Wall clock time and date at job start Tue Mar 31 2020 06:56:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.29511 * 121.53328 * 2 1 4 4 S 1.69483 * 107.84760 * 179.97438 * 3 2 1 5 5 C 1.72021 * 96.02263 * 359.80102 * 4 3 2 6 6 C 1.37904 * 105.36579 * 0.32700 * 5 4 3 7 7 C 1.47338 * 123.08590 * 179.88622 * 6 5 4 8 8 O 1.21610 * 120.00182 * 185.19274 * 7 6 5 9 9 N 1.34777 * 120.00086 * 5.19110 * 7 6 5 10 10 C 1.47875 * 126.94334 * 354.72794 * 9 7 6 11 11 C 1.56021 * 105.10020 * 182.01854 * 10 9 7 12 12 H 1.09010 * 116.24552 * 159.67898 * 11 10 9 13 13 C 1.57086 * 99.60973 * 32.80228 * 11 10 9 14 14 C 1.49288 * 126.94576 * 174.74317 * 9 7 6 15 15 H 1.08999 * 116.15075 * 16.68873 * 14 9 7 16 16 C 1.55997 * 104.31991 * 246.59729 * 14 9 7 17 17 N 1.47863 * 105.11784 * 289.11239 * 16 14 9 18 18 C 1.36934 * 126.94408 * 181.87445 * 17 16 14 19 19 H 1.08003 * 120.00134 * 184.68479 * 18 17 16 20 20 C 1.38808 * 120.00304 * 4.68449 * 18 17 16 21 21 N 1.31623 * 120.00003 * 354.63569 * 20 18 17 22 22 Si 1.86800 * 120.00291 * 174.91316 * 20 18 17 23 23 H 1.48498 * 109.47247 * 94.99603 * 22 20 18 24 24 H 1.48498 * 109.47048 * 214.99772 * 22 20 18 25 25 H 1.48500 * 109.46789 * 334.99704 * 22 20 18 26 26 H 1.09002 * 109.47156 * 270.02328 * 1 2 3 27 27 H 1.09003 * 109.47405 * 30.01863 * 1 2 3 28 28 H 1.08997 * 109.47420 * 150.02284 * 1 2 3 29 29 H 1.08005 * 127.31839 * 180.22441 * 5 4 3 30 30 H 1.08990 * 110.31648 * 63.10977 * 10 9 7 31 31 H 1.09002 * 110.31239 * 300.91979 * 10 9 7 32 32 H 1.09001 * 112.36346 * 64.27606 * 13 11 10 33 33 H 1.09000 * 112.36400 * 191.70949 * 13 11 10 34 34 H 1.09002 * 110.41529 * 170.14416 * 16 14 9 35 35 H 1.09005 * 110.20150 * 47.97311 * 16 14 9 36 36 H 0.96993 * 120.00517 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1844 1.1039 0.0000 4 16 3.8311 0.7029 0.0007 5 6 3.6017 -1.0020 0.0070 6 6 2.2351 -1.1868 0.0007 7 6 1.6035 -2.5180 0.0007 8 8 0.3958 -2.6180 -0.1003 9 7 2.3643 -3.6248 0.1128 10 6 3.8415 -3.6895 0.1350 11 6 4.1804 -5.2096 0.2278 12 1 5.1843 -5.4995 -0.0829 13 6 2.9772 -5.7972 -0.5935 14 6 1.8861 -5.0334 0.2392 15 1 0.8475 -5.2147 -0.0376 16 6 2.3157 -5.4591 1.6771 17 7 3.7878 -5.5853 1.6182 18 6 4.6217 -5.9740 2.6324 19 1 5.6920 -5.9551 2.4888 20 6 4.0916 -6.3924 3.8451 21 7 2.7949 -6.3160 4.0580 22 14 5.2192 -7.0566 5.1781 23 1 5.5758 -5.9618 6.1158 24 1 4.5238 -8.1380 5.9211 25 1 6.4545 -7.5982 4.5567 26 1 -0.3633 0.0004 1.0277 27 1 -0.3634 0.8898 -0.5141 28 1 -0.3634 -0.8901 -0.5135 29 1 4.3656 -1.7654 0.0128 30 1 4.2304 -3.1612 1.0053 31 1 4.2526 -3.2654 -0.7812 32 1 2.9961 -5.4851 -1.6377 33 1 2.8947 -6.8793 -0.4917 34 1 1.8641 -6.4153 1.9414 35 1 2.0301 -4.6928 2.3978 36 1 2.4245 -6.6079 4.9055 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001032365229.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:56:18 Heat of formation + Delta-G solvation = 60.430289 kcal Electronic energy + Delta-G solvation = -21735.893471 eV Core-core repulsion = 18541.425919 eV Total energy + Delta-G solvation = -3194.467552 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 293.094 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.90836 -40.37819 -38.61828 -35.59481 -33.90021 -32.33150 -30.60524 -30.42735 -30.29014 -27.11651 -26.23356 -24.44272 -23.06894 -21.44299 -20.88055 -20.48151 -19.02922 -18.55236 -17.66531 -17.26447 -16.63535 -16.40890 -15.89879 -15.63076 -15.42823 -15.04074 -14.60752 -14.42223 -13.71016 -13.55288 -13.46408 -13.36291 -13.22490 -13.08907 -12.83619 -12.68963 -12.43293 -12.21606 -12.16461 -12.01287 -11.82747 -11.76306 -11.53192 -10.89147 -10.81686 -10.64947 -9.82982 -9.48867 -8.89811 -7.84550 -5.19298 -0.63105 0.32540 0.67252 0.72630 1.48196 1.49078 1.58159 1.87147 2.19257 2.49295 3.33039 3.36225 3.44981 3.58226 3.81937 3.84560 3.93898 4.03199 4.20748 4.29932 4.37987 4.49540 4.61977 4.62369 4.68336 4.82746 4.89517 5.04003 5.13392 5.19370 5.26149 5.46271 5.52366 5.59777 5.67797 6.11097 6.58017 7.03882 7.07627 7.72177 8.42291 9.26927 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.019663 B = 0.004886 C = 0.004564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1423.682541 B = 5729.387470 C = 6133.672830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C 0.157 3.843 3 N -0.500 5.500 4 S 0.330 5.670 5 C -0.169 4.169 6 C -0.231 4.231 7 C 0.593 3.407 8 O -0.572 6.572 9 N -0.600 5.600 10 C 0.076 3.924 11 C 0.136 3.864 12 H 0.141 0.859 13 C -0.130 4.130 14 C 0.105 3.895 15 H 0.119 0.881 16 C 0.186 3.814 17 N -0.616 5.616 18 C -0.228 4.228 19 H 0.098 0.902 20 C -0.069 4.069 21 N -0.957 5.957 22 Si 0.973 3.027 23 H -0.294 1.294 24 H -0.302 1.302 25 H -0.260 1.260 26 H 0.080 0.920 27 H 0.088 0.912 28 H 0.100 0.900 29 H 0.225 0.775 30 H 0.064 0.936 31 H 0.108 0.892 32 H 0.104 0.896 33 H 0.082 0.918 34 H 0.022 0.978 35 H -0.006 1.006 36 H 0.243 0.757 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.328 9.206 -12.679 16.255 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.020 4.020 3 N -0.322 5.322 4 S 0.485 5.515 5 C -0.318 4.318 6 C -0.252 4.252 7 C 0.381 3.619 8 O -0.454 6.454 9 N -0.332 5.332 10 C -0.048 4.048 11 C 0.030 3.970 12 H 0.158 0.842 13 C -0.169 4.169 14 C 0.002 3.998 15 H 0.137 0.863 16 C 0.059 3.941 17 N -0.340 5.340 18 C -0.357 4.357 19 H 0.115 0.885 20 C -0.262 4.262 21 N -0.606 5.606 22 Si 0.802 3.198 23 H -0.222 1.222 24 H -0.230 1.230 25 H -0.184 1.184 26 H 0.098 0.902 27 H 0.107 0.893 28 H 0.119 0.881 29 H 0.241 0.759 30 H 0.082 0.918 31 H 0.126 0.874 32 H 0.122 0.878 33 H 0.101 0.899 34 H 0.040 0.960 35 H 0.012 0.988 36 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 4.571 11.235 -12.494 17.413 hybrid contribution -0.807 -2.066 1.600 2.735 sum 3.764 9.169 -10.895 14.729 Atomic orbital electron populations 1.20901 0.85262 1.05260 1.04141 1.21533 1.00078 0.86715 0.93682 1.76307 1.02095 1.26537 1.27266 1.83744 1.08679 0.94961 1.64075 1.28604 0.99724 1.05784 0.97670 1.20313 0.93310 0.95136 1.16441 1.17211 0.85577 0.82801 0.76299 1.90643 1.14652 1.86531 1.53575 1.49049 1.08408 1.05875 1.69871 1.23660 0.78917 1.00801 1.01420 1.23657 0.98770 0.90538 0.84072 0.84185 1.24079 0.94268 0.99890 0.98635 1.24205 0.99481 0.79414 0.96715 0.86327 1.21535 0.84646 0.96695 0.91179 1.45488 1.02198 1.78532 1.07793 1.19532 0.90016 1.34724 0.91394 0.88453 1.25638 0.97114 1.02846 1.00608 1.70152 1.11980 1.54119 1.24329 0.85139 0.78324 0.77226 0.79120 1.22189 1.22955 1.18403 0.90175 0.89326 0.88124 0.75879 0.91796 0.87432 0.87810 0.89943 0.95951 0.98751 0.94742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.58 9.60 71.24 0.68 -1.90 16 2 C 0.16 4.64 6.75 43.14 0.29 4.93 16 3 N -0.50 -14.00 11.97 -51.09 -0.61 -14.61 16 4 S 0.33 7.07 23.69 -56.49 -1.34 5.73 16 5 C -0.17 -3.96 9.86 67.74 0.67 -3.29 16 6 C -0.23 -6.94 5.86 -20.72 -0.12 -7.06 16 7 C 0.59 20.92 7.85 86.64 0.68 21.60 16 8 O -0.57 -22.80 14.08 -4.06 -0.06 -22.86 16 9 N -0.60 -20.21 2.96 -772.28 -2.28 -22.50 16 10 C 0.08 2.11 4.29 87.16 0.37 2.48 16 11 C 0.14 4.21 5.53 46.93 0.26 4.47 16 12 H 0.14 3.49 8.14 -2.38 -0.02 3.47 16 13 C -0.13 -3.70 6.80 33.46 0.23 -3.47 16 14 C 0.10 3.79 5.25 46.92 0.25 4.03 16 15 H 0.12 4.23 8.04 -2.39 -0.02 4.21 16 16 C 0.19 8.82 4.78 87.16 0.42 9.24 16 17 N -0.62 -27.74 3.02 -648.58 -1.96 -29.69 16 18 C -0.23 -11.49 10.37 84.03 0.87 -10.62 16 19 H 0.10 4.49 7.83 -2.91 -0.02 4.47 16 20 C -0.07 -3.77 5.49 84.86 0.47 -3.31 16 21 N -0.96 -56.95 10.59 21.65 0.23 -56.72 16 22 Si 0.97 43.97 29.56 68.60 2.03 46.00 16 23 H -0.29 -13.38 7.11 99.48 0.71 -12.67 16 24 H -0.30 -14.15 7.11 99.48 0.71 -13.44 16 25 H -0.26 -10.75 7.11 99.48 0.71 -10.04 16 26 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 27 H 0.09 2.02 8.14 -2.39 -0.02 2.00 16 28 H 0.10 3.05 5.50 -2.39 -0.01 3.04 16 29 H 0.23 4.21 4.09 -2.91 -0.01 4.20 16 30 H 0.06 1.97 6.93 -2.39 -0.02 1.96 16 31 H 0.11 2.01 6.95 -2.39 -0.02 1.99 16 32 H 0.10 2.29 8.14 -2.39 -0.02 2.27 16 33 H 0.08 2.47 8.14 -2.39 -0.02 2.45 16 34 H 0.02 1.21 7.36 -2.39 -0.02 1.20 16 35 H -0.01 -0.33 7.78 -2.38 -0.02 -0.35 16 36 H 0.24 14.35 8.31 -92.71 -0.77 13.58 16 Total: -1.00 -69.24 303.11 2.19 -67.05 By element: Atomic # 1 Polarization: 9.37 SS G_CDS: 1.12 Total: 10.49 kcal Atomic # 6 Polarization: 12.05 SS G_CDS: 5.06 Total: 17.11 kcal Atomic # 7 Polarization: -118.90 SS G_CDS: -4.62 Total: -123.52 kcal Atomic # 8 Polarization: -22.80 SS G_CDS: -0.06 Total: -22.86 kcal Atomic # 14 Polarization: 43.97 SS G_CDS: 2.03 Total: 46.00 kcal Atomic # 16 Polarization: 7.07 SS G_CDS: -1.34 Total: 5.73 kcal Total: -69.24 2.19 -67.05 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032365229.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.482 kcal (2) G-P(sol) polarization free energy of solvation -69.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.187 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.052 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds