Wall clock time and date at job start Tue Mar 31 2020 06:35:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86800 * 119.99787 * 2 1 4 4 H 1.48498 * 109.46936 * 269.99494 * 3 2 1 5 5 H 1.48501 * 109.47135 * 29.99873 * 3 2 1 6 6 H 1.48497 * 109.47140 * 149.99817 * 3 2 1 7 7 C 1.38810 * 120.00001 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99810 * 180.02562 * 7 2 1 9 9 N 1.36937 * 120.00092 * 359.97438 * 7 2 1 10 10 C 1.47578 * 134.49138 * 180.02562 * 9 7 2 11 11 C 1.53943 * 86.11631 * 155.36369 * 10 9 7 12 12 N 1.46506 * 113.74394 * 137.95475 * 11 10 9 13 13 C 1.34779 * 120.00046 * 156.92669 * 12 11 10 14 14 O 1.21684 * 119.99860 * 359.97438 * 13 12 11 15 15 C 1.46681 * 119.99693 * 180.02562 * 13 12 11 16 16 C 1.35659 * 126.13303 * 359.97438 * 15 13 12 17 17 N 1.30942 * 114.19387 * 180.02562 * 16 15 13 18 18 C 1.29434 * 117.36033 * 0.02562 * 17 16 15 19 19 C 1.50701 * 124.80142 * 180.02562 * 18 17 16 20 20 C 1.52996 * 117.49873 * 8.60078 * 19 18 17 21 21 C 1.52990 * 60.00144 * 252.50718 * 20 19 18 22 22 S 1.70945 * 110.39171 * 0.02562 * 18 17 16 23 23 C 1.47816 * 134.45518 * 359.87333 * 9 7 2 24 24 H 0.97001 * 120.00030 * 0.02562 * 1 2 3 25 25 H 1.08997 * 113.76937 * 41.05962 * 10 9 7 26 26 H 1.09009 * 113.76953 * 269.66094 * 10 9 7 27 27 H 1.09003 * 113.74004 * 269.15604 * 11 10 9 28 28 H 0.97000 * 119.99858 * 336.92139 * 12 11 10 29 29 H 1.08004 * 122.90245 * 359.97438 * 16 15 13 30 30 H 1.09000 * 115.54521 * 154.30099 * 19 18 17 31 31 H 1.09001 * 117.49922 * 359.97438 * 20 19 18 32 32 H 1.09002 * 117.50101 * 145.01455 * 20 19 18 33 33 H 1.09000 * 117.50307 * 252.51377 * 21 20 19 34 34 H 1.08998 * 117.52270 * 107.47582 * 21 20 19 35 35 H 1.09001 * 113.76999 * 90.37707 * 23 9 7 36 36 H 1.08994 * 113.83659 * 318.91390 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4403 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3881 0.0016 10 6 1.7202 -3.8101 0.0029 11 6 0.3471 -4.0824 0.6434 12 7 -0.3332 -5.2613 0.1015 13 6 -1.2732 -5.8924 0.8327 14 8 -1.5565 -5.4832 1.9432 15 6 -1.9539 -7.0731 0.2904 16 6 -1.7367 -7.6335 -0.9258 17 7 -2.4770 -8.6850 -1.1722 18 6 -3.3076 -9.0566 -0.2516 19 6 -4.2360 -10.2390 -0.3572 20 6 -4.0544 -11.1752 -1.5536 21 6 -5.2593 -10.2343 -1.4946 22 16 -3.2023 -8.0164 1.1008 23 6 -0.1057 -2.7571 0.0047 24 1 -0.4850 0.8401 -0.0004 25 1 2.5625 -4.0317 0.6583 26 1 1.8320 -4.2359 -0.9944 27 1 0.3595 -4.0623 1.7331 28 1 -0.1072 -5.5877 -0.7835 29 1 -1.0159 -7.2453 -1.6304 30 1 -4.5384 -10.6852 0.5901 31 1 -3.2636 -10.9357 -2.2645 32 1 -4.2371 -12.2378 -1.3935 33 1 -6.2349 -10.6778 -1.2956 34 1 -5.2614 -9.3758 -2.1662 35 1 -0.5318 -2.8727 -0.9919 36 1 -0.7183 -2.1397 0.6616 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001031288498.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:01 Heat of formation + Delta-G solvation = 71.596901 kcal Electronic energy + Delta-G solvation = -19956.631834 eV Core-core repulsion = 16762.648503 eV Total energy + Delta-G solvation = -3193.983331 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 293.094 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.41256 -40.59319 -39.18512 -37.77547 -35.25626 -33.88097 -31.57761 -29.35180 -27.63426 -26.65481 -25.17994 -23.93223 -23.23247 -22.53710 -21.46276 -20.31543 -19.26526 -18.79347 -18.14090 -17.33330 -16.99294 -16.61481 -16.30045 -15.75152 -15.67331 -15.32053 -15.24126 -14.83766 -14.58679 -13.72582 -13.36125 -13.24437 -13.17853 -12.87513 -12.68683 -12.57962 -12.34900 -12.33288 -11.98160 -11.85794 -11.69542 -11.55308 -11.29332 -10.90553 -10.64101 -10.54750 -10.12141 -9.79579 -8.99922 -7.93609 -5.29267 -0.84861 0.05395 0.62767 1.31418 1.45134 1.47832 1.56592 2.05801 2.10495 2.48610 2.84786 3.03573 3.22983 3.37184 3.69397 3.74450 3.79644 3.89991 4.07222 4.12177 4.29916 4.31358 4.47311 4.72487 4.82611 4.87735 4.89916 4.97687 5.05875 5.16875 5.20586 5.31919 5.45904 5.61872 5.86838 6.40518 6.52142 6.86095 7.07833 7.56335 8.48358 9.23220 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.042823 B = 0.002745 C = 0.002725 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 653.693922 B =10198.589887 C =10272.481576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.956 5.956 2 C -0.071 4.071 3 Si 0.984 3.016 4 H -0.284 1.284 5 H -0.297 1.297 6 H -0.265 1.265 7 C -0.234 4.234 8 H 0.092 0.908 9 N -0.638 5.638 10 C 0.124 3.876 11 C 0.121 3.879 12 N -0.688 5.688 13 C 0.593 3.407 14 O -0.582 6.582 15 C -0.325 4.325 16 C 0.112 3.888 17 N -0.498 5.498 18 C 0.083 3.917 19 C -0.118 4.118 20 C -0.142 4.142 21 C -0.147 4.147 22 S 0.232 5.768 23 C 0.152 3.848 24 H 0.248 0.752 25 H 0.068 0.932 26 H 0.069 0.931 27 H 0.095 0.905 28 H 0.416 0.584 29 H 0.206 0.794 30 H 0.152 0.848 31 H 0.094 0.906 32 H 0.126 0.874 33 H 0.129 0.871 34 H 0.086 0.914 35 H 0.027 0.973 36 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.351 -25.146 -3.206 26.690 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.604 5.604 2 C -0.264 4.264 3 Si 0.812 3.188 4 H -0.211 1.211 5 H -0.223 1.223 6 H -0.189 1.189 7 C -0.362 4.362 8 H 0.110 0.890 9 N -0.366 5.366 10 C -0.001 4.001 11 C 0.015 3.985 12 N -0.339 5.339 13 C 0.380 3.620 14 O -0.464 6.464 15 C -0.450 4.450 16 C -0.047 4.047 17 N -0.212 5.212 18 C -0.190 4.190 19 C -0.140 4.140 20 C -0.181 4.181 21 C -0.186 4.186 22 S 0.493 5.507 23 C 0.025 3.975 24 H 0.057 0.943 25 H 0.086 0.914 26 H 0.087 0.913 27 H 0.113 0.887 28 H 0.253 0.747 29 H 0.222 0.778 30 H 0.170 0.830 31 H 0.112 0.888 32 H 0.144 0.856 33 H 0.148 0.852 34 H 0.104 0.896 35 H 0.045 0.955 36 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -8.978 -24.764 -1.860 26.407 hybrid contribution 1.068 1.759 -1.012 2.293 sum -7.910 -23.005 -2.872 24.496 Atomic orbital electron populations 1.70042 1.06691 1.25746 1.57958 1.25741 0.96579 1.01297 1.02739 0.84999 0.77672 0.78616 0.77558 1.21063 1.22338 1.18921 1.19436 0.91015 0.82789 1.42988 0.89022 1.46037 1.03246 1.00890 1.86387 1.23023 0.94700 0.83502 0.98906 1.23289 0.93282 0.83128 0.98829 1.45606 1.38657 1.29299 1.20366 1.17049 0.79098 0.81559 0.84283 1.90825 1.65884 1.68088 1.21591 1.25571 1.10301 1.06554 1.02542 1.22531 0.97951 0.90324 0.93922 1.66145 1.07943 1.15390 1.31719 1.27108 0.98194 1.00580 0.93160 1.20887 1.00391 0.94681 0.98049 1.23093 1.00224 0.97364 0.97401 1.23152 0.95212 1.02294 0.97925 1.84033 1.30545 1.18240 1.17857 1.22598 0.87450 0.90876 0.96570 0.94268 0.91403 0.91296 0.88658 0.74660 0.77762 0.83002 0.88782 0.85566 0.85245 0.89561 0.95476 0.94808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -59.27 11.39 21.65 0.25 -59.03 16 2 C -0.07 -4.09 5.50 84.86 0.47 -3.62 16 3 Si 0.98 46.13 29.55 68.60 2.03 48.16 16 4 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 5 H -0.30 -14.13 7.11 99.48 0.71 -13.42 16 6 H -0.26 -11.61 7.11 99.48 0.71 -10.90 16 7 C -0.23 -13.14 10.70 84.03 0.90 -12.25 16 8 H 0.09 4.82 7.83 -2.91 -0.02 4.80 16 9 N -0.64 -32.76 3.70 -716.78 -2.65 -35.41 16 10 C 0.12 4.68 8.69 86.49 0.75 5.43 16 11 C 0.12 4.70 4.40 46.74 0.21 4.90 16 12 N -0.69 -20.91 5.36 -451.41 -2.42 -23.33 16 13 C 0.59 19.68 7.79 86.45 0.67 20.35 16 14 O -0.58 -24.40 16.59 -4.30 -0.07 -24.48 16 15 C -0.33 -8.53 6.48 23.88 0.15 -8.38 16 16 C 0.11 2.41 10.93 84.23 0.92 3.33 16 17 N -0.50 -10.71 9.98 -190.30 -1.90 -12.61 16 18 C 0.08 1.58 6.96 88.46 0.62 2.19 16 19 C -0.12 -1.46 6.28 -11.54 -0.07 -1.53 16 20 C -0.14 -1.45 10.12 30.59 0.31 -1.14 16 21 C -0.15 -1.48 10.23 30.59 0.31 -1.16 16 22 S 0.23 5.15 23.01 -56.49 -1.30 3.85 16 23 C 0.15 7.47 7.33 86.43 0.63 8.11 16 24 H 0.25 14.99 8.31 -92.71 -0.77 14.22 16 25 H 0.07 2.37 8.14 -2.39 -0.02 2.35 16 26 H 0.07 2.22 8.11 -2.38 -0.02 2.20 16 27 H 0.10 4.11 7.50 -2.39 -0.02 4.09 16 28 H 0.42 9.44 7.42 -92.71 -0.69 8.75 16 29 H 0.21 3.15 7.15 -2.91 -0.02 3.13 16 30 H 0.15 1.16 8.14 -2.39 -0.02 1.14 16 31 H 0.09 1.30 7.84 -2.39 -0.02 1.28 16 32 H 0.13 0.69 8.14 -2.39 -0.02 0.67 16 33 H 0.13 0.68 8.14 -2.39 -0.02 0.66 16 34 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 35 H 0.03 1.34 8.14 -2.39 -0.02 1.32 16 36 H 0.03 1.95 7.17 -2.39 -0.02 1.93 16 Total: -1.00 -75.78 326.49 0.23 -75.55 By element: Atomic # 1 Polarization: 10.64 SS G_CDS: 0.43 Total: 11.07 kcal Atomic # 6 Polarization: 10.36 SS G_CDS: 5.87 Total: 16.23 kcal Atomic # 7 Polarization: -123.66 SS G_CDS: -6.73 Total: -130.38 kcal Atomic # 8 Polarization: -24.40 SS G_CDS: -0.07 Total: -24.48 kcal Atomic # 14 Polarization: 46.13 SS G_CDS: 2.03 Total: 48.16 kcal Atomic # 16 Polarization: 5.15 SS G_CDS: -1.30 Total: 3.85 kcal Total: -75.78 0.23 -75.55 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001031288498.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.142 kcal (2) G-P(sol) polarization free energy of solvation -75.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.231 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.545 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds