Wall clock time and date at job start Tue Mar 31 2020 06:56:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.29511 * 121.53328 * 2 1 4 4 S 1.69483 * 107.84760 * 179.97438 * 3 2 1 5 5 C 1.72021 * 96.02263 * 359.80102 * 4 3 2 6 6 C 1.37904 * 105.36579 * 0.32700 * 5 4 3 7 7 C 1.47338 * 123.08590 * 179.88622 * 6 5 4 8 8 O 1.21610 * 120.00182 * 185.19274 * 7 6 5 9 9 N 1.34777 * 120.00086 * 5.19110 * 7 6 5 10 10 C 1.47875 * 126.94334 * 354.72794 * 9 7 6 11 11 C 1.56021 * 105.10020 * 182.01854 * 10 9 7 12 12 H 1.09010 * 116.24552 * 159.67898 * 11 10 9 13 13 C 1.57086 * 99.60973 * 32.80228 * 11 10 9 14 14 C 1.49288 * 126.94576 * 174.74317 * 9 7 6 15 15 H 1.08999 * 116.15075 * 16.68873 * 14 9 7 16 16 C 1.55997 * 104.31991 * 246.59729 * 14 9 7 17 17 N 1.47863 * 105.11784 * 289.11239 * 16 14 9 18 18 C 1.36934 * 126.94408 * 181.87445 * 17 16 14 19 19 H 1.08003 * 120.00134 * 184.68479 * 18 17 16 20 20 C 1.38808 * 120.00304 * 4.68449 * 18 17 16 21 21 N 1.31623 * 120.00003 * 354.63569 * 20 18 17 22 22 Si 1.86800 * 120.00291 * 174.91316 * 20 18 17 23 23 H 1.48498 * 109.47247 * 94.99603 * 22 20 18 24 24 H 1.48498 * 109.47048 * 214.99772 * 22 20 18 25 25 H 1.48500 * 109.46789 * 334.99704 * 22 20 18 26 26 H 1.09002 * 109.47156 * 270.02328 * 1 2 3 27 27 H 1.09003 * 109.47405 * 30.01863 * 1 2 3 28 28 H 1.08997 * 109.47420 * 150.02284 * 1 2 3 29 29 H 1.08005 * 127.31839 * 180.22441 * 5 4 3 30 30 H 1.08990 * 110.31648 * 63.10977 * 10 9 7 31 31 H 1.09002 * 110.31239 * 300.91979 * 10 9 7 32 32 H 1.09001 * 112.36346 * 64.27606 * 13 11 10 33 33 H 1.09000 * 112.36400 * 191.70949 * 13 11 10 34 34 H 1.09002 * 110.41529 * 170.14416 * 16 14 9 35 35 H 1.09005 * 110.20150 * 47.97311 * 16 14 9 36 36 H 0.96993 * 120.00517 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1844 1.1039 0.0000 4 16 3.8311 0.7029 0.0007 5 6 3.6017 -1.0020 0.0070 6 6 2.2351 -1.1868 0.0007 7 6 1.6035 -2.5180 0.0007 8 8 0.3958 -2.6180 -0.1003 9 7 2.3643 -3.6248 0.1128 10 6 3.8415 -3.6895 0.1350 11 6 4.1804 -5.2096 0.2278 12 1 5.1843 -5.4995 -0.0829 13 6 2.9772 -5.7972 -0.5935 14 6 1.8861 -5.0334 0.2392 15 1 0.8475 -5.2147 -0.0376 16 6 2.3157 -5.4591 1.6771 17 7 3.7878 -5.5853 1.6182 18 6 4.6217 -5.9740 2.6324 19 1 5.6920 -5.9551 2.4888 20 6 4.0916 -6.3924 3.8451 21 7 2.7949 -6.3160 4.0580 22 14 5.2192 -7.0566 5.1781 23 1 5.5758 -5.9618 6.1158 24 1 4.5238 -8.1380 5.9211 25 1 6.4545 -7.5982 4.5567 26 1 -0.3633 0.0004 1.0277 27 1 -0.3634 0.8898 -0.5141 28 1 -0.3634 -0.8901 -0.5135 29 1 4.3656 -1.7654 0.0128 30 1 4.2304 -3.1612 1.0053 31 1 4.2526 -3.2654 -0.7812 32 1 2.9961 -5.4851 -1.6377 33 1 2.8947 -6.8793 -0.4917 34 1 1.8641 -6.4153 1.9414 35 1 2.0301 -4.6928 2.3978 36 1 2.4245 -6.6079 4.9055 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001032365229.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:56:19 Heat of formation + Delta-G solvation = 79.586631 kcal Electronic energy + Delta-G solvation = -21735.062790 eV Core-core repulsion = 18541.425919 eV Total energy + Delta-G solvation = -3193.636871 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 293.094 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.55749 -39.08627 -37.27442 -33.93133 -32.38556 -30.88643 -29.46926 -29.00086 -28.66956 -25.60320 -24.68273 -23.03093 -21.69675 -20.03152 -19.55379 -19.09498 -17.61223 -17.13911 -16.17374 -15.76190 -15.33319 -14.92006 -14.50974 -14.26812 -13.95155 -13.60987 -13.19744 -13.11871 -12.33425 -12.30519 -12.12153 -12.01381 -11.80038 -11.42592 -11.27407 -11.12461 -10.92776 -10.81293 -10.74927 -10.60878 -10.32158 -10.15249 -9.76165 -9.69617 -9.45672 -8.76828 -8.70901 -8.12252 -7.01710 -5.85319 -3.19867 0.46333 1.37386 1.74234 1.92688 3.21306 3.32396 3.37700 3.40379 3.49138 4.34758 4.51336 4.71570 4.95939 5.04726 5.07623 5.27447 5.35379 5.43235 5.45354 5.51664 5.67273 5.70300 5.71889 5.79812 5.97136 6.15390 6.25211 6.31828 6.35439 6.48779 6.57622 6.69421 7.34429 7.38813 7.63920 7.92700 8.01841 8.43689 9.01730 9.62956 10.31195 11.26896 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.019663 B = 0.004886 C = 0.004564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1423.682541 B = 5729.387470 C = 6133.672830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C 0.167 3.833 3 N -0.475 5.475 4 S 0.265 5.735 5 C -0.179 4.179 6 C -0.203 4.203 7 C 0.598 3.402 8 O -0.545 6.545 9 N -0.596 5.596 10 C 0.072 3.928 11 C 0.141 3.859 12 H 0.109 0.891 13 C -0.151 4.151 14 C 0.101 3.899 15 H 0.118 0.882 16 C 0.173 3.827 17 N -0.596 5.596 18 C -0.236 4.236 19 H 0.081 0.919 20 C -0.003 4.003 21 N -0.917 5.917 22 Si 0.911 3.089 23 H -0.289 1.289 24 H -0.290 1.290 25 H -0.280 1.280 26 H 0.082 0.918 27 H 0.070 0.930 28 H 0.115 0.885 29 H 0.206 0.794 30 H 0.077 0.923 31 H 0.059 0.941 32 H 0.066 0.934 33 H 0.086 0.914 34 H 0.061 0.939 35 H 0.046 0.954 36 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.645 8.239 -10.541 13.479 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.011 4.011 3 N -0.295 5.295 4 S 0.420 5.580 5 C -0.328 4.328 6 C -0.224 4.224 7 C 0.385 3.615 8 O -0.425 6.425 9 N -0.328 5.328 10 C -0.054 4.054 11 C 0.031 3.969 12 H 0.127 0.873 13 C -0.191 4.191 14 C -0.001 4.001 15 H 0.135 0.865 16 C 0.048 3.952 17 N -0.320 5.320 18 C -0.363 4.363 19 H 0.099 0.901 20 C -0.200 4.200 21 N -0.563 5.563 22 Si 0.742 3.258 23 H -0.217 1.217 24 H -0.216 1.216 25 H -0.205 1.205 26 H 0.101 0.899 27 H 0.089 0.911 28 H 0.133 0.867 29 H 0.223 0.777 30 H 0.095 0.905 31 H 0.077 0.923 32 H 0.085 0.915 33 H 0.105 0.895 34 H 0.079 0.921 35 H 0.064 0.936 36 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 1.841 10.252 -10.301 14.649 hybrid contribution -0.058 -1.866 0.976 2.106 sum 1.783 8.386 -9.325 12.667 Atomic orbital electron populations 1.20961 0.85490 1.05141 1.04283 1.21459 0.99526 0.86702 0.93432 1.76447 1.00185 1.26249 1.26654 1.83941 1.11037 0.96729 1.66286 1.28350 1.00393 1.04272 0.99792 1.20446 0.92230 0.96228 1.13519 1.16852 0.85754 0.81994 0.76932 1.90658 1.13427 1.85994 1.52427 1.49011 1.07462 1.06438 1.69870 1.23676 0.80103 1.02028 0.99565 1.23214 0.96775 0.89621 0.87249 0.87328 1.24174 0.96980 1.00530 0.97393 1.24401 0.98309 0.78013 0.99398 0.86467 1.21948 0.83923 1.00179 0.89198 1.45241 1.02553 1.78615 1.05623 1.19032 0.88904 1.37367 0.91028 0.90091 1.24843 0.96033 1.01127 0.98005 1.69914 1.10102 1.51842 1.24465 0.86120 0.79478 0.78529 0.81722 1.21656 1.21577 1.20508 0.89912 0.91079 0.86718 0.77715 0.90535 0.92346 0.91541 0.89525 0.92118 0.93605 0.93479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.33 9.60 36.01 0.35 -0.99 16 2 C 0.17 2.55 6.75 -83.20 -0.56 1.99 16 3 N -0.47 -7.09 11.97 32.50 0.39 -6.70 16 4 S 0.26 3.26 23.69 -107.50 -2.55 0.71 16 5 C -0.18 -2.38 9.86 30.61 0.30 -2.08 16 6 C -0.20 -3.20 5.86 -105.95 -0.62 -3.82 16 7 C 0.60 10.72 7.85 -12.56 -0.10 10.62 16 8 O -0.54 -10.69 14.08 5.27 0.07 -10.61 16 9 N -0.60 -10.42 2.96 -158.08 -0.47 -10.89 16 10 C 0.07 1.11 4.29 -1.67 -0.01 1.11 16 11 C 0.14 2.40 5.53 -62.55 -0.35 2.05 16 12 H 0.11 1.63 8.14 -51.92 -0.42 1.21 16 13 C -0.15 -2.38 6.80 -22.30 -0.15 -2.53 16 14 C 0.10 1.84 5.25 -62.57 -0.33 1.51 16 15 H 0.12 2.06 8.04 -51.93 -0.42 1.64 16 16 C 0.17 3.94 4.78 -1.69 -0.01 3.94 16 17 N -0.60 -13.56 3.02 -156.35 -0.47 -14.03 16 18 C -0.24 -6.00 10.37 -15.06 -0.16 -6.16 16 19 H 0.08 1.96 7.83 -52.48 -0.41 1.55 16 20 C 0.00 -0.08 5.49 -17.43 -0.10 -0.17 16 21 N -0.92 -25.98 10.59 55.49 0.59 -25.40 16 22 Si 0.91 21.09 29.56 -169.99 -5.02 16.07 16 23 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 24 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 25 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 26 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 27 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 28 H 0.11 1.70 5.50 -51.93 -0.29 1.42 16 29 H 0.21 2.38 4.09 -52.48 -0.21 2.16 16 30 H 0.08 1.29 6.93 -51.93 -0.36 0.93 16 31 H 0.06 0.71 6.95 -51.93 -0.36 0.35 16 32 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 33 H 0.09 1.40 8.14 -51.93 -0.42 0.97 16 34 H 0.06 1.54 7.36 -51.93 -0.38 1.16 16 35 H 0.05 1.22 7.78 -51.93 -0.40 0.81 16 36 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 LS Contribution 303.11 15.07 4.57 4.57 Total: -1.00 -30.25 303.11 -8.70 -38.95 By element: Atomic # 1 Polarization: 5.95 SS G_CDS: -4.08 Total: 1.87 kcal Atomic # 6 Polarization: 7.19 SS G_CDS: -1.73 Total: 5.47 kcal Atomic # 7 Polarization: -57.06 SS G_CDS: 0.04 Total: -57.03 kcal Atomic # 8 Polarization: -10.69 SS G_CDS: 0.07 Total: -10.61 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Atomic # 16 Polarization: 3.26 SS G_CDS: -2.55 Total: 0.71 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -30.25 -8.70 -38.95 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032365229.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.541 kcal (2) G-P(sol) polarization free energy of solvation -30.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.289 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.703 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.954 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds