Wall clock time and date at job start Tue Mar 31 2020 06:37:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86794 * 119.99788 * 2 1 4 4 H 1.48493 * 109.47463 * 355.36427 * 3 2 1 5 5 H 1.48510 * 109.46810 * 115.36392 * 3 2 1 6 6 H 1.48498 * 109.47153 * 235.35658 * 3 2 1 7 7 C 1.38812 * 119.99992 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00077 * 352.25902 * 7 2 1 9 9 N 1.36935 * 119.99962 * 172.26235 * 7 2 1 10 10 C 1.47070 * 136.05691 * 6.38666 * 9 7 2 11 11 C 1.53762 * 87.88570 * 152.96947 * 10 9 7 12 12 N 1.46500 * 114.39503 * 272.68209 * 11 10 9 13 13 C 1.34775 * 119.99438 * 248.58795 * 12 11 10 14 14 O 1.21632 * 120.00496 * 359.97438 * 13 12 11 15 15 C 1.47271 * 119.99875 * 180.02562 * 13 12 11 16 16 N 1.33559 * 123.14161 * 0.02562 * 15 13 12 17 17 C 1.28642 * 115.76804 * 180.02562 * 16 15 13 18 18 S 1.70765 * 110.56070 * 359.97438 * 17 16 15 19 19 C 1.35206 * 123.14361 * 179.72733 * 15 13 12 20 20 C 1.50706 * 125.58514 * 0.02562 * 19 15 13 21 21 C 1.52998 * 117.49707 * 188.74708 * 20 19 15 22 22 C 1.52998 * 117.49802 * 120.08235 * 20 19 15 23 23 C 1.47065 * 136.05778 * 186.76980 * 9 7 2 24 24 H 0.97005 * 119.99783 * 184.87568 * 1 2 3 25 25 H 1.08996 * 113.47141 * 267.70033 * 10 9 7 26 26 H 1.09002 * 113.46180 * 38.14777 * 10 9 7 27 27 H 1.09000 * 114.26213 * 139.79217 * 11 10 9 28 28 H 0.96999 * 120.00177 * 68.58488 * 12 11 10 29 29 H 1.08002 * 124.71844 * 180.02562 * 17 16 15 30 30 H 1.08998 * 115.54631 * 334.41171 * 20 19 15 31 31 H 1.08995 * 117.49962 * 359.97438 * 21 20 19 32 32 H 1.09000 * 117.49605 * 145.02286 * 21 20 19 33 33 H 1.08999 * 117.49845 * 214.97355 * 22 20 19 34 34 H 1.09000 * 117.50270 * 0.02562 * 22 20 19 35 35 H 1.09003 * 113.46756 * 321.86183 * 23 9 7 36 36 H 1.09002 * 113.46950 * 92.29471 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 1.2891 2.7441 -0.1131 5 1 3.0170 1.7465 1.2652 6 1 3.1868 1.6485 -1.1518 7 6 2.0102 -1.2021 -0.0005 8 1 1.4776 -2.1332 0.1250 9 7 3.3702 -1.2075 -0.1602 10 6 4.4312 -0.1920 -0.2390 11 6 5.4059 -1.2505 0.3030 12 7 5.4675 -1.3241 1.7649 13 6 6.5829 -0.9333 2.4128 14 8 7.5384 -0.5200 1.7838 15 6 6.6451 -1.0078 3.8823 16 7 5.6348 -1.4524 4.6343 17 6 5.8423 -1.4563 5.9039 18 16 7.4067 -0.8702 6.2577 19 6 7.7324 -0.6381 4.5958 20 6 9.0192 -0.1049 4.0204 21 6 10.2032 0.0642 4.9746 22 6 9.4591 1.2956 4.4516 23 6 4.4119 -2.2308 -0.3351 24 1 -0.4850 -0.8371 0.0714 25 1 4.6555 0.1232 -1.2580 26 1 4.2793 0.6479 0.4390 27 1 6.3880 -1.2388 -0.1697 28 1 4.7057 -1.6541 2.2664 29 1 5.1269 -1.7853 6.6430 30 1 9.2374 -0.4080 2.9964 31 1 10.0513 -0.2098 6.0185 32 1 11.2003 -0.1271 4.5781 33 1 9.9672 1.9137 3.7115 34 1 8.8181 1.8312 5.1519 35 1 4.2436 -3.1278 0.2608 36 1 4.6311 -2.4530 -1.3795 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001030947874.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:18 Heat of formation + Delta-G solvation = 78.534638 kcal Electronic energy + Delta-G solvation = -20931.553091 eV Core-core repulsion = 17737.870602 eV Total energy + Delta-G solvation = -3193.682489 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 293.094 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.77202 -40.54527 -39.09006 -38.18081 -35.13924 -34.07133 -31.56634 -29.90275 -27.24532 -27.06758 -24.82870 -23.62523 -23.28337 -22.97566 -21.21223 -20.94150 -19.58357 -19.21206 -17.97646 -17.39643 -17.11763 -16.70437 -16.23949 -15.92833 -15.69475 -15.36716 -15.11753 -15.09761 -14.92635 -14.58746 -13.60874 -13.34272 -13.13251 -13.05652 -12.82057 -12.50932 -12.50292 -12.10520 -12.06729 -11.70752 -11.40736 -11.28728 -11.06872 -10.97499 -10.73760 -10.27866 -10.13295 -9.78910 -9.23834 -8.66916 -5.48614 -0.55473 0.19909 0.57108 0.89704 1.34469 1.41731 1.61261 2.11732 2.22286 2.47514 2.90362 2.91058 3.10991 3.20663 3.43729 3.55615 3.76273 4.01745 4.02538 4.16995 4.24231 4.31065 4.53379 4.58839 4.62757 4.69310 4.70590 4.79300 4.89364 4.95633 5.14961 5.16262 5.19347 5.51410 5.92602 6.27892 6.57733 6.67821 7.06502 7.29869 8.23609 8.88918 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.020923 B = 0.004396 C = 0.004207 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1337.899919 B = 6367.809875 C = 6654.644878 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.971 5.971 2 C -0.080 4.080 3 Si 1.108 2.892 4 H -0.303 1.303 5 H -0.290 1.290 6 H -0.259 1.259 7 C -0.286 4.286 8 H 0.056 0.944 9 N -0.656 5.656 10 C 0.077 3.923 11 C 0.118 3.882 12 N -0.685 5.685 13 C 0.592 3.408 14 O -0.556 6.556 15 C -0.035 4.035 16 N -0.473 5.473 17 C -0.012 4.012 18 S 0.289 5.711 19 C -0.160 4.160 20 C -0.117 4.117 21 C -0.151 4.151 22 C -0.159 4.159 23 C 0.118 3.882 24 H 0.248 0.752 25 H 0.073 0.927 26 H 0.038 0.962 27 H 0.129 0.871 28 H 0.410 0.590 29 H 0.237 0.763 30 H 0.124 0.876 31 H 0.111 0.889 32 H 0.121 0.879 33 H 0.110 0.890 34 H 0.100 0.900 35 H 0.055 0.945 36 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.368 -1.601 15.722 28.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.617 5.617 2 C -0.272 4.272 3 Si 0.936 3.064 4 H -0.231 1.231 5 H -0.218 1.218 6 H -0.184 1.184 7 C -0.413 4.413 8 H 0.074 0.926 9 N -0.385 5.385 10 C -0.049 4.049 11 C 0.011 3.989 12 N -0.333 5.333 13 C 0.377 3.623 14 O -0.436 6.436 15 C -0.169 4.169 16 N -0.188 5.188 17 C -0.311 4.311 18 S 0.546 5.454 19 C -0.284 4.284 20 C -0.137 4.137 21 C -0.188 4.188 22 C -0.197 4.197 23 C -0.007 4.007 24 H 0.057 0.943 25 H 0.091 0.909 26 H 0.056 0.944 27 H 0.146 0.854 28 H 0.246 0.754 29 H 0.253 0.747 30 H 0.142 0.858 31 H 0.129 0.871 32 H 0.139 0.861 33 H 0.128 0.872 34 H 0.119 0.881 35 H 0.073 0.927 36 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 23.557 0.213 15.946 28.447 hybrid contribution -1.460 -2.057 -1.034 2.726 sum 22.097 -1.843 14.912 26.722 Atomic orbital electron populations 1.71013 1.06572 1.28707 1.55422 1.26805 0.96463 1.04090 0.99851 0.83205 0.73060 0.72621 0.77465 1.23137 1.21797 1.18430 1.19998 0.81026 0.94508 1.45801 0.92624 1.46120 1.01641 1.04763 1.85998 1.23504 0.87762 0.94243 0.99424 1.22348 0.99026 0.97109 0.80390 1.45429 1.16839 1.64113 1.06935 1.17380 0.82377 0.76830 0.85671 1.90684 1.36770 1.48287 1.67820 1.20147 0.91662 1.09949 0.95159 1.66954 1.29465 1.16483 1.05855 1.28965 1.02245 1.04362 0.95552 1.82280 1.09327 1.54305 0.99496 1.25166 0.99694 1.03532 1.00054 1.20654 0.89924 1.02267 1.00884 1.23302 0.96147 1.00581 0.98818 1.23196 1.03046 0.89886 1.03605 1.22910 0.85273 0.93094 0.99451 0.94288 0.90899 0.94377 0.85365 0.75407 0.74682 0.85809 0.87111 0.86062 0.87174 0.88139 0.92712 0.90226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -64.17 13.70 21.65 0.30 -63.87 16 2 C -0.08 -4.91 5.50 84.86 0.47 -4.45 16 3 Si 1.11 56.88 25.13 68.60 1.72 58.60 16 4 H -0.30 -15.79 7.11 99.48 0.71 -15.09 16 5 H -0.29 -14.46 6.65 99.48 0.66 -13.80 16 6 H -0.26 -11.97 6.13 99.48 0.61 -11.36 16 7 C -0.29 -16.91 11.08 84.03 0.93 -15.98 16 8 H 0.06 3.52 8.05 -2.91 -0.02 3.49 16 9 N -0.66 -32.13 3.70 -737.96 -2.73 -34.86 16 10 C 0.08 3.27 5.54 83.27 0.46 3.73 16 11 C 0.12 4.25 4.61 45.55 0.21 4.46 16 12 N -0.68 -25.22 5.39 -444.91 -2.40 -27.62 16 13 C 0.59 21.00 7.80 86.62 0.68 21.67 16 14 O -0.56 -20.65 13.75 -4.13 -0.06 -20.71 16 15 C -0.04 -1.08 6.70 40.56 0.27 -0.81 16 16 N -0.47 -13.63 10.12 -193.03 -1.95 -15.59 16 17 C -0.01 -0.23 12.17 130.71 1.59 1.36 16 18 S 0.29 4.20 21.77 -56.49 -1.23 2.97 16 19 C -0.16 -3.80 6.04 24.99 0.15 -3.65 16 20 C -0.12 -2.52 5.40 -11.54 -0.06 -2.58 16 21 C -0.15 -1.99 10.04 30.62 0.31 -1.68 16 22 C -0.16 -2.63 10.24 30.62 0.31 -2.32 16 23 C 0.12 4.48 8.44 83.18 0.70 5.18 16 24 H 0.25 16.34 8.73 -92.70 -0.81 15.53 16 25 H 0.07 2.89 7.73 -2.39 -0.02 2.88 16 26 H 0.04 1.76 4.65 -2.39 -0.01 1.75 16 27 H 0.13 4.09 7.45 -2.39 -0.02 4.07 16 28 H 0.41 15.92 8.28 -92.71 -0.77 15.15 16 29 H 0.24 2.55 8.06 -2.91 -0.02 2.52 16 30 H 0.12 3.32 6.17 -2.39 -0.01 3.31 16 31 H 0.11 1.08 7.28 -2.39 -0.02 1.07 16 32 H 0.12 1.24 8.14 -2.39 -0.02 1.22 16 33 H 0.11 1.69 8.14 -2.39 -0.02 1.67 16 34 H 0.10 1.55 8.14 -2.39 -0.02 1.53 16 35 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 36 H 0.08 2.66 8.14 -2.39 -0.02 2.64 16 Total: -1.00 -77.37 314.11 -0.15 -77.52 By element: Atomic # 1 Polarization: 18.42 SS G_CDS: 0.18 Total: 18.59 kcal Atomic # 6 Polarization: -1.08 SS G_CDS: 6.02 Total: 4.94 kcal Atomic # 7 Polarization: -135.14 SS G_CDS: -6.78 Total: -141.93 kcal Atomic # 8 Polarization: -20.65 SS G_CDS: -0.06 Total: -20.71 kcal Atomic # 14 Polarization: 56.88 SS G_CDS: 1.72 Total: 58.60 kcal Atomic # 16 Polarization: 4.20 SS G_CDS: -1.23 Total: 2.97 kcal Total: -77.37 -0.15 -77.52 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001030947874.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 156.056 kcal (2) G-P(sol) polarization free energy of solvation -77.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.684 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.522 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds