Wall clock time and date at job start Tue Mar 31 2020 06:36:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86802 * 120.00272 * 2 1 4 4 H 1.48493 * 109.47276 * 240.00322 * 3 2 1 5 5 H 1.48504 * 109.46937 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.46864 * 120.00325 * 3 2 1 7 7 C 1.38813 * 119.99952 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00359 * 170.15270 * 7 2 1 9 9 N 1.36943 * 119.99856 * 350.15444 * 7 2 1 10 10 C 1.47166 * 120.70794 * 151.06554 * 9 7 2 11 11 C 1.53887 * 108.02583 * 132.75100 * 10 9 7 12 12 H 1.08998 * 112.57632 * 182.22565 * 11 10 9 13 13 C 1.54134 * 107.71185 * 306.32427 * 11 10 9 14 14 C 1.54282 * 104.88884 * 89.41458 * 13 11 10 15 15 C 1.54548 * 104.84760 * 359.80470 * 14 13 11 16 16 H 1.08999 * 112.18000 * 146.41295 * 15 14 13 17 17 C 1.49239 * 120.76707 * 331.14563 * 9 7 2 18 18 N 1.48304 * 107.20836 * 58.36210 * 11 10 9 19 19 C 1.34784 * 128.07635 * 106.70242 * 18 11 10 20 20 O 1.21685 * 119.99608 * 183.42745 * 19 18 11 21 21 C 1.46678 * 119.99615 * 3.42171 * 19 18 11 22 22 C 1.35672 * 126.12470 * 173.40017 * 21 19 18 23 23 N 1.30944 * 114.18931 * 179.74151 * 22 21 19 24 24 C 1.29431 * 117.36460 * 359.97438 * 23 22 21 25 25 S 1.70960 * 110.39104 * 0.02562 * 24 23 22 26 26 H 0.97002 * 119.99309 * 359.97438 * 1 2 3 27 27 H 1.09003 * 109.74876 * 13.12313 * 10 9 7 28 28 H 1.08993 * 109.79254 * 252.40707 * 10 9 7 29 29 H 1.08999 * 110.50475 * 330.47789 * 13 11 10 30 30 H 1.08997 * 110.27788 * 208.22975 * 13 11 10 31 31 H 1.09007 * 110.36003 * 240.96752 * 14 13 11 32 32 H 1.08992 * 110.46019 * 118.69507 * 14 13 11 33 33 H 1.09008 * 110.51566 * 107.82600 * 17 9 7 34 34 H 1.08997 * 109.75318 * 346.60129 * 17 9 7 35 35 H 1.07992 * 122.90410 * 359.75457 * 22 21 19 36 36 H 1.07996 * 124.80680 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2852 2.7465 0.0006 6 1 3.1040 1.6962 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0783 -1.2091 -0.1605 9 7 1.3406 -2.3795 0.2017 10 6 1.8344 -3.6353 -0.3854 11 6 1.8174 -4.7133 0.7127 12 1 2.2078 -5.6701 0.3659 13 6 2.6074 -4.1672 1.9182 14 6 1.5600 -3.4279 2.7765 15 6 0.2302 -3.5912 2.0062 16 1 -0.6266 -3.6663 2.6758 17 6 0.0935 -2.4174 1.0205 18 7 0.4209 -4.8213 1.2000 19 6 -0.4660 -5.8095 0.9690 20 8 -1.6027 -5.7184 1.3937 21 6 -0.0610 -6.9947 0.2056 22 6 -0.8055 -8.1115 0.0077 23 7 -0.2153 -9.0282 -0.7175 24 6 0.9768 -8.7687 -1.1496 25 16 1.4764 -7.2200 -0.6254 26 1 -0.4849 0.8401 0.0004 27 1 2.8524 -3.4965 -0.7495 28 1 1.1869 -3.9377 -1.2083 29 1 3.3817 -3.4758 1.5858 30 1 3.0497 -4.9877 2.4832 31 1 1.8194 -2.3729 2.8660 32 1 1.4852 -3.8844 3.7634 33 1 -0.7774 -2.5713 0.3832 34 1 -0.0135 -1.4836 1.5723 35 1 -1.7990 -8.2338 0.4131 36 1 1.5718 -9.4359 -1.7555 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001017388122.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:36:10 Heat of formation + Delta-G solvation = 40.275792 kcal Electronic energy + Delta-G solvation = -22022.473774 eV Core-core repulsion = 18827.132258 eV Total energy + Delta-G solvation = -3195.341517 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 293.094 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.75555 -40.69844 -39.08324 -35.91599 -33.19034 -33.00972 -32.05040 -31.20749 -28.21737 -27.01560 -25.34891 -24.85037 -23.38053 -21.98411 -20.92868 -20.43337 -19.61935 -18.33165 -17.61187 -17.23282 -16.83195 -16.41726 -16.18370 -15.61204 -15.30876 -15.08726 -14.95621 -14.76294 -14.44455 -14.35239 -13.81694 -13.54658 -13.20702 -12.90355 -12.71669 -12.60504 -12.31193 -12.18833 -12.09304 -11.84649 -11.67955 -11.26779 -11.19481 -10.64618 -10.61994 -10.48411 -10.13347 -9.85804 -8.66366 -7.84142 -5.34404 -0.77541 0.16168 0.57572 1.40198 1.51936 1.53014 1.59541 1.78829 2.07774 2.52564 3.20191 3.33957 3.40598 3.50608 3.75102 3.85397 4.03675 4.12618 4.19165 4.29643 4.33738 4.52511 4.58543 4.79855 4.81627 4.96964 5.01272 5.06407 5.08831 5.18794 5.35312 5.54473 5.56518 5.67485 6.34610 6.44312 6.57537 6.91108 7.08782 7.77540 8.35395 9.22678 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.027322 B = 0.004994 C = 0.004801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1024.557650 B = 5605.126474 C = 5831.225450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.945 5.945 2 C -0.051 4.051 3 Si 0.970 3.030 4 H -0.276 1.276 5 H -0.304 1.304 6 H -0.272 1.272 7 C -0.251 4.251 8 H 0.083 0.917 9 N -0.600 5.600 10 C 0.135 3.865 11 C 0.113 3.887 12 H 0.112 0.888 13 C -0.103 4.103 14 C -0.104 4.104 15 C 0.110 3.890 16 H 0.082 0.918 17 C 0.186 3.814 18 N -0.605 5.605 19 C 0.602 3.398 20 O -0.581 6.581 21 C -0.316 4.316 22 C 0.114 3.886 23 N -0.503 5.503 24 C 0.025 3.975 25 S 0.232 5.768 26 H 0.248 0.752 27 H 0.089 0.911 28 H 0.003 0.997 29 H 0.088 0.912 30 H 0.091 0.909 31 H 0.072 0.928 32 H 0.079 0.921 33 H -0.019 1.019 34 H 0.068 0.932 35 H 0.182 0.818 36 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.442 -15.251 1.028 17.967 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.592 5.592 2 C -0.246 4.246 3 Si 0.798 3.202 4 H -0.202 1.202 5 H -0.231 1.231 6 H -0.198 1.198 7 C -0.380 4.380 8 H 0.100 0.900 9 N -0.324 5.324 10 C 0.009 3.991 11 C 0.008 3.992 12 H 0.129 0.871 13 C -0.142 4.142 14 C -0.142 4.142 15 C 0.006 3.994 16 H 0.101 0.899 17 C 0.060 3.940 18 N -0.337 5.337 19 C 0.391 3.609 20 O -0.464 6.464 21 C -0.440 4.440 22 C -0.045 4.045 23 N -0.217 5.217 24 C -0.268 4.268 25 S 0.488 5.512 26 H 0.057 0.943 27 H 0.107 0.893 28 H 0.021 0.979 29 H 0.106 0.894 30 H 0.110 0.890 31 H 0.091 0.909 32 H 0.098 0.902 33 H -0.001 1.001 34 H 0.087 0.913 35 H 0.199 0.801 36 H 0.261 0.739 Dipole moment (debyes) X Y Z Total from point charges 9.433 -15.098 0.879 17.825 hybrid contribution -1.439 1.172 0.057 1.857 sum 7.994 -13.926 0.936 16.085 Atomic orbital electron populations 1.70158 1.06956 1.25761 1.56282 1.25892 0.95953 1.01602 1.01138 0.85307 0.77298 0.79075 0.78504 1.20164 1.23087 1.19761 1.19532 0.91401 0.84125 1.42978 0.89962 1.44698 1.27109 1.03693 1.56904 1.21628 0.99001 0.86095 0.92390 1.23275 0.80440 0.98351 0.97131 0.87105 1.22266 0.97355 1.00170 0.94369 1.22256 0.92478 1.01708 0.97802 1.23062 0.99590 0.83584 0.93127 0.89942 1.21301 0.86779 0.95038 0.90872 1.49164 1.14121 1.20205 1.50170 1.16744 0.83789 0.81126 0.79202 1.90773 1.20159 1.80469 1.54978 1.25591 1.02742 1.01658 1.13993 1.22265 1.00972 0.86871 0.94367 1.66416 1.09925 1.32067 1.13272 1.29934 0.94962 1.01285 1.00621 1.83967 1.12192 1.13104 1.41983 0.94334 0.89263 0.97914 0.89380 0.89008 0.90909 0.90216 1.00095 0.91344 0.80124 0.73868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -55.10 10.96 21.65 0.24 -54.87 16 2 C -0.05 -2.71 5.10 84.86 0.43 -2.27 16 3 Si 0.97 42.74 29.56 68.60 2.03 44.77 16 4 H -0.28 -11.73 7.11 99.48 0.71 -11.02 16 5 H -0.30 -13.97 7.11 99.48 0.71 -13.26 16 6 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 7 C -0.25 -12.51 9.65 84.03 0.81 -11.70 16 8 H 0.08 3.82 7.85 -2.91 -0.02 3.80 16 9 N -0.60 -27.81 2.31 -689.74 -1.59 -29.40 16 10 C 0.14 4.99 6.01 86.55 0.52 5.51 16 11 C 0.11 3.36 3.54 45.33 0.16 3.52 16 12 H 0.11 2.61 3.93 -20.29 -0.08 2.53 16 13 C -0.10 -2.76 6.16 31.41 0.19 -2.56 16 14 C -0.10 -3.28 6.19 31.56 0.20 -3.09 16 15 C 0.11 4.32 4.06 45.47 0.18 4.50 16 16 H 0.08 3.32 7.96 -2.39 -0.02 3.30 16 17 C 0.19 9.05 4.69 86.15 0.40 9.46 16 18 N -0.61 -21.90 2.74 -761.87 -2.09 -23.99 16 19 C 0.60 22.81 7.88 86.45 0.68 23.49 16 20 O -0.58 -26.19 17.21 -4.30 -0.07 -26.27 16 21 C -0.32 -9.39 6.41 23.88 0.15 -9.24 16 22 C 0.11 3.17 11.10 84.23 0.93 4.11 16 23 N -0.50 -12.13 10.51 -202.56 -2.13 -14.26 16 24 C 0.02 0.42 12.22 130.60 1.60 2.02 16 25 S 0.23 4.58 18.93 -56.49 -1.07 3.51 16 26 H 0.25 14.23 8.31 -92.71 -0.77 13.46 16 27 H 0.09 2.89 7.97 -2.39 -0.02 2.87 16 28 H 0.00 0.12 8.14 -2.39 -0.02 0.10 16 29 H 0.09 2.40 7.83 -2.39 -0.02 2.38 16 30 H 0.09 1.86 8.14 -2.39 -0.02 1.84 16 31 H 0.07 2.57 7.86 -2.38 -0.02 2.55 16 32 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 33 H -0.02 -1.09 8.14 -2.38 -0.02 -1.11 16 34 H 0.07 3.68 6.37 -2.39 -0.02 3.67 16 35 H 0.18 4.98 8.06 -2.91 -0.02 4.96 16 36 H 0.25 1.71 8.06 -2.91 -0.02 1.69 16 Total: -1.00 -70.21 303.32 2.61 -67.59 By element: Atomic # 1 Polarization: 8.14 SS G_CDS: 1.03 Total: 9.17 kcal Atomic # 6 Polarization: 17.48 SS G_CDS: 6.27 Total: 23.74 kcal Atomic # 7 Polarization: -116.95 SS G_CDS: -5.57 Total: -122.52 kcal Atomic # 8 Polarization: -26.19 SS G_CDS: -0.07 Total: -26.27 kcal Atomic # 14 Polarization: 42.74 SS G_CDS: 2.03 Total: 44.77 kcal Atomic # 16 Polarization: 4.58 SS G_CDS: -1.07 Total: 3.51 kcal Total: -70.21 2.61 -67.59 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001017388122.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.869 kcal (2) G-P(sol) polarization free energy of solvation -70.207 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.614 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.593 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds