Wall clock time and date at job start Tue Mar 31 2020 06:36:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86797 * 119.99725 * 2 1 4 4 H 1.48498 * 109.47051 * 90.00401 * 3 2 1 5 5 H 1.48505 * 109.47131 * 210.00404 * 3 2 1 6 6 H 1.48495 * 109.47519 * 330.00210 * 3 2 1 7 7 C 1.38810 * 119.99890 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99764 * 19.67971 * 7 2 1 9 9 N 1.36937 * 119.99452 * 199.68206 * 7 2 1 10 10 C 1.47158 * 120.71203 * 26.36456 * 9 7 2 11 11 C 1.53892 * 108.03065 * 132.75237 * 10 9 7 12 12 H 1.08995 * 112.09468 * 181.90982 * 11 10 9 13 13 C 1.54546 * 107.83302 * 305.87381 * 11 10 9 14 14 C 1.55862 * 104.09685 * 89.27324 * 13 11 10 15 15 C 1.54543 * 104.99653 * 359.97438 * 14 13 11 16 16 H 1.09006 * 112.18100 * 146.41932 * 15 14 13 17 17 C 1.47162 * 120.70709 * 206.08249 * 9 7 2 18 18 N 1.48306 * 104.36047 * 24.70913 * 15 14 13 19 19 C 1.34774 * 128.07662 * 139.08055 * 18 15 14 20 20 O 1.21571 * 120.00188 * 180.02562 * 19 18 15 21 21 C 1.47697 * 120.00282 * 0.02562 * 19 18 15 22 22 C 1.39484 * 122.10441 * 179.73791 * 21 19 18 23 23 C 1.35000 * 111.67896 * 179.78570 * 22 21 19 24 24 S 1.71758 * 105.45474 * 0.43049 * 23 22 21 25 25 N 1.30602 * 122.09831 * 0.02824 * 21 19 18 26 26 H 0.96999 * 119.99969 * 174.91236 * 1 2 3 27 27 H 1.08997 * 109.74979 * 252.38608 * 10 9 7 28 28 H 1.09002 * 109.75187 * 13.07599 * 10 9 7 29 29 H 1.08996 * 110.36373 * 207.91263 * 13 11 10 30 30 H 1.08996 * 110.36371 * 330.22772 * 13 11 10 31 31 H 1.08993 * 110.28323 * 241.10019 * 14 13 11 32 32 H 1.09000 * 110.38429 * 118.92586 * 14 13 11 33 33 H 1.09005 * 109.75049 * 346.87960 * 17 9 7 34 34 H 1.08998 * 109.74940 * 107.60848 * 17 9 7 35 35 H 1.08001 * 124.15841 * 359.97438 * 22 21 19 36 36 H 1.08008 * 127.27204 * 180.17354 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 1.4001 5 1 3.5477 1.4403 -0.7001 6 1 1.4476 2.6527 -0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 1.5175 -2.1100 -0.3159 9 7 3.3196 -1.2369 0.3989 10 6 3.8456 -0.2338 1.3384 11 6 4.6410 -0.9734 2.4287 12 1 5.0346 -0.2917 3.1827 13 6 3.7166 -2.0499 3.0410 14 6 3.9567 -3.3070 2.1514 15 6 4.9963 -2.8596 1.0991 16 1 5.6686 -3.6691 0.8147 17 6 4.2293 -2.2817 -0.0975 18 7 5.7149 -1.7355 1.7467 19 6 7.0358 -1.4689 1.7216 20 8 7.4714 -0.4984 2.3101 21 6 7.9543 -2.3558 0.9792 22 6 9.3275 -2.1184 0.9197 23 6 9.9651 -3.0594 0.1914 24 16 8.7367 -4.1335 -0.3448 25 7 7.5309 -3.4086 0.3325 26 1 -0.4850 -0.8367 -0.0745 27 1 4.5011 0.4581 0.8097 28 1 3.0201 0.3147 1.7920 29 1 4.0014 -2.2517 4.0735 30 1 2.6759 -1.7301 2.9893 31 1 3.0293 -3.6078 1.6642 32 1 4.3525 -4.1266 2.7512 33 1 3.6542 -3.0714 -0.5813 34 1 4.9334 -1.8497 -0.8086 35 1 9.8204 -1.2860 1.3999 36 1 11.0236 -3.1212 -0.0145 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001017645045.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:36:55 Heat of formation + Delta-G solvation = 38.940273 kcal Electronic energy + Delta-G solvation = -22213.957781 eV Core-core repulsion = 19018.558352 eV Total energy + Delta-G solvation = -3195.399429 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 293.094 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.03087 -40.47408 -38.83328 -36.16139 -33.53895 -33.08961 -32.44801 -32.03725 -28.32856 -27.27847 -25.82457 -24.31810 -23.15192 -21.92738 -21.42357 -20.21799 -19.65159 -19.10803 -18.12044 -17.26636 -16.87198 -16.43906 -16.27170 -15.78400 -15.30828 -15.15871 -15.06138 -14.44595 -14.35103 -14.24120 -14.09301 -13.85060 -13.34587 -13.26688 -12.91211 -12.36413 -12.17311 -12.10888 -11.96997 -11.87376 -11.59658 -11.34819 -11.21121 -10.94021 -10.85124 -10.78185 -10.00936 -9.70260 -9.08789 -8.48296 -5.53121 -0.43660 0.54989 0.72939 0.80070 1.35542 1.48115 1.64531 1.82810 2.11516 2.45283 3.03509 3.26301 3.35218 3.69071 3.79877 3.82774 3.97026 4.04666 4.19690 4.39659 4.42470 4.48010 4.55615 4.62837 4.73349 4.78041 4.84736 4.87088 4.93954 4.99104 5.08491 5.15305 5.34244 5.49712 5.75017 6.22382 6.47591 6.85621 6.92322 7.48917 8.03856 8.88027 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.023922 B = 0.005383 C = 0.005251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1170.166263 B = 5200.311515 C = 5331.310643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.956 5.956 2 C -0.063 4.063 3 Si 1.097 2.903 4 H -0.273 1.273 5 H -0.286 1.286 6 H -0.304 1.304 7 C -0.316 4.316 8 H 0.047 0.953 9 N -0.609 5.609 10 C 0.115 3.885 11 C 0.116 3.884 12 H 0.101 0.899 13 C -0.107 4.107 14 C -0.109 4.109 15 C 0.116 3.884 16 H 0.145 0.855 17 C 0.142 3.858 18 N -0.593 5.593 19 C 0.596 3.404 20 O -0.575 6.575 21 C 0.032 3.968 22 C -0.155 4.155 23 C -0.259 4.259 24 S 0.530 5.470 25 N -0.547 5.547 26 H 0.252 0.748 27 H 0.016 0.984 28 H 0.070 0.930 29 H 0.084 0.916 30 H 0.066 0.934 31 H 0.067 0.933 32 H 0.084 0.916 33 H 0.069 0.931 34 H 0.011 0.989 35 H 0.170 0.830 36 H 0.226 0.774 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.492 -11.601 1.729 24.484 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.600 5.600 2 C -0.258 4.258 3 Si 0.925 3.075 4 H -0.199 1.199 5 H -0.212 1.212 6 H -0.233 1.233 7 C -0.446 4.446 8 H 0.065 0.935 9 N -0.334 5.334 10 C -0.011 4.011 11 C 0.011 3.989 12 H 0.119 0.881 13 C -0.146 4.146 14 C -0.147 4.147 15 C 0.011 3.989 16 H 0.162 0.838 17 C 0.016 3.984 18 N -0.324 5.324 19 C 0.382 3.618 20 O -0.455 6.455 21 C -0.140 4.140 22 C -0.187 4.187 23 C -0.408 4.408 24 S 0.686 5.314 25 N -0.384 5.384 26 H 0.061 0.939 27 H 0.034 0.966 28 H 0.088 0.912 29 H 0.103 0.897 30 H 0.085 0.915 31 H 0.086 0.914 32 H 0.103 0.897 33 H 0.087 0.913 34 H 0.029 0.971 35 H 0.187 0.813 36 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges 20.618 -11.072 1.142 23.430 hybrid contribution 0.144 0.336 0.601 0.704 sum 20.762 -10.735 1.743 23.438 Atomic orbital electron populations 1.70989 1.06971 1.29328 1.52670 1.26946 0.96575 1.03666 0.98653 0.83331 0.73448 0.73473 0.77199 1.19936 1.21207 1.23291 1.20127 0.87097 0.94156 1.43227 0.93504 1.44413 1.07450 1.31862 1.49704 1.21907 0.96273 0.91845 0.91058 1.22838 0.86505 0.95074 0.94460 0.88111 1.22554 0.98872 0.94338 0.98791 1.22593 0.98420 0.97198 0.96489 1.23289 0.93013 0.89388 0.93206 0.83823 1.21440 0.91653 0.91335 0.93935 1.49068 1.04748 1.28432 1.50184 1.17389 0.80395 0.83949 0.80027 1.90736 1.76613 1.30423 1.47700 1.20899 0.94137 0.95557 1.03361 1.21414 0.90929 1.03249 1.03089 1.27599 1.09321 1.00562 1.03315 1.80290 0.86554 1.24726 1.39834 1.72130 1.34463 1.13926 1.17854 0.93867 0.96615 0.91166 0.89740 0.91520 0.91437 0.89727 0.91264 0.97115 0.81291 0.75754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -60.22 13.70 21.65 0.30 -59.92 16 2 C -0.06 -3.68 5.25 84.86 0.45 -3.24 16 3 Si 1.10 55.55 24.58 68.60 1.69 57.24 16 4 H -0.27 -12.78 6.53 99.48 0.65 -12.13 16 5 H -0.29 -14.23 6.59 99.48 0.66 -13.58 16 6 H -0.30 -15.59 7.11 99.48 0.71 -14.88 16 7 C -0.32 -17.64 9.95 84.03 0.84 -16.81 16 8 H 0.05 2.79 8.05 -2.91 -0.02 2.77 16 9 N -0.61 -29.15 2.08 -696.09 -1.45 -30.60 16 10 C 0.12 5.23 3.63 86.56 0.31 5.55 16 11 C 0.12 4.41 4.08 45.47 0.19 4.60 16 12 H 0.10 3.70 7.92 -2.39 -0.02 3.68 16 13 C -0.11 -3.64 6.31 32.11 0.20 -3.44 16 14 C -0.11 -3.45 6.22 32.11 0.20 -3.25 16 15 C 0.12 3.88 3.70 45.31 0.17 4.05 16 16 H 0.14 4.28 5.27 -2.38 -0.01 4.27 16 17 C 0.14 5.77 5.97 86.40 0.52 6.29 16 18 N -0.59 -21.60 2.75 -760.85 -2.09 -23.69 16 19 C 0.60 21.56 7.91 86.74 0.69 22.25 16 20 O -0.57 -23.50 16.96 -3.94 -0.07 -23.56 16 21 C 0.03 0.92 6.63 42.13 0.28 1.20 16 22 C -0.15 -3.33 9.98 21.83 0.22 -3.11 16 23 C -0.26 -3.33 11.41 67.07 0.76 -2.56 16 24 S 0.53 7.52 23.20 -56.49 -1.31 6.21 16 25 N -0.55 -13.48 7.91 -75.31 -0.60 -14.08 16 26 H 0.25 15.83 8.73 -92.71 -0.81 15.02 16 27 H 0.02 0.77 6.64 -2.39 -0.02 0.75 16 28 H 0.07 3.37 4.85 -2.39 -0.01 3.36 16 29 H 0.08 2.40 8.14 -2.39 -0.02 2.38 16 30 H 0.07 2.59 7.84 -2.39 -0.02 2.57 16 31 H 0.07 2.36 7.83 -2.39 -0.02 2.35 16 32 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 33 H 0.07 2.74 7.96 -2.38 -0.02 2.72 16 34 H 0.01 0.46 8.14 -2.39 -0.02 0.44 16 35 H 0.17 3.57 7.99 -2.91 -0.02 3.54 16 36 H 0.23 0.96 8.06 -2.91 -0.02 0.94 16 Total: -1.00 -72.75 298.01 2.24 -70.51 By element: Atomic # 1 Polarization: 5.42 SS G_CDS: 0.96 Total: 6.38 kcal Atomic # 6 Polarization: 6.71 SS G_CDS: 4.81 Total: 11.52 kcal Atomic # 7 Polarization: -124.45 SS G_CDS: -3.84 Total: -128.29 kcal Atomic # 8 Polarization: -23.50 SS G_CDS: -0.07 Total: -23.56 kcal Atomic # 14 Polarization: 55.55 SS G_CDS: 1.69 Total: 57.24 kcal Atomic # 16 Polarization: 7.52 SS G_CDS: -1.31 Total: 6.21 kcal Total: -72.75 2.24 -70.51 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001017645045.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.446 kcal (2) G-P(sol) polarization free energy of solvation -72.749 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.697 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.243 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.506 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.940 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds