Wall clock time and date at job start Tue Mar 31 2020 06:37:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86794 * 119.99788 * 2 1 4 4 H 1.48493 * 109.47463 * 355.36427 * 3 2 1 5 5 H 1.48510 * 109.46810 * 115.36392 * 3 2 1 6 6 H 1.48498 * 109.47153 * 235.35658 * 3 2 1 7 7 C 1.38812 * 119.99992 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00077 * 352.25902 * 7 2 1 9 9 N 1.36935 * 119.99962 * 172.26235 * 7 2 1 10 10 C 1.47070 * 136.05691 * 6.38666 * 9 7 2 11 11 C 1.53762 * 87.88570 * 152.96947 * 10 9 7 12 12 N 1.46500 * 114.39503 * 272.68209 * 11 10 9 13 13 C 1.34775 * 119.99438 * 248.58795 * 12 11 10 14 14 O 1.21632 * 120.00496 * 359.97438 * 13 12 11 15 15 C 1.47271 * 119.99875 * 180.02562 * 13 12 11 16 16 N 1.33559 * 123.14161 * 0.02562 * 15 13 12 17 17 C 1.28642 * 115.76804 * 180.02562 * 16 15 13 18 18 S 1.70765 * 110.56070 * 359.97438 * 17 16 15 19 19 C 1.35206 * 123.14361 * 179.72733 * 15 13 12 20 20 C 1.50706 * 125.58514 * 0.02562 * 19 15 13 21 21 C 1.52998 * 117.49707 * 188.74708 * 20 19 15 22 22 C 1.52998 * 117.49802 * 120.08235 * 20 19 15 23 23 C 1.47065 * 136.05778 * 186.76980 * 9 7 2 24 24 H 0.97005 * 119.99783 * 184.87568 * 1 2 3 25 25 H 1.08996 * 113.47141 * 267.70033 * 10 9 7 26 26 H 1.09002 * 113.46180 * 38.14777 * 10 9 7 27 27 H 1.09000 * 114.26213 * 139.79217 * 11 10 9 28 28 H 0.96999 * 120.00177 * 68.58488 * 12 11 10 29 29 H 1.08002 * 124.71844 * 180.02562 * 17 16 15 30 30 H 1.08998 * 115.54631 * 334.41171 * 20 19 15 31 31 H 1.08995 * 117.49962 * 359.97438 * 21 20 19 32 32 H 1.09000 * 117.49605 * 145.02286 * 21 20 19 33 33 H 1.08999 * 117.49845 * 214.97355 * 22 20 19 34 34 H 1.09000 * 117.50270 * 0.02562 * 22 20 19 35 35 H 1.09003 * 113.46756 * 321.86183 * 23 9 7 36 36 H 1.09002 * 113.46950 * 92.29471 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 1.2891 2.7441 -0.1131 5 1 3.0170 1.7465 1.2652 6 1 3.1868 1.6485 -1.1518 7 6 2.0102 -1.2021 -0.0005 8 1 1.4776 -2.1332 0.1250 9 7 3.3702 -1.2075 -0.1602 10 6 4.4312 -0.1920 -0.2390 11 6 5.4059 -1.2505 0.3030 12 7 5.4675 -1.3241 1.7649 13 6 6.5829 -0.9333 2.4128 14 8 7.5384 -0.5200 1.7838 15 6 6.6451 -1.0078 3.8823 16 7 5.6348 -1.4524 4.6343 17 6 5.8423 -1.4563 5.9039 18 16 7.4067 -0.8702 6.2577 19 6 7.7324 -0.6381 4.5958 20 6 9.0192 -0.1049 4.0204 21 6 10.2032 0.0642 4.9746 22 6 9.4591 1.2956 4.4516 23 6 4.4119 -2.2308 -0.3351 24 1 -0.4850 -0.8371 0.0714 25 1 4.6555 0.1232 -1.2580 26 1 4.2793 0.6479 0.4390 27 1 6.3880 -1.2388 -0.1697 28 1 4.7057 -1.6541 2.2664 29 1 5.1269 -1.7853 6.6430 30 1 9.2374 -0.4080 2.9964 31 1 10.0513 -0.2098 6.0185 32 1 11.2003 -0.1271 4.5781 33 1 9.9672 1.9137 3.7115 34 1 8.8181 1.8312 5.1519 35 1 4.2436 -3.1278 0.2608 36 1 4.6311 -2.4530 -1.3795 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001030947874.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:19 Heat of formation + Delta-G solvation = 104.357369 kcal Electronic energy + Delta-G solvation = -20930.433333 eV Core-core repulsion = 17737.870602 eV Total energy + Delta-G solvation = -3192.562731 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 293.094 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.62879 -39.12855 -37.70885 -37.36804 -33.41154 -32.09193 -30.61681 -28.01744 -26.15743 -25.36132 -23.38185 -22.68605 -22.29593 -21.81468 -19.74318 -19.47282 -18.31300 -17.45117 -16.87889 -16.09772 -15.75379 -15.43417 -14.87428 -14.71423 -14.35781 -14.05338 -13.83484 -13.58146 -13.30174 -12.98697 -12.31561 -12.17126 -12.00689 -11.85349 -11.34939 -11.27391 -11.02129 -10.85804 -10.53374 -10.29664 -9.97974 -9.70921 -9.50839 -9.47825 -9.18779 -9.02071 -8.84881 -8.46025 -7.14903 -6.30958 -3.21847 0.34199 1.00639 1.42605 1.95399 3.37758 3.40613 3.45980 3.47637 3.67165 3.69269 4.02877 4.27961 4.56398 4.60851 4.72724 4.74374 4.92874 5.03803 5.15396 5.31365 5.35495 5.44006 5.58981 5.72599 5.80066 5.87744 5.95923 6.02414 6.21821 6.27591 6.34115 6.44916 6.97147 7.10271 7.28104 7.88815 8.24647 8.42165 8.98631 9.51249 10.36687 11.21896 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.020923 B = 0.004396 C = 0.004207 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1337.899919 B = 6367.809875 C = 6654.644878 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.022 4.022 3 Si 1.070 2.930 4 H -0.296 1.296 5 H -0.295 1.295 6 H -0.287 1.287 7 C -0.305 4.305 8 H 0.083 0.917 9 N -0.627 5.627 10 C 0.085 3.915 11 C 0.097 3.903 12 N -0.676 5.676 13 C 0.595 3.405 14 O -0.540 6.540 15 C 0.004 3.996 16 N -0.431 5.431 17 C -0.003 4.003 18 S 0.190 5.810 19 C -0.150 4.150 20 C -0.085 4.085 21 C -0.178 4.178 22 C -0.160 4.160 23 C 0.114 3.886 24 H 0.260 0.740 25 H 0.056 0.944 26 H 0.054 0.946 27 H 0.105 0.895 28 H 0.416 0.584 29 H 0.206 0.794 30 H 0.150 0.850 31 H 0.094 0.906 32 H 0.105 0.895 33 H 0.105 0.895 34 H 0.095 0.905 35 H 0.050 0.950 36 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.257 -1.901 13.925 24.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.221 4.221 3 Si 0.903 3.097 4 H -0.223 1.223 5 H -0.223 1.223 6 H -0.214 1.214 7 C -0.431 4.431 8 H 0.101 0.899 9 N -0.357 5.357 10 C -0.041 4.041 11 C -0.010 4.010 12 N -0.325 5.325 13 C 0.379 3.621 14 O -0.419 6.419 15 C -0.130 4.130 16 N -0.144 5.144 17 C -0.303 4.303 18 S 0.446 5.554 19 C -0.274 4.274 20 C -0.105 4.105 21 C -0.216 4.216 22 C -0.198 4.198 23 C -0.013 4.013 24 H 0.071 0.929 25 H 0.074 0.926 26 H 0.072 0.928 27 H 0.123 0.877 28 H 0.252 0.748 29 H 0.222 0.778 30 H 0.167 0.833 31 H 0.113 0.887 32 H 0.124 0.876 33 H 0.124 0.876 34 H 0.114 0.886 35 H 0.068 0.932 36 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 20.380 -0.051 14.143 24.807 hybrid contribution -0.629 -1.861 -0.613 2.058 sum 19.751 -1.912 13.530 24.017 Atomic orbital electron populations 1.70925 1.05344 1.29417 1.51981 1.25680 0.96398 1.00899 0.99136 0.83689 0.73684 0.76026 0.76261 1.22313 1.22337 1.21362 1.20113 0.78718 0.95777 1.48518 0.89918 1.46084 1.02395 1.01637 1.85540 1.23270 0.87852 0.94342 0.98668 1.22544 0.98915 0.99563 0.79945 1.45350 1.16538 1.63449 1.07120 1.16970 0.83096 0.77742 0.84334 1.90707 1.36502 1.47697 1.66964 1.20374 0.89955 1.06539 0.96156 1.66985 1.28663 1.14661 1.04141 1.28356 1.00314 1.05473 0.96125 1.82693 1.11987 1.56985 1.03689 1.24793 1.00147 1.04994 0.97447 1.20713 0.88718 1.00172 1.00945 1.23169 0.96758 1.02836 0.98839 1.23089 1.02955 0.90293 1.03437 1.22707 0.87096 0.93626 0.97842 0.92935 0.92604 0.92829 0.87673 0.74753 0.77790 0.83268 0.88742 0.87644 0.87618 0.88626 0.93202 0.92925 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.91 13.70 55.49 0.76 -29.15 16 2 C -0.02 -0.67 5.50 -17.43 -0.10 -0.77 16 3 Si 1.07 27.88 25.13 -169.99 -4.27 23.61 16 4 H -0.30 -7.79 7.11 56.52 0.40 -7.39 16 5 H -0.29 -7.49 6.65 56.52 0.38 -7.11 16 6 H -0.29 -6.97 6.13 56.52 0.35 -6.63 16 7 C -0.31 -8.87 11.08 -15.06 -0.17 -9.03 16 8 H 0.08 2.52 8.05 -52.49 -0.42 2.09 16 9 N -0.63 -15.53 3.70 -184.60 -0.68 -16.21 16 10 C 0.09 1.88 5.54 -8.36 -0.05 1.84 16 11 C 0.10 1.81 4.61 -67.67 -0.31 1.50 16 12 N -0.68 -12.51 5.39 -54.60 -0.29 -12.81 16 13 C 0.59 10.57 7.80 -12.59 -0.10 10.47 16 14 O -0.54 -10.07 13.75 5.25 0.07 -10.00 16 15 C 0.00 0.06 6.70 -84.52 -0.57 -0.50 16 16 N -0.43 -6.35 10.12 -12.36 -0.13 -6.48 16 17 C 0.00 -0.03 12.17 51.43 0.63 0.60 16 18 S 0.19 1.70 21.77 -107.50 -2.34 -0.64 16 19 C -0.15 -1.90 6.04 -35.39 -0.21 -2.12 16 20 C -0.09 -0.98 5.40 -91.77 -0.50 -1.48 16 21 C -0.18 -1.46 10.04 -26.69 -0.27 -1.73 16 22 C -0.16 -1.51 10.24 -26.69 -0.27 -1.78 16 23 C 0.11 2.25 8.44 -8.51 -0.07 2.18 16 24 H 0.26 8.21 8.73 -40.82 -0.36 7.85 16 25 H 0.06 1.19 7.73 -51.93 -0.40 0.78 16 26 H 0.05 1.27 4.65 -51.93 -0.24 1.03 16 27 H 0.11 1.80 7.45 -51.93 -0.39 1.41 16 28 H 0.42 7.96 8.28 -40.82 -0.34 7.62 16 29 H 0.21 1.41 8.06 -52.49 -0.42 0.99 16 30 H 0.15 2.01 6.17 -51.93 -0.32 1.69 16 31 H 0.09 0.67 7.28 -51.93 -0.38 0.30 16 32 H 0.11 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.11 0.91 8.14 -51.93 -0.42 0.49 16 34 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 35 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 36 H 0.05 0.96 8.14 -51.93 -0.42 0.53 16 LS Contribution 314.11 15.07 4.73 4.73 Total: -1.00 -34.46 314.11 -8.39 -42.85 By element: Atomic # 1 Polarization: 9.18 SS G_CDS: -4.26 Total: 4.93 kcal Atomic # 6 Polarization: 1.16 SS G_CDS: -1.98 Total: -0.82 kcal Atomic # 7 Polarization: -64.31 SS G_CDS: -0.34 Total: -64.65 kcal Atomic # 8 Polarization: -10.07 SS G_CDS: 0.07 Total: -10.00 kcal Atomic # 14 Polarization: 27.88 SS G_CDS: -4.27 Total: 23.61 kcal Atomic # 16 Polarization: 1.70 SS G_CDS: -2.34 Total: -0.64 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -34.46 -8.39 -42.85 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001030947874.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.204 kcal (2) G-P(sol) polarization free energy of solvation -34.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 112.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.846 kcal (6) G-S(sol) free energy of system = (1) + (5) 104.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds