Wall clock time and date at job start Tue Mar 31 2020 06:36:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86807 * 120.00137 * 2 1 4 4 H 1.48495 * 109.46984 * 239.99671 * 3 2 1 5 5 H 1.48500 * 109.46904 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47058 * 119.99430 * 3 2 1 7 7 C 1.38810 * 119.99875 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00327 * 164.52980 * 7 2 1 9 9 N 1.36939 * 120.00352 * 344.52484 * 7 2 1 10 10 C 1.47010 * 121.37262 * 335.97266 * 9 7 2 11 11 C 1.50319 * 109.16396 * 222.96294 * 10 9 7 12 12 C 1.29457 * 123.65117 * 349.28755 * 11 10 9 13 13 C 1.50694 * 117.69284 * 180.57773 * 12 11 10 14 14 N 1.46502 * 109.47861 * 94.99351 * 13 12 11 15 15 C 1.34772 * 120.00569 * 179.97438 * 14 13 12 16 16 O 1.21619 * 119.99850 * 0.02562 * 15 14 13 17 17 C 1.47255 * 120.00182 * 179.97438 * 15 14 13 18 18 N 1.30556 * 125.54156 * 359.69738 * 17 15 14 19 19 C 1.30702 * 115.90522 * 179.78198 * 18 17 15 20 20 C 1.34231 * 115.78352 * 0.51123 * 19 18 17 21 21 S 1.71066 * 109.09148 * 359.72924 * 20 19 18 22 22 C 1.49964 * 124.61613 * 0.32872 * 12 11 10 23 23 C 1.47338 * 121.37669 * 155.98495 * 9 7 2 24 24 H 0.97002 * 119.99820 * 0.02562 * 1 2 3 25 25 H 1.09004 * 109.52256 * 103.05651 * 10 9 7 26 26 H 1.08999 * 109.52111 * 342.87265 * 10 9 7 27 27 H 1.08003 * 118.17335 * 168.99584 * 11 10 9 28 28 H 1.09006 * 109.47402 * 214.99724 * 13 12 11 29 29 H 1.09004 * 109.47463 * 334.99170 * 13 12 11 30 30 H 0.96998 * 119.99289 * 0.02562 * 14 13 12 31 31 H 1.08002 * 122.10615 * 180.22171 * 19 18 17 32 32 H 1.08006 * 125.45347 * 179.72365 * 20 19 18 33 33 H 1.08995 * 109.43781 * 221.06658 * 22 12 11 34 34 H 1.09004 * 109.12988 * 101.67266 * 22 12 11 35 35 H 1.09002 * 109.78070 * 237.79078 * 23 9 7 36 36 H 1.09002 * 109.77840 * 358.60673 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1040 1.6963 -1.2124 5 1 1.2852 2.7465 -0.0006 6 1 3.1039 1.6965 1.2126 7 6 2.0102 -1.2021 0.0005 8 1 3.0609 -1.2193 -0.2489 9 7 1.3628 -2.3665 0.3175 10 6 0.1442 -2.3652 1.1398 11 6 0.2243 -3.4823 2.1424 12 6 1.1230 -4.4135 2.1086 13 6 1.0698 -5.4771 3.1748 14 7 0.3296 -6.6368 2.6714 15 6 0.1545 -7.7176 3.4574 16 8 0.6105 -7.7299 4.5848 17 6 -0.5900 -8.8830 2.9516 18 7 -1.1292 -8.9832 1.7668 19 6 -1.7449 -10.1079 1.5129 20 6 -1.7507 -11.0080 2.5087 21 16 -0.9043 -10.3651 3.8491 22 6 2.2100 -4.5114 1.0801 23 6 1.8589 -3.6722 -0.1514 24 1 -0.4850 0.8401 -0.0004 25 1 -0.7267 -2.5110 0.5007 26 1 0.0583 -1.4124 1.6622 27 1 -0.5059 -3.5069 2.9378 28 1 2.0837 -5.7793 3.4375 29 1 0.5684 -5.0815 4.0581 30 1 -0.0338 -6.6271 1.7722 31 1 -2.2230 -10.2989 0.5635 32 1 -2.2155 -11.9822 2.4698 33 1 2.3355 -5.5525 0.7830 34 1 3.1429 -4.1472 1.5106 35 1 1.0845 -4.1744 -0.7314 36 1 2.7475 -3.5299 -0.7663 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001001299862.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:36:21 Heat of formation + Delta-G solvation = 52.931253 kcal Electronic energy + Delta-G solvation = -20304.045173 eV Core-core repulsion = 17109.252439 eV Total energy + Delta-G solvation = -3194.792735 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 293.094 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.33721 -39.19700 -37.74380 -35.01972 -32.96779 -31.26882 -30.56064 -29.70657 -27.43311 -26.11722 -24.12833 -22.77413 -22.13847 -21.09653 -20.08588 -18.88447 -17.67194 -17.24208 -15.97151 -15.83398 -15.68034 -15.30801 -15.00593 -14.31876 -14.17754 -13.81540 -13.70264 -13.56877 -13.37114 -12.93999 -12.27655 -12.06012 -11.84556 -11.57391 -11.37478 -10.91590 -10.73913 -10.66271 -10.40766 -10.34264 -10.10582 -10.02482 -9.83429 -9.61188 -9.31677 -9.01491 -8.69054 -8.08156 -6.75528 -5.80431 -3.19282 -0.05365 0.83361 1.38383 2.10053 2.56930 3.04086 3.36140 3.39029 3.44582 3.45965 4.00691 4.49022 4.74024 4.79561 5.01021 5.11521 5.32591 5.38623 5.56213 5.69146 5.78161 5.89154 6.06212 6.15997 6.32979 6.34441 6.50076 6.72776 6.87057 7.10936 7.15902 7.24119 7.31312 7.48179 7.71520 7.80922 8.00996 8.37317 9.18688 9.81426 10.39520 11.30069 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.038825 B = 0.002895 C = 0.002831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 721.005087 B = 9669.608172 C = 9887.080562 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C -0.001 4.001 3 Si 0.905 3.095 4 H -0.283 1.283 5 H -0.290 1.290 6 H -0.284 1.284 7 C -0.247 4.247 8 H 0.068 0.932 9 N -0.595 5.595 10 C 0.194 3.806 11 C -0.120 4.120 12 C -0.168 4.168 13 C 0.156 3.844 14 N -0.691 5.691 15 C 0.592 3.408 16 O -0.534 6.534 17 C -0.014 4.014 18 N -0.424 5.424 19 C 0.030 3.970 20 C -0.284 4.284 21 S 0.243 5.757 22 C -0.090 4.090 23 C 0.144 3.856 24 H 0.255 0.745 25 H 0.042 0.958 26 H 0.094 0.906 27 H 0.095 0.905 28 H 0.072 0.928 29 H 0.071 0.929 30 H 0.413 0.587 31 H 0.179 0.821 32 H 0.184 0.816 33 H 0.054 0.946 34 H 0.065 0.935 35 H 0.024 0.976 36 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.533 -21.054 5.474 22.039 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.199 4.199 3 Si 0.735 3.265 4 H -0.209 1.209 5 H -0.216 1.216 6 H -0.211 1.211 7 C -0.376 4.376 8 H 0.086 0.914 9 N -0.318 5.318 10 C 0.069 3.931 11 C -0.141 4.141 12 C -0.169 4.169 13 C 0.034 3.966 14 N -0.342 5.342 15 C 0.374 3.626 16 O -0.411 6.411 17 C -0.289 4.289 18 N -0.142 5.142 19 C -0.127 4.127 20 C -0.425 4.425 21 S 0.498 5.502 22 C -0.130 4.130 23 C 0.017 3.983 24 H 0.065 0.935 25 H 0.060 0.940 26 H 0.112 0.888 27 H 0.113 0.887 28 H 0.090 0.910 29 H 0.089 0.911 30 H 0.249 0.751 31 H 0.196 0.804 32 H 0.201 0.799 33 H 0.072 0.928 34 H 0.083 0.917 35 H 0.042 0.958 36 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -2.975 -20.759 6.936 22.088 hybrid contribution -0.398 0.520 -1.338 1.490 sum -3.374 -20.238 5.598 21.267 Atomic orbital electron populations 1.69997 1.05173 1.25650 1.54692 1.24988 0.95398 0.98303 1.01193 0.86317 0.78821 0.83237 0.78100 1.20932 1.21627 1.21056 1.19145 0.92224 0.84367 1.41885 0.91382 1.44121 1.29195 1.01213 1.57307 1.19772 0.88864 0.94735 0.89771 1.23315 0.95512 0.96660 0.98615 1.20456 1.00223 0.97191 0.99010 1.20605 0.96252 0.83866 0.95863 1.46006 1.54903 1.14982 1.18298 1.16764 0.79561 0.81256 0.85047 1.90854 1.50456 1.81405 1.18424 1.27825 1.06566 1.00390 0.94121 1.66829 1.08336 1.23014 1.16019 1.21763 1.01266 0.88178 1.01501 1.26928 1.09152 1.07170 0.99217 1.84061 1.43591 1.08189 1.14367 1.20760 0.96617 0.99114 0.96464 1.20955 0.97410 0.87130 0.92781 0.93536 0.94006 0.88811 0.88695 0.91022 0.91105 0.75095 0.80425 0.79865 0.92788 0.91704 0.95831 0.92412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -26.04 11.08 55.49 0.61 -25.43 16 2 C 0.00 -0.02 5.01 -17.43 -0.09 -0.11 16 3 Si 0.91 21.62 29.58 -169.99 -5.03 16.59 16 4 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 5 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 6 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 7 C -0.25 -6.72 9.71 -15.06 -0.15 -6.87 16 8 H 0.07 1.81 7.88 -52.48 -0.41 1.40 16 9 N -0.60 -14.77 3.01 -173.67 -0.52 -15.29 16 10 C 0.19 4.54 5.23 -5.10 -0.03 4.51 16 11 C -0.12 -2.27 9.47 -35.78 -0.34 -2.61 16 12 C -0.17 -2.87 5.23 -101.00 -0.53 -3.40 16 13 C 0.16 2.33 5.66 -5.20 -0.03 2.30 16 14 N -0.69 -9.69 5.54 -62.62 -0.35 -10.03 16 15 C 0.59 8.53 7.81 -12.60 -0.10 8.43 16 16 O -0.53 -8.91 16.94 5.26 0.09 -8.82 16 17 C -0.01 -0.17 7.46 -14.43 -0.11 -0.28 16 18 N -0.42 -5.01 10.24 -11.51 -0.12 -5.13 16 19 C 0.03 0.26 11.24 -19.44 -0.22 0.05 16 20 C -0.28 -2.04 11.09 29.32 0.33 -1.71 16 21 S 0.24 2.21 23.03 -107.50 -2.48 -0.27 16 22 C -0.09 -1.57 5.94 -28.18 -0.17 -1.74 16 23 C 0.14 2.95 6.58 -3.53 -0.02 2.93 16 24 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 25 H 0.04 1.05 8.14 -51.93 -0.42 0.63 16 26 H 0.09 2.45 6.41 -51.93 -0.33 2.12 16 27 H 0.10 1.60 7.73 -52.48 -0.41 1.20 16 28 H 0.07 1.06 8.11 -51.93 -0.42 0.64 16 29 H 0.07 1.06 7.78 -51.93 -0.40 0.66 16 30 H 0.41 5.59 8.12 -40.82 -0.33 5.26 16 31 H 0.18 1.10 8.06 -52.49 -0.42 0.68 16 32 H 0.18 0.72 8.06 -52.48 -0.42 0.29 16 33 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 35 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.06 1.15 7.96 -51.93 -0.41 0.74 16 LS Contribution 322.15 15.07 4.85 4.85 Total: -1.00 -30.90 322.15 -8.77 -39.67 By element: Atomic # 1 Polarization: 6.73 SS G_CDS: -4.39 Total: 2.33 kcal Atomic # 6 Polarization: 2.96 SS G_CDS: -1.45 Total: 1.51 kcal Atomic # 7 Polarization: -55.51 SS G_CDS: -0.37 Total: -55.88 kcal Atomic # 8 Polarization: -8.91 SS G_CDS: 0.09 Total: -8.82 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.03 Total: 16.59 kcal Atomic # 16 Polarization: 2.21 SS G_CDS: -2.48 Total: -0.27 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -30.90 -8.77 -39.67 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001001299862.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.603 kcal (2) G-P(sol) polarization free energy of solvation -30.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.672 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.931 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds