Wall clock time and date at job start Tue Mar 31 2020 06:34:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86792 * 119.99943 * 2 1 4 4 H 1.48503 * 109.47100 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47290 * 300.00120 * 3 2 1 6 6 H 1.48506 * 109.47257 * 60.00401 * 3 2 1 7 7 C 1.38816 * 120.00033 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00486 * 185.87772 * 7 2 1 9 9 N 1.36937 * 119.99558 * 5.87876 * 7 2 1 10 10 C 1.48364 * 120.35067 * 33.90593 * 9 7 2 11 11 C 1.53889 * 107.41527 * 133.12905 * 10 9 7 12 12 H 1.09001 * 112.09865 * 181.86587 * 11 10 9 13 13 C 1.54547 * 107.82988 * 305.83058 * 11 10 9 14 14 C 1.54279 * 104.94634 * 89.62100 * 13 11 10 15 15 C 1.54803 * 104.72898 * 0.08869 * 14 13 11 16 16 H 1.09003 * 112.68972 * 146.63849 * 15 14 13 17 17 C 1.47168 * 120.70499 * 213.72629 * 9 7 2 18 18 N 1.48310 * 107.74679 * 57.94098 * 11 10 9 19 19 C 1.34775 * 128.07721 * 106.47698 * 18 11 10 20 20 O 1.21633 * 119.99948 * 174.35265 * 19 18 11 21 21 C 1.47101 * 119.99939 * 354.35665 * 19 18 11 22 22 C 1.38388 * 127.99471 * 173.26519 * 21 19 18 23 23 C 1.37584 * 111.25959 * 179.88344 * 22 21 19 24 24 N 1.29555 * 117.94825 * 0.43738 * 23 22 21 25 25 S 1.56310 * 110.38036 * 359.75208 * 24 23 22 26 26 H 0.96996 * 120.00431 * 0.02562 * 1 2 3 27 27 H 1.08997 * 110.61561 * 13.36966 * 10 9 7 28 28 H 1.09002 * 109.49627 * 252.25373 * 10 9 7 29 29 H 1.08994 * 110.36595 * 208.51859 * 13 11 10 30 30 H 1.08997 * 110.36152 * 330.72309 * 13 11 10 31 31 H 1.08998 * 110.36125 * 118.90035 * 14 13 11 32 32 H 1.08996 * 110.36565 * 241.21615 * 14 13 11 33 33 H 1.08996 * 109.75031 * 107.63953 * 17 9 7 34 34 H 1.08996 * 109.79674 * 346.92164 * 17 9 7 35 35 H 1.07994 * 124.37245 * 0.03331 * 22 21 19 36 36 H 1.07998 * 121.02241 * 180.18620 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8914 2.3964 -1.2124 6 1 1.8915 2.3964 1.2126 7 6 2.0103 -1.2022 -0.0005 8 1 3.0860 -1.2048 0.0952 9 7 1.3309 -2.3849 -0.1225 10 6 0.1046 -2.4627 -0.9539 11 6 0.2278 -3.7144 -1.8405 12 1 -0.6245 -3.8280 -2.5105 13 6 1.5655 -3.6204 -2.6088 14 6 2.5999 -4.3060 -1.6921 15 6 1.7900 -4.7549 -0.4516 16 1 2.1627 -5.6837 -0.0197 17 6 1.8047 -3.5979 0.5630 18 7 0.3984 -4.8860 -0.9473 19 6 -0.5013 -5.8459 -0.6543 20 8 -0.1720 -6.8023 0.0211 21 6 -1.8814 -5.7368 -1.1516 22 6 -2.8956 -6.6741 -1.0624 23 6 -4.0544 -6.2120 -1.6426 24 7 -4.0384 -5.0302 -2.1732 25 16 -2.6268 -4.3791 -2.0096 26 1 -0.4850 0.8400 -0.0004 27 1 0.0086 -1.5758 -1.5802 28 1 -0.7682 -2.5538 -0.3073 29 1 1.4942 -4.1469 -3.5604 30 1 1.8362 -2.5773 -2.7725 31 1 3.0371 -5.1696 -2.1932 32 1 3.3781 -3.5996 -1.4036 33 1 1.1436 -3.8314 1.3975 34 1 2.8194 -3.4423 0.9294 35 1 -2.7917 -7.6423 -0.5954 36 1 -4.9486 -6.8174 -1.6588 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001017594863.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:34:24 Heat of formation + Delta-G solvation = 35.655565 kcal Electronic energy + Delta-G solvation = -22085.962906 eV Core-core repulsion = 18890.421041 eV Total energy + Delta-G solvation = -3195.541865 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 293.094 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.66898 -40.29903 -39.03332 -35.88144 -33.56073 -32.61414 -32.26410 -31.79935 -28.24166 -27.03891 -25.27366 -24.80169 -23.42549 -22.00190 -20.96393 -20.15752 -19.66964 -18.29116 -17.58515 -17.31272 -16.72435 -16.37774 -16.14527 -15.60563 -15.36711 -15.17654 -14.77742 -14.48275 -14.30092 -14.21916 -13.64949 -13.58176 -13.26433 -12.84880 -12.74931 -12.34960 -12.28424 -12.17259 -12.08993 -11.92341 -11.65344 -11.33611 -11.17298 -11.14641 -10.80116 -10.58053 -9.88167 -9.83080 -8.56011 -7.84098 -5.37761 -0.75076 0.24574 0.88209 1.22891 1.50183 1.53747 1.62093 1.77880 1.98982 2.52826 3.26761 3.34656 3.47013 3.82695 3.86313 4.00458 4.07657 4.13020 4.15288 4.35169 4.49568 4.57408 4.72376 4.78929 4.85522 4.89444 5.05676 5.08046 5.12712 5.27504 5.35305 5.52185 5.55844 5.59762 5.70470 6.40170 6.47314 6.91399 7.15146 7.79317 8.38364 9.22356 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.020356 B = 0.005904 C = 0.005056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1375.179573 B = 4741.038153 C = 5536.793403 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.041 4.041 3 Si 0.965 3.035 4 H -0.264 1.264 5 H -0.290 1.290 6 H -0.300 1.300 7 C -0.255 4.255 8 H 0.072 0.928 9 N -0.600 5.600 10 C 0.189 3.811 11 C 0.098 3.902 12 H 0.098 0.902 13 C -0.107 4.107 14 C -0.102 4.102 15 C 0.119 3.881 16 H 0.104 0.896 17 C 0.138 3.862 18 N -0.603 5.603 19 C 0.609 3.391 20 O -0.571 6.571 21 C -0.290 4.290 22 C -0.102 4.102 23 C 0.065 3.935 24 N -0.554 5.554 25 S 0.430 5.570 26 H 0.250 0.750 27 H 0.071 0.929 28 H -0.004 1.004 29 H 0.085 0.915 30 H 0.077 0.923 31 H 0.084 0.916 32 H 0.081 0.919 33 H -0.005 1.005 34 H 0.078 0.922 35 H 0.193 0.807 36 H 0.220 0.780 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.824 -10.909 -7.003 13.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.237 4.237 3 Si 0.794 3.206 4 H -0.189 1.189 5 H -0.217 1.217 6 H -0.227 1.227 7 C -0.385 4.385 8 H 0.090 0.910 9 N -0.325 5.325 10 C 0.062 3.938 11 C -0.008 4.008 12 H 0.115 0.885 13 C -0.145 4.145 14 C -0.140 4.140 15 C 0.016 3.984 16 H 0.122 0.878 17 C 0.011 3.989 18 N -0.334 5.334 19 C 0.397 3.603 20 O -0.452 6.452 21 C -0.423 4.423 22 C -0.139 4.139 23 C -0.127 4.127 24 N -0.382 5.382 25 S 0.586 5.414 26 H 0.059 0.941 27 H 0.089 0.911 28 H 0.014 0.986 29 H 0.103 0.897 30 H 0.095 0.905 31 H 0.103 0.897 32 H 0.099 0.901 33 H 0.013 0.987 34 H 0.096 0.904 35 H 0.210 0.790 36 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges -2.213 -9.402 -7.617 12.301 hybrid contribution -0.075 -0.445 1.301 1.377 sum -2.289 -9.847 -6.316 11.920 Atomic orbital electron populations 1.70093 1.06598 1.25790 1.55638 1.25934 0.96097 1.01269 1.00385 0.85240 0.78797 0.80130 0.76448 1.18855 1.21682 1.22747 1.19473 0.90639 0.83882 1.44504 0.91035 1.44442 1.28823 1.05855 1.53337 1.21220 0.87454 0.93638 0.91453 1.23470 0.99704 0.85718 0.91932 0.88529 1.22305 0.92324 1.02125 0.97746 1.22317 0.97380 1.00373 0.93934 1.23005 0.80269 0.98585 0.96560 0.87822 1.21556 0.98375 0.86704 0.92247 1.49119 1.14115 1.24238 1.45962 1.16555 0.82826 0.81227 0.79644 1.90742 1.79907 1.32699 1.41869 1.26799 0.99355 1.03780 1.12347 1.22441 0.90194 1.01757 0.99487 1.22763 1.01131 0.91664 0.97132 1.72249 1.24031 1.15796 1.26144 1.82397 0.96362 1.19002 1.43595 0.94071 0.91102 0.98621 0.89667 0.90479 0.89747 0.90076 0.98739 0.90364 0.78981 0.76384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -52.13 11.11 21.65 0.24 -51.89 16 2 C -0.04 -2.13 5.15 84.86 0.44 -1.69 16 3 Si 0.97 42.31 29.56 68.60 2.03 44.34 16 4 H -0.26 -10.92 7.11 99.48 0.71 -10.21 16 5 H -0.29 -12.68 7.11 99.48 0.71 -11.97 16 6 H -0.30 -13.58 7.11 99.48 0.71 -12.87 16 7 C -0.25 -12.75 9.59 84.03 0.81 -11.95 16 8 H 0.07 3.46 7.84 -2.91 -0.02 3.43 16 9 N -0.60 -27.67 2.28 -692.06 -1.58 -29.25 16 10 C 0.19 8.31 4.53 86.32 0.39 8.70 16 11 C 0.10 3.34 3.29 45.47 0.15 3.49 16 12 H 0.10 2.98 4.75 -15.18 -0.07 2.91 16 13 C -0.11 -3.16 6.17 31.55 0.19 -2.97 16 14 C -0.10 -2.91 6.20 31.64 0.20 -2.71 16 15 C 0.12 4.03 4.14 45.56 0.19 4.22 16 16 H 0.10 3.32 7.90 -2.39 -0.02 3.30 16 17 C 0.14 5.55 6.03 86.55 0.52 6.07 16 18 N -0.60 -21.31 2.76 -760.13 -2.09 -23.40 16 19 C 0.61 22.11 7.90 86.57 0.68 22.80 16 20 O -0.57 -23.17 17.27 -4.14 -0.07 -23.24 16 21 C -0.29 -8.96 6.63 24.63 0.16 -8.80 16 22 C -0.10 -2.48 10.41 22.15 0.23 -2.25 16 23 C 0.07 1.42 11.15 84.87 0.95 2.36 16 24 N -0.55 -15.26 11.29 -85.46 -0.96 -16.22 16 25 S 0.43 12.68 19.59 -56.49 -1.11 11.58 16 26 H 0.25 13.63 8.31 -92.71 -0.77 12.86 16 27 H 0.07 3.44 6.65 -2.39 -0.02 3.42 16 28 H 0.00 -0.21 8.14 -2.39 -0.02 -0.23 16 29 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 30 H 0.08 2.54 7.83 -2.39 -0.02 2.52 16 31 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 32 H 0.08 2.42 7.84 -2.39 -0.02 2.40 16 33 H -0.01 -0.24 8.14 -2.39 -0.02 -0.26 16 34 H 0.08 2.93 7.97 -2.39 -0.02 2.91 16 35 H 0.19 3.78 8.06 -2.91 -0.02 3.76 16 36 H 0.22 2.80 8.06 -2.91 -0.02 2.77 16 Total: -1.00 -64.52 304.12 2.40 -62.12 By element: Atomic # 1 Polarization: 7.65 SS G_CDS: 1.04 Total: 8.69 kcal Atomic # 6 Polarization: 12.36 SS G_CDS: 4.91 Total: 17.27 kcal Atomic # 7 Polarization: -116.36 SS G_CDS: -4.40 Total: -120.76 kcal Atomic # 8 Polarization: -23.17 SS G_CDS: -0.07 Total: -23.24 kcal Atomic # 14 Polarization: 42.31 SS G_CDS: 2.03 Total: 44.34 kcal Atomic # 16 Polarization: 12.68 SS G_CDS: -1.11 Total: 11.58 kcal Total: -64.52 2.40 -62.12 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001017594863.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.776 kcal (2) G-P(sol) polarization free energy of solvation -64.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.121 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.656 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds