Wall clock time and date at job start Tue Mar 31 2020 06:35:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86800 * 119.99787 * 2 1 4 4 H 1.48498 * 109.46936 * 269.99494 * 3 2 1 5 5 H 1.48501 * 109.47135 * 29.99873 * 3 2 1 6 6 H 1.48497 * 109.47140 * 149.99817 * 3 2 1 7 7 C 1.38810 * 120.00001 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99810 * 180.02562 * 7 2 1 9 9 N 1.36937 * 120.00092 * 359.97438 * 7 2 1 10 10 C 1.47578 * 134.49138 * 180.02562 * 9 7 2 11 11 C 1.53943 * 86.11631 * 155.36369 * 10 9 7 12 12 N 1.46506 * 113.74394 * 137.95475 * 11 10 9 13 13 C 1.34779 * 120.00046 * 156.92669 * 12 11 10 14 14 O 1.21684 * 119.99860 * 359.97438 * 13 12 11 15 15 C 1.46681 * 119.99693 * 180.02562 * 13 12 11 16 16 C 1.35659 * 126.13303 * 359.97438 * 15 13 12 17 17 N 1.30942 * 114.19387 * 180.02562 * 16 15 13 18 18 C 1.29434 * 117.36033 * 0.02562 * 17 16 15 19 19 C 1.50701 * 124.80142 * 180.02562 * 18 17 16 20 20 C 1.52996 * 117.49873 * 8.60078 * 19 18 17 21 21 C 1.52990 * 60.00144 * 252.50718 * 20 19 18 22 22 S 1.70945 * 110.39171 * 0.02562 * 18 17 16 23 23 C 1.47816 * 134.45518 * 359.87333 * 9 7 2 24 24 H 0.97001 * 120.00030 * 0.02562 * 1 2 3 25 25 H 1.08997 * 113.76937 * 41.05962 * 10 9 7 26 26 H 1.09009 * 113.76953 * 269.66094 * 10 9 7 27 27 H 1.09003 * 113.74004 * 269.15604 * 11 10 9 28 28 H 0.97000 * 119.99858 * 336.92139 * 12 11 10 29 29 H 1.08004 * 122.90245 * 359.97438 * 16 15 13 30 30 H 1.09000 * 115.54521 * 154.30099 * 19 18 17 31 31 H 1.09001 * 117.49922 * 359.97438 * 20 19 18 32 32 H 1.09002 * 117.50101 * 145.01455 * 20 19 18 33 33 H 1.09000 * 117.50307 * 252.51377 * 21 20 19 34 34 H 1.08998 * 117.52270 * 107.47582 * 21 20 19 35 35 H 1.09001 * 113.76999 * 90.37707 * 23 9 7 36 36 H 1.08994 * 113.83659 * 318.91390 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4403 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3881 0.0016 10 6 1.7202 -3.8101 0.0029 11 6 0.3471 -4.0824 0.6434 12 7 -0.3332 -5.2613 0.1015 13 6 -1.2732 -5.8924 0.8327 14 8 -1.5565 -5.4832 1.9432 15 6 -1.9539 -7.0731 0.2904 16 6 -1.7367 -7.6335 -0.9258 17 7 -2.4770 -8.6850 -1.1722 18 6 -3.3076 -9.0566 -0.2516 19 6 -4.2360 -10.2390 -0.3572 20 6 -4.0544 -11.1752 -1.5536 21 6 -5.2593 -10.2343 -1.4946 22 16 -3.2023 -8.0164 1.1008 23 6 -0.1057 -2.7571 0.0047 24 1 -0.4850 0.8401 -0.0004 25 1 2.5625 -4.0317 0.6583 26 1 1.8320 -4.2359 -0.9944 27 1 0.3595 -4.0623 1.7331 28 1 -0.1072 -5.5877 -0.7835 29 1 -1.0159 -7.2453 -1.6304 30 1 -4.5384 -10.6852 0.5901 31 1 -3.2636 -10.9357 -2.2645 32 1 -4.2371 -12.2378 -1.3935 33 1 -6.2349 -10.6778 -1.2956 34 1 -5.2614 -9.3758 -2.1662 35 1 -0.5318 -2.8727 -0.9919 36 1 -0.7183 -2.1397 0.6616 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001031288498.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:02 Heat of formation + Delta-G solvation = 95.117588 kcal Electronic energy + Delta-G solvation = -19955.611901 eV Core-core repulsion = 16762.648503 eV Total energy + Delta-G solvation = -3192.963398 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 293.094 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.33485 -39.32939 -37.59029 -37.09012 -33.65710 -31.97715 -30.46618 -27.54163 -26.63123 -24.87953 -23.54736 -22.93325 -22.73642 -21.32916 -19.83443 -19.16042 -18.36202 -17.06362 -16.82313 -16.13053 -15.61770 -15.26428 -14.88232 -14.74532 -14.40981 -14.02877 -13.90719 -13.73725 -12.74127 -12.58246 -11.97331 -11.89231 -11.70024 -11.52244 -11.47152 -11.21355 -11.01350 -10.92207 -10.81127 -10.49736 -10.25950 -10.01879 -9.62293 -9.58665 -9.56341 -9.00495 -8.84082 -8.52629 -6.96041 -5.80220 -3.14612 0.09470 0.96787 1.52832 2.28598 3.26161 3.36608 3.40670 3.45050 3.46253 3.46750 3.75056 4.37253 4.42980 4.44064 4.58340 4.79915 4.96065 5.04051 5.15932 5.27311 5.40039 5.44335 5.51277 5.61886 5.78845 5.84771 5.96147 6.15088 6.34470 6.49545 6.65013 7.19354 7.29012 7.41091 7.51004 7.71897 7.92959 8.35243 8.99544 9.65993 10.51453 11.36467 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.042823 B = 0.002745 C = 0.002725 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 653.693922 B =10198.589887 C =10272.481576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.006 4.006 3 Si 0.915 3.085 4 H -0.288 1.288 5 H -0.289 1.289 6 H -0.280 1.280 7 C -0.226 4.226 8 H 0.082 0.918 9 N -0.606 5.606 10 C 0.113 3.887 11 C 0.092 3.908 12 N -0.701 5.701 13 C 0.590 3.410 14 O -0.536 6.536 15 C -0.288 4.288 16 C 0.090 3.910 17 N -0.479 5.479 18 C 0.064 3.936 19 C -0.101 4.101 20 C -0.148 4.148 21 C -0.154 4.154 22 S 0.235 5.765 23 C 0.154 3.846 24 H 0.255 0.745 25 H 0.051 0.949 26 H 0.036 0.964 27 H 0.113 0.887 28 H 0.397 0.603 29 H 0.182 0.818 30 H 0.129 0.871 31 H 0.109 0.891 32 H 0.102 0.898 33 H 0.104 0.896 34 H 0.100 0.900 35 H 0.030 0.970 36 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.736 -22.748 -2.147 24.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.203 4.203 3 Si 0.745 3.255 4 H -0.215 1.215 5 H -0.215 1.215 6 H -0.205 1.205 7 C -0.354 4.354 8 H 0.100 0.900 9 N -0.333 5.333 10 C -0.014 4.014 11 C -0.012 4.012 12 N -0.351 5.351 13 C 0.374 3.626 14 O -0.415 6.415 15 C -0.413 4.413 16 C -0.068 4.068 17 N -0.193 5.193 18 C -0.210 4.210 19 C -0.123 4.123 20 C -0.187 4.187 21 C -0.193 4.193 22 S 0.494 5.506 23 C 0.028 3.972 24 H 0.065 0.935 25 H 0.069 0.931 26 H 0.054 0.946 27 H 0.131 0.869 28 H 0.231 0.769 29 H 0.199 0.801 30 H 0.147 0.853 31 H 0.127 0.873 32 H 0.120 0.880 33 H 0.123 0.877 34 H 0.118 0.882 35 H 0.048 0.952 36 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -9.391 -22.306 -0.776 24.215 hybrid contribution 1.265 1.196 -1.287 2.165 sum -8.126 -21.110 -2.063 22.714 Atomic orbital electron populations 1.69829 1.05066 1.25566 1.55996 1.24835 0.95714 0.97704 1.02073 0.86077 0.78625 0.83203 0.77578 1.21547 1.21539 1.20512 1.18980 0.90259 0.81538 1.44607 0.89979 1.45710 1.02366 0.99159 1.86066 1.22872 0.94472 0.86886 0.97122 1.24036 0.93403 0.83674 1.00127 1.45940 1.38985 1.30600 1.19572 1.16730 0.79708 0.81188 0.85007 1.90850 1.64502 1.66596 1.19526 1.25954 1.08084 1.06219 1.01071 1.22130 0.98740 0.91312 0.94600 1.66006 1.07033 1.14980 1.31310 1.26475 0.99272 1.00917 0.94342 1.20543 1.00153 0.95266 0.96325 1.23019 1.00746 0.96156 0.98803 1.23066 0.94174 1.02752 0.99355 1.84036 1.30972 1.18221 1.17325 1.22721 0.88224 0.88964 0.97297 0.93478 0.93053 0.94614 0.86875 0.76885 0.80130 0.85325 0.87261 0.88006 0.87734 0.88151 0.95247 0.90357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.52 11.39 55.49 0.63 -26.88 16 2 C -0.01 -0.18 5.50 -17.43 -0.10 -0.27 16 3 Si 0.92 22.17 29.55 -169.99 -5.02 17.15 16 4 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 5 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 6 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 7 C -0.23 -6.35 10.70 -15.06 -0.16 -6.51 16 8 H 0.08 2.20 7.83 -52.49 -0.41 1.79 16 9 N -0.61 -15.51 3.70 -177.91 -0.66 -16.17 16 10 C 0.11 2.24 8.69 -2.97 -0.03 2.21 16 11 C 0.09 1.79 4.40 -70.16 -0.31 1.48 16 12 N -0.70 -10.93 5.36 -56.66 -0.30 -11.23 16 13 C 0.59 9.77 7.79 -12.85 -0.10 9.67 16 14 O -0.54 -10.92 16.59 5.20 0.09 -10.83 16 15 C -0.29 -3.89 6.48 -37.10 -0.24 -4.13 16 16 C 0.09 1.05 10.93 -18.85 -0.21 0.85 16 17 N -0.48 -5.61 9.98 -11.50 -0.11 -5.73 16 18 C 0.06 0.66 6.96 -13.29 -0.09 0.57 16 19 C -0.10 -0.76 6.28 -91.77 -0.58 -1.34 16 20 C -0.15 -0.97 10.12 -26.74 -0.27 -1.24 16 21 C -0.15 -0.99 10.23 -26.74 -0.27 -1.27 16 22 S 0.23 2.69 23.01 -107.50 -2.47 0.21 16 23 C 0.15 3.69 7.33 -2.85 -0.02 3.67 16 24 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 25 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 26 H 0.04 0.64 8.11 -51.92 -0.42 0.22 16 27 H 0.11 2.38 7.50 -51.93 -0.39 1.99 16 28 H 0.40 4.92 7.42 -40.82 -0.30 4.62 16 29 H 0.18 1.64 7.15 -52.48 -0.38 1.26 16 30 H 0.13 0.71 8.14 -51.93 -0.42 0.28 16 31 H 0.11 0.87 7.84 -51.93 -0.41 0.46 16 32 H 0.10 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.10 0.47 8.14 -51.93 -0.42 0.04 16 34 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.03 0.71 8.14 -51.93 -0.42 0.28 16 36 H 0.08 2.13 7.17 -51.93 -0.37 1.76 16 LS Contribution 326.49 15.07 4.92 4.92 Total: -1.00 -33.88 326.49 -9.66 -43.54 By element: Atomic # 1 Polarization: 5.69 SS G_CDS: -4.35 Total: 1.34 kcal Atomic # 6 Polarization: 6.06 SS G_CDS: -2.37 Total: 3.69 kcal Atomic # 7 Polarization: -59.57 SS G_CDS: -0.45 Total: -60.02 kcal Atomic # 8 Polarization: -10.92 SS G_CDS: 0.09 Total: -10.83 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -5.02 Total: 17.15 kcal Atomic # 16 Polarization: 2.69 SS G_CDS: -2.47 Total: 0.21 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -33.88 -9.66 -43.54 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001031288498.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.656 kcal (2) G-P(sol) polarization free energy of solvation -33.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 104.776 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.538 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.118 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds