220 1.220 6 H -0.196 1.196 7 C -0.386 4.386 8 H 0.088 0.912 9 N -0.340 5.340 10 C 0.079 3.921 11 C -0.159 4.159 12 C -0.143 4.143 13 C 0.045 3.955 14 N -0.357 5.357 15 C 0.382 3.618 16 O -0.444 6.444 17 C -0.424 4.424 18 C -0.139 4.139 19 C -0.129 4.129 20 N -0.372 5.372 21 S 0.597 5.403 22 C -0.124 4.124 23 C 0.012 3.988 24 H 0.058 0.942 25 H 0.033 0.967 26 H 0.075 0.925 27 H 0.133 0.867 28 H 0.088 0.912 29 H 0.095 0.905 30 H 0.246 0.754 31 H 0.206 0.794 32 H 0.233 0.767 33 H 0.083 0.917 34 H 0.107 0.893 35 H 0.048 0.952 36 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -2.415 -20.017 3.909 20.538 hybrid contribution 0.386 0.720 1.247 1.490 sum -2.029 -19.298 5.156 20.077 Atomic orbital electron populations 1.70163 1.06444 1.25729 1.56191 1.25712 0.96157 1.01255 1.01740 0.85275 0.78123 0.79817 0.77327 1.21329 1.22014 1.19605 1.19507 0.92560 0.85629 1.40914 0.91227 1.44418 1.29447 1.02171 1.57945 1.19420 0.87748 0.94982 0.89989 1.22990 0.98009 0.96023 0.98838 1.20600 0.98476 0.96620 0.98639 1.20352 0.96824 0.83629 0.94735 1.45938 1.56009 1.15534 1.18183 1.16967 0.78810 0.81474 0.84503 1.90805 1.51655 1.82040 1.19902 1.26792 1.10827 1.00524 1.04254 1.22425 0.97602 0.90683 1.03237 1.22725 0.98498 1.03996 0.87637 1.72257 1.26829 1.14458 1.23663 1.81749 1.38662 1.08851 1.11048 1.20744 0.96316 1.00400 0.94940 1.21197 0.97438 0.85765 0.94382 0.94153 0.96659 0.92473 0.86742 0.91210 0.90463 0.75445 0.79401 0.76726 0.91661 0.89306 0.95191 0.92280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -54.51 11.08 21.65 0.24 -54.27 16 2 C -0.05 -2.96 5.01 84.86 0.42 -2.54 16 3 Si 0.97 44.46 29.58 68.60 2.03 46.49 16 4 H -0.29 -13.01 7.11 99.48 0.71 -12.30 16 5 H -0.29 -13.59 7.11 99.48 0.71 -12.89 16 6 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 7 C -0.26 -13.82 9.71 84.03 0.82 -13.00 16 8 H 0.07 3.65 7.88 -2.91 -0.02 3.63 16 9 N -0.62 -29.96 3.01 -703.01 -2.11 -32.08 16 10 C 0.20 9.52 5.23 85.42 0.45 9.96 16 11 C -0.14 -4.90 9.47 27.11 0.26 -4.64 16 12 C -0.14 -4.33 5.22 -15.14 -0.08 -4.41 16 13 C 0.17 4.29 5.66 85.63 0.48 4.78 16 14 N -0.71 -16.00 5.54 -470.44 -2.61 -18.61 16 15 C 0.60 14.64 7.80 86.57 0.68 15.31 16 16 O -0.56 -17.59 16.96 -4.13 -0.07 -17.66 16 17 C -0.29 -5.65 6.76 24.63 0.17 -5.49 16 18 C -0.10 -1.60 10.40 22.15 0.23 -1.37 16 19 C 0.06 0.86 11.14 84.87 0.95 1.80 16 20 N -0.54 -9.79 11.29 -85.48 -0.97 -10.75 16 21 S 0.44 7.41 22.81 -56.49 -1.29 6.12 16 22 C -0.09 -2.59 5.95 29.72 0.18 -2.42 16 23 C 0.14 5.25 6.59 86.32 0.57 5.82 16 24 H 0.25 14.08 8.31 -92.70 -0.77 13.30 16 25 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 26 H 0.06 3.05 6.41 -2.38 -0.02 3.04 16 27 H 0.11 3.59 7.73 -2.91 -0.02 3.56 16 28 H 0.07 1.86 7.78 -2.39 -0.02 1.84 16 29 H 0.08 1.96 8.11 -2.38 -0.02 1.94 16 30 H 0.41 7.99 7.84 -92.71 -0.73 7.26 16 31 H 0.19 2.34 8.06 -2.91 -0.02 2.32 16 32 H 0.22 1.34 8.06 -2.91 -0.02 1.32 16 33 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 34 H 0.09 2.12 8.14 -2.38 -0.02 2.10 16 35 H 0.03 1.11 8.14 -2.39 -0.02 1.09 16 36 H 0.06 2.21 7.96 -2.39 -0.02 2.19 16 Total: -1.00 -67.71 321.25 0.72 -66.99 By element: Atomic # 1 Polarization: 9.57 SS G_CDS: 0.38 Total: 9.96 kcal Atomic # 6 Polarization: -1.30 SS G_CDS: 5.11 Total: 3.81 kcal Atomic # 7 Polarization: -110.26 SS G_CDS: -5.45 Total: -115.70 kcal Atomic # 8 Polarization: -17.59 SS G_CDS: -0.07 Total: -17.66 kcal Atomic # 14 Polarization: 44.46 SS G_CDS: 2.03 Total: 46.49 kcal Atomic # 16 Polarization: 7.41 SS G_CDS: -1.29 Total: 6.12 kcal Total: -67.71 0.72 -66.99 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001000742927.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.530 kcal (2) G-P(sol) polarization free energy of solvation -67.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.820 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.992 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds