Wall clock time and date at job start Tue Mar 31 2020 06:36:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86797 * 119.99725 * 2 1 4 4 H 1.48498 * 109.47051 * 90.00401 * 3 2 1 5 5 H 1.48505 * 109.47131 * 210.00404 * 3 2 1 6 6 H 1.48495 * 109.47519 * 330.00210 * 3 2 1 7 7 C 1.38810 * 119.99890 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99764 * 19.67971 * 7 2 1 9 9 N 1.36937 * 119.99452 * 199.68206 * 7 2 1 10 10 C 1.47158 * 120.71203 * 26.36456 * 9 7 2 11 11 C 1.53892 * 108.03065 * 132.75237 * 10 9 7 12 12 H 1.08995 * 112.09468 * 181.90982 * 11 10 9 13 13 C 1.54546 * 107.83302 * 305.87381 * 11 10 9 14 14 C 1.55862 * 104.09685 * 89.27324 * 13 11 10 15 15 C 1.54543 * 104.99653 * 359.97438 * 14 13 11 16 16 H 1.09006 * 112.18100 * 146.41932 * 15 14 13 17 17 C 1.47162 * 120.70709 * 206.08249 * 9 7 2 18 18 N 1.48306 * 104.36047 * 24.70913 * 15 14 13 19 19 C 1.34774 * 128.07662 * 139.08055 * 18 15 14 20 20 O 1.21571 * 120.00188 * 180.02562 * 19 18 15 21 21 C 1.47697 * 120.00282 * 0.02562 * 19 18 15 22 22 C 1.39484 * 122.10441 * 179.73791 * 21 19 18 23 23 C 1.35000 * 111.67896 * 179.78570 * 22 21 19 24 24 S 1.71758 * 105.45474 * 0.43049 * 23 22 21 25 25 N 1.30602 * 122.09831 * 0.02824 * 21 19 18 26 26 H 0.96999 * 119.99969 * 174.91236 * 1 2 3 27 27 H 1.08997 * 109.74979 * 252.38608 * 10 9 7 28 28 H 1.09002 * 109.75187 * 13.07599 * 10 9 7 29 29 H 1.08996 * 110.36373 * 207.91263 * 13 11 10 30 30 H 1.08996 * 110.36371 * 330.22772 * 13 11 10 31 31 H 1.08993 * 110.28323 * 241.10019 * 14 13 11 32 32 H 1.09000 * 110.38429 * 118.92586 * 14 13 11 33 33 H 1.09005 * 109.75049 * 346.87960 * 17 9 7 34 34 H 1.08998 * 109.74940 * 107.60848 * 17 9 7 35 35 H 1.08001 * 124.15841 * 359.97438 * 22 21 19 36 36 H 1.08008 * 127.27204 * 180.17354 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 1.4001 5 1 3.5477 1.4403 -0.7001 6 1 1.4476 2.6527 -0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 1.5175 -2.1100 -0.3159 9 7 3.3196 -1.2369 0.3989 10 6 3.8456 -0.2338 1.3384 11 6 4.6410 -0.9734 2.4287 12 1 5.0346 -0.2917 3.1827 13 6 3.7166 -2.0499 3.0410 14 6 3.9567 -3.3070 2.1514 15 6 4.9963 -2.8596 1.0991 16 1 5.6686 -3.6691 0.8147 17 6 4.2293 -2.2817 -0.0975 18 7 5.7149 -1.7355 1.7467 19 6 7.0358 -1.4689 1.7216 20 8 7.4714 -0.4984 2.3101 21 6 7.9543 -2.3558 0.9792 22 6 9.3275 -2.1184 0.9197 23 6 9.9651 -3.0594 0.1914 24 16 8.7367 -4.1335 -0.3448 25 7 7.5309 -3.4086 0.3325 26 1 -0.4850 -0.8367 -0.0745 27 1 4.5011 0.4581 0.8097 28 1 3.0201 0.3147 1.7920 29 1 4.0014 -2.2517 4.0735 30 1 2.6759 -1.7301 2.9893 31 1 3.0293 -3.6078 1.6642 32 1 4.3525 -4.1266 2.7512 33 1 3.6542 -3.0714 -0.5813 34 1 4.9334 -1.8497 -0.8086 35 1 9.8204 -1.2860 1.3999 36 1 11.0236 -3.1212 -0.0145 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001017645045.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:36:55 Heat of formation + Delta-G solvation = 60.747719 kcal Electronic energy + Delta-G solvation = -22213.012139 eV Core-core repulsion = 19018.558352 eV Total energy + Delta-G solvation = -3194.453787 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 293.094 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.69455 -39.25466 -37.46196 -34.27321 -32.09863 -31.38366 -30.91840 -30.75537 -26.88938 -25.76668 -24.19525 -22.76609 -21.66648 -20.52263 -20.14015 -18.71281 -18.56643 -17.51684 -16.64176 -15.79156 -15.39975 -15.16503 -14.47952 -14.32251 -13.90014 -13.69380 -13.45988 -13.27906 -12.99395 -12.87220 -12.42324 -12.20828 -11.67708 -11.54823 -11.37511 -11.35821 -10.87977 -10.48849 -10.25232 -10.11747 -10.08191 -10.03062 -9.63854 -9.58138 -9.14953 -8.98036 -8.75645 -8.21168 -7.05072 -6.26372 -3.32813 0.46670 1.30531 1.68176 1.72974 3.15782 3.38000 3.40252 3.55323 3.69273 4.49061 4.55964 4.70990 4.89159 5.11227 5.18087 5.26994 5.34786 5.40359 5.49177 5.59143 5.63895 5.74983 5.93028 6.05945 6.15134 6.20242 6.31786 6.34138 6.41619 6.51058 6.55550 6.67423 6.71935 6.90591 7.87245 7.93603 8.30728 8.39669 9.02730 9.56567 10.16797 11.13625 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.023922 B = 0.005383 C = 0.005251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1170.166263 B = 5200.311515 C = 5331.310643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.015 4.015 3 Si 1.063 2.937 4 H -0.293 1.293 5 H -0.287 1.287 6 H -0.299 1.299 7 C -0.339 4.339 8 H 0.069 0.931 9 N -0.600 5.600 10 C 0.116 3.884 11 C 0.114 3.886 12 H 0.094 0.906 13 C -0.112 4.112 14 C -0.113 4.113 15 C 0.102 3.898 16 H 0.123 0.877 17 C 0.144 3.856 18 N -0.587 5.587 19 C 0.602 3.398 20 O -0.544 6.544 21 C 0.063 3.937 22 C -0.134 4.134 23 C -0.283 4.283 24 S 0.445 5.555 25 N -0.507 5.507 26 H 0.263 0.737 27 H 0.030 0.970 28 H 0.085 0.915 29 H 0.056 0.944 30 H 0.090 0.910 31 H 0.083 0.917 32 H 0.053 0.947 33 H 0.067 0.933 34 H 0.020 0.980 35 H 0.171 0.829 36 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.180 -9.772 1.690 20.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.217 4.217 3 Si 0.895 3.105 4 H -0.221 1.221 5 H -0.214 1.214 6 H -0.227 1.227 7 C -0.468 4.468 8 H 0.087 0.913 9 N -0.324 5.324 10 C -0.010 4.010 11 C 0.010 3.990 12 H 0.112 0.888 13 C -0.151 4.151 14 C -0.152 4.152 15 C -0.003 4.003 16 H 0.140 0.860 17 C 0.017 3.983 18 N -0.318 5.318 19 C 0.385 3.615 20 O -0.422 6.422 21 C -0.112 4.112 22 C -0.167 4.167 23 C -0.432 4.432 24 S 0.601 5.399 25 N -0.341 5.341 26 H 0.073 0.927 27 H 0.047 0.953 28 H 0.103 0.897 29 H 0.075 0.925 30 H 0.109 0.891 31 H 0.101 0.899 32 H 0.072 0.928 33 H 0.085 0.915 34 H 0.038 0.962 35 H 0.188 0.812 36 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges 17.263 -9.227 1.084 19.604 hybrid contribution 1.011 -0.045 0.746 1.257 sum 18.274 -9.272 1.830 20.573 Atomic orbital electron populations 1.70908 1.05952 1.29951 1.49356 1.26092 0.96590 1.00980 0.97994 0.83823 0.74543 0.76002 0.76130 1.22125 1.21362 1.22730 1.20226 0.85680 0.95309 1.45549 0.91315 1.44366 1.08096 1.30904 1.49055 1.21975 0.96634 0.91960 0.90448 1.23006 0.86014 0.94457 0.95488 0.88759 1.22613 1.00748 0.94644 0.97081 1.22606 0.99230 0.96697 0.96625 1.23392 0.92974 0.89386 0.94573 0.86009 1.21322 0.92162 0.92274 0.92545 1.49008 1.04520 1.28355 1.49920 1.16783 0.80309 0.83917 0.80469 1.90773 1.76074 1.28982 1.46391 1.21227 0.93806 0.94744 1.01438 1.21394 0.91871 1.01927 1.01507 1.27142 1.07480 1.02558 1.05979 1.80597 0.88551 1.27488 1.43297 1.72612 1.30832 1.13660 1.16977 0.92702 0.95252 0.89734 0.92541 0.89125 0.89877 0.92814 0.91489 0.96241 0.81183 0.79791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -28.15 13.70 55.49 0.76 -27.39 16 2 C -0.02 -0.44 5.25 -17.43 -0.09 -0.53 16 3 Si 1.06 26.90 24.58 -169.99 -4.18 22.72 16 4 H -0.29 -6.98 6.53 56.52 0.37 -6.61 16 5 H -0.29 -7.19 6.59 56.52 0.37 -6.81 16 6 H -0.30 -7.69 7.11 56.52 0.40 -7.29 16 7 C -0.34 -9.23 9.95 -15.06 -0.15 -9.38 16 8 H 0.07 1.98 8.05 -52.49 -0.42 1.56 16 9 N -0.60 -14.20 2.08 -171.37 -0.36 -14.56 16 10 C 0.12 2.62 3.63 -3.22 -0.01 2.61 16 11 C 0.11 2.21 4.08 -65.66 -0.27 1.94 16 12 H 0.09 1.75 7.92 -51.93 -0.41 1.34 16 13 C -0.11 -1.97 6.31 -24.39 -0.15 -2.13 16 14 C -0.11 -1.89 6.22 -24.39 -0.15 -2.04 16 15 C 0.10 1.78 3.70 -65.91 -0.24 1.54 16 16 H 0.12 1.96 5.27 -51.93 -0.27 1.69 16 17 C 0.14 2.94 5.97 -3.46 -0.02 2.92 16 18 N -0.59 -10.97 2.75 -154.46 -0.42 -11.39 16 19 C 0.60 11.11 7.91 -12.40 -0.10 11.01 16 20 O -0.54 -11.16 16.96 5.30 0.09 -11.07 16 21 C 0.06 0.94 6.63 -84.06 -0.56 0.39 16 22 C -0.13 -1.61 9.98 -40.27 -0.40 -2.01 16 23 C -0.28 -2.46 11.41 29.58 0.34 -2.13 16 24 S 0.44 4.12 23.20 -107.50 -2.49 1.62 16 25 N -0.51 -6.95 7.91 24.84 0.20 -6.76 16 26 H 0.26 7.93 8.73 -40.82 -0.36 7.57 16 27 H 0.03 0.70 6.64 -51.93 -0.34 0.36 16 28 H 0.08 2.00 4.85 -51.93 -0.25 1.75 16 29 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 30 H 0.09 1.76 7.84 -51.93 -0.41 1.35 16 31 H 0.08 1.49 7.83 -51.93 -0.41 1.08 16 32 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.07 1.33 7.96 -51.93 -0.41 0.92 16 34 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 35 H 0.17 1.92 7.99 -52.49 -0.42 1.51 16 36 H 0.18 0.97 8.06 -52.48 -0.42 0.54 16 LS Contribution 298.01 15.07 4.49 4.49 Total: -1.00 -32.41 298.01 -7.98 -40.39 By element: Atomic # 1 Polarization: 4.00 SS G_CDS: -4.26 Total: -0.25 kcal Atomic # 6 Polarization: 4.01 SS G_CDS: -1.81 Total: 2.20 kcal Atomic # 7 Polarization: -60.28 SS G_CDS: 0.18 Total: -60.10 kcal Atomic # 8 Polarization: -11.16 SS G_CDS: 0.09 Total: -11.07 kcal Atomic # 14 Polarization: 26.90 SS G_CDS: -4.18 Total: 22.72 kcal Atomic # 16 Polarization: 4.12 SS G_CDS: -2.49 Total: 1.62 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -32.41 -7.98 -40.39 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001017645045.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.141 kcal (2) G-P(sol) polarization free energy of solvation -32.413 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.981 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.394 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds