Wall clock time and date at job start Tue Mar 31 2020 06:36:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86802 * 120.00272 * 2 1 4 4 H 1.48493 * 109.47276 * 240.00322 * 3 2 1 5 5 H 1.48504 * 109.46937 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.46864 * 120.00325 * 3 2 1 7 7 C 1.38813 * 119.99952 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00359 * 170.15270 * 7 2 1 9 9 N 1.36943 * 119.99856 * 350.15444 * 7 2 1 10 10 C 1.47166 * 120.70794 * 151.06554 * 9 7 2 11 11 C 1.53887 * 108.02583 * 132.75100 * 10 9 7 12 12 H 1.08998 * 112.57632 * 182.22565 * 11 10 9 13 13 C 1.54134 * 107.71185 * 306.32427 * 11 10 9 14 14 C 1.54282 * 104.88884 * 89.41458 * 13 11 10 15 15 C 1.54548 * 104.84760 * 359.80470 * 14 13 11 16 16 H 1.08999 * 112.18000 * 146.41295 * 15 14 13 17 17 C 1.49239 * 120.76707 * 331.14563 * 9 7 2 18 18 N 1.48304 * 107.20836 * 58.36210 * 11 10 9 19 19 C 1.34784 * 128.07635 * 106.70242 * 18 11 10 20 20 O 1.21685 * 119.99608 * 183.42745 * 19 18 11 21 21 C 1.46678 * 119.99615 * 3.42171 * 19 18 11 22 22 C 1.35672 * 126.12470 * 173.40017 * 21 19 18 23 23 N 1.30944 * 114.18931 * 179.74151 * 22 21 19 24 24 C 1.29431 * 117.36460 * 359.97438 * 23 22 21 25 25 S 1.70960 * 110.39104 * 0.02562 * 24 23 22 26 26 H 0.97002 * 119.99309 * 359.97438 * 1 2 3 27 27 H 1.09003 * 109.74876 * 13.12313 * 10 9 7 28 28 H 1.08993 * 109.79254 * 252.40707 * 10 9 7 29 29 H 1.08999 * 110.50475 * 330.47789 * 13 11 10 30 30 H 1.08997 * 110.27788 * 208.22975 * 13 11 10 31 31 H 1.09007 * 110.36003 * 240.96752 * 14 13 11 32 32 H 1.08992 * 110.46019 * 118.69507 * 14 13 11 33 33 H 1.09008 * 110.51566 * 107.82600 * 17 9 7 34 34 H 1.08997 * 109.75318 * 346.60129 * 17 9 7 35 35 H 1.07992 * 122.90410 * 359.75457 * 22 21 19 36 36 H 1.07996 * 124.80680 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2852 2.7465 0.0006 6 1 3.1040 1.6962 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0783 -1.2091 -0.1605 9 7 1.3406 -2.3795 0.2017 10 6 1.8344 -3.6353 -0.3854 11 6 1.8174 -4.7133 0.7127 12 1 2.2078 -5.6701 0.3659 13 6 2.6074 -4.1672 1.9182 14 6 1.5600 -3.4279 2.7765 15 6 0.2302 -3.5912 2.0062 16 1 -0.6266 -3.6663 2.6758 17 6 0.0935 -2.4174 1.0205 18 7 0.4209 -4.8213 1.2000 19 6 -0.4660 -5.8095 0.9690 20 8 -1.6027 -5.7184 1.3937 21 6 -0.0610 -6.9947 0.2056 22 6 -0.8055 -8.1115 0.0077 23 7 -0.2153 -9.0282 -0.7175 24 6 0.9768 -8.7687 -1.1496 25 16 1.4764 -7.2200 -0.6254 26 1 -0.4849 0.8401 0.0004 27 1 2.8524 -3.4965 -0.7495 28 1 1.1869 -3.9377 -1.2083 29 1 3.3817 -3.4758 1.5858 30 1 3.0497 -4.9877 2.4832 31 1 1.8194 -2.3729 2.8660 32 1 1.4852 -3.8844 3.7634 33 1 -0.7774 -2.5713 0.3832 34 1 -0.0135 -1.4836 1.5723 35 1 -1.7990 -8.2338 0.4131 36 1 1.5718 -9.4359 -1.7555 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001017388122.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:36:10 Heat of formation + Delta-G solvation = 60.079850 kcal Electronic energy + Delta-G solvation = -22021.615006 eV Core-core repulsion = 18827.132258 eV Total energy + Delta-G solvation = -3194.482748 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 293.094 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.33328 -39.57266 -37.61080 -34.11955 -31.74883 -31.32622 -30.47053 -29.99646 -26.59478 -25.77458 -23.78731 -23.27334 -21.94176 -20.61212 -19.62384 -19.23354 -18.10096 -16.83526 -16.09888 -15.94253 -15.26970 -14.96227 -14.57260 -14.40196 -14.01081 -13.92272 -13.44898 -13.08286 -12.99182 -12.90597 -12.33891 -12.00995 -11.62441 -11.53818 -11.18272 -10.90377 -10.78394 -10.59558 -10.42031 -10.10118 -10.01436 -9.82357 -9.75121 -9.56146 -9.43382 -9.09869 -8.62598 -8.34339 -6.76622 -5.87042 -3.34575 0.27098 1.18113 1.58181 2.53187 3.17314 3.31883 3.37797 3.38742 3.39311 4.21345 4.38285 4.64462 4.92159 5.08775 5.17759 5.23654 5.31201 5.32916 5.43201 5.66253 5.69495 5.94298 6.02292 6.07889 6.21602 6.29022 6.33232 6.48908 6.52644 6.65418 6.84647 7.20811 7.49900 7.54056 7.66736 7.89594 8.28198 8.35328 9.05169 9.67967 10.27059 11.21335 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.027322 B = 0.004994 C = 0.004801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1024.557650 B = 5605.126474 C = 5831.225450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.007 3.993 3 Si 0.906 3.094 4 H -0.283 1.283 5 H -0.290 1.290 6 H -0.283 1.283 7 C -0.255 4.255 8 H 0.068 0.932 9 N -0.588 5.588 10 C 0.140 3.860 11 C 0.105 3.895 12 H 0.081 0.919 13 C -0.109 4.109 14 C -0.112 4.112 15 C 0.108 3.892 16 H 0.091 0.909 17 C 0.173 3.827 18 N -0.601 5.601 19 C 0.606 3.394 20 O -0.538 6.538 21 C -0.273 4.273 22 C 0.104 3.896 23 N -0.480 5.480 24 C -0.005 4.005 25 S 0.192 5.808 26 H 0.257 0.743 27 H 0.067 0.933 28 H 0.020 0.980 29 H 0.087 0.913 30 H 0.055 0.945 31 H 0.090 0.910 32 H 0.053 0.947 33 H 0.030 0.970 34 H 0.097 0.903 35 H 0.186 0.814 36 H 0.198 0.802 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.102 -12.964 1.390 14.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.192 4.192 3 Si 0.736 3.264 4 H -0.209 1.209 5 H -0.216 1.216 6 H -0.209 1.209 7 C -0.384 4.384 8 H 0.086 0.914 9 N -0.312 5.312 10 C 0.012 3.988 11 C -0.001 4.001 12 H 0.098 0.902 13 C -0.148 4.148 14 C -0.150 4.150 15 C 0.005 3.995 16 H 0.109 0.891 17 C 0.047 3.953 18 N -0.333 5.333 19 C 0.393 3.607 20 O -0.417 6.417 21 C -0.397 4.397 22 C -0.053 4.053 23 N -0.193 5.193 24 C -0.298 4.298 25 S 0.447 5.553 26 H 0.067 0.933 27 H 0.086 0.914 28 H 0.038 0.962 29 H 0.106 0.894 30 H 0.073 0.927 31 H 0.108 0.892 32 H 0.072 0.928 33 H 0.048 0.952 34 H 0.115 0.885 35 H 0.203 0.797 36 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges 6.024 -12.785 1.252 14.188 hybrid contribution -0.406 0.598 0.071 0.727 sum 5.617 -12.186 1.323 13.484 Atomic orbital electron populations 1.69950 1.05262 1.25832 1.53860 1.25139 0.95402 0.98367 1.00338 0.86324 0.78778 0.83215 0.78101 1.20900 1.21618 1.20913 1.19100 0.90672 0.83457 1.45216 0.91431 1.44523 1.27642 1.02657 1.56408 1.21437 0.98590 0.86905 0.91822 1.23284 0.81344 0.97841 0.97679 0.90191 1.22230 0.98198 0.99234 0.95090 1.22330 0.93958 1.02154 0.96590 1.23324 0.97879 0.84455 0.93875 0.89130 1.21700 0.88023 0.94482 0.91090 1.49107 1.13172 1.20770 1.50272 1.16261 0.84414 0.80330 0.79650 1.90815 1.18417 1.79323 1.53191 1.25907 0.99670 1.02450 1.11667 1.22186 1.01004 0.86979 0.95116 1.66328 1.08589 1.32237 1.12170 1.29158 0.95972 1.01886 1.02827 1.84378 1.15015 1.12787 1.43117 0.93328 0.91444 0.96176 0.89439 0.92654 0.89154 0.92811 0.95153 0.88510 0.79737 0.78491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -25.15 10.96 55.49 0.61 -24.55 16 2 C 0.01 0.17 5.10 -17.43 -0.09 0.08 16 3 Si 0.91 20.55 29.56 -169.99 -5.03 15.52 16 4 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 5 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 6 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 7 C -0.26 -6.38 9.65 -15.06 -0.15 -6.53 16 8 H 0.07 1.63 7.85 -52.49 -0.41 1.22 16 9 N -0.59 -13.47 2.31 -169.36 -0.39 -13.87 16 10 C 0.14 2.66 6.01 -3.22 -0.02 2.65 16 11 C 0.10 1.67 3.54 -65.88 -0.23 1.44 16 12 H 0.08 1.09 3.93 -23.78 -0.09 1.00 16 13 C -0.11 -1.63 6.16 -25.47 -0.16 -1.79 16 14 C -0.11 -1.84 6.19 -25.25 -0.16 -1.99 16 15 C 0.11 2.06 4.06 -65.66 -0.27 1.79 16 16 H 0.09 1.73 7.96 -51.93 -0.41 1.31 16 17 C 0.17 3.97 4.69 -2.06 -0.01 3.96 16 18 N -0.60 -10.92 2.74 -154.79 -0.42 -11.35 16 19 C 0.61 11.35 7.88 -12.85 -0.10 11.25 16 20 O -0.54 -11.59 17.21 5.20 0.09 -11.50 16 21 C -0.27 -4.21 6.41 -37.09 -0.24 -4.45 16 22 C 0.10 1.51 11.10 -18.85 -0.21 1.30 16 23 N -0.48 -6.47 10.51 -15.38 -0.16 -6.63 16 24 C 0.00 -0.05 12.22 51.75 0.63 0.58 16 25 S 0.19 2.24 18.93 -107.50 -2.03 0.21 16 26 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 27 H 0.07 1.18 7.97 -51.93 -0.41 0.77 16 28 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 29 H 0.09 1.35 7.83 -51.93 -0.41 0.94 16 30 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.09 1.61 7.86 -51.93 -0.41 1.21 16 32 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.03 0.79 8.14 -51.92 -0.42 0.37 16 34 H 0.10 2.43 6.37 -51.93 -0.33 2.10 16 35 H 0.19 2.51 8.06 -52.49 -0.42 2.09 16 36 H 0.20 1.32 8.06 -52.49 -0.42 0.90 16 LS Contribution 303.32 15.07 4.57 4.57 Total: -1.00 -30.42 303.32 -7.91 -38.33 By element: Atomic # 1 Polarization: 5.12 SS G_CDS: -4.15 Total: 0.97 kcal Atomic # 6 Polarization: 9.28 SS G_CDS: -0.99 Total: 8.29 kcal Atomic # 7 Polarization: -56.02 SS G_CDS: -0.37 Total: -56.38 kcal Atomic # 8 Polarization: -11.59 SS G_CDS: 0.09 Total: -11.50 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -5.03 Total: 15.52 kcal Atomic # 16 Polarization: 2.24 SS G_CDS: -2.03 Total: 0.21 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -30.42 -7.91 -38.33 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001017388122.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.405 kcal (2) G-P(sol) polarization free energy of solvation -30.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.910 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.325 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds